Gene detail

Detailed information of asel_s0090.g21.t3 in Acropora selago

Genomic Location: sc0000090_pilon:666257...702121
NR annotation: XP_029204613.1, mitochondrial import receptor subunit TOM70-like [Acropora millepora]
Species Acropora selago · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

asel_s0090.g21.t3

ATGAGTGCACAAGAATCGAGCGGGAGTTTGAGCAAATGGCAAATTGCCGCCCTAATCGGCGTGCCCGTTGCAACAGCTTGCGTTTTGGGGGGGGTTTACTACTGGAAGACTTCTAAAGCTTCGTCGGAGGACGACGTGGAGAAAGGAGAAACAGGAACTGCGGATGATGAAACTGCTGAAAGTAAAGATGCTAGTGAAGAGAATCGGTCTCCTGCAGAACGAGCTGCAGCGGTTAAGCTTAGAGGAAACAAGTACTTCAAGGGTGGCAAATTTGACTTGGCTATACAGTGTTACACGGAAGCCATTGAGCTCTGTCCTGAGGACAACAAGACAGACCTGGCAACGTACTACCAAAACAGAGCAGCAGCTTACGCTCAACAGGATAATTCAGAGCAAGTCATTGAAGACGCCACAAAAGCCATTGAACTAAACAAGAAGTATTCCAAAGCTTTCATGAAGAGAGCAAGGGCATATGAGCTACTCAACAGGAAGGAAGATTGTCTGCGAGCTTCGTCGGAGGACGACGTGGAGAAAGGAGAAACAGGAACTGCGGATGATGAAACTGCTGAAAGTAAAGATGCTAGTGAAGAGAATCGGTCTCCTGCAGAACGAGCTGCAGCGGTTAAGCTTAGAGGAAACAAGTACTTCAAGGGTGGCAAATTTGACTTGGCTATACAGTGTTACACGGAAGCCATTGAGCTCTGTCCTGAGGACAACAAGACAGACCTGGCAACGTACTACCAAAACAGAGCAGCAGCTTACGCTCAACAGGATAACTCAGAGCAAGTCATTGAAGACGCCACTAAAGCCATTGAACTAAACAAGAAGTATTCCAAAGCTTTCATGAAGAGAGCAAGGGCATATGAGCTACTGAACAGGAAGGAAGATTGTCTGCGAGATCTTACTGCAGTTTGTATGATTGAGGGGTTTAATAATCCAAACTGGATGGTACAGGCCGATAGAGTCCTAAAAGAAATAGGAAAAGAGAAAGCTCAAGAATATTACAAGACCAGGAAACCTACTTTGCCCTCACCAACATACATCAAAGCTTATTTAGAGTCATTCTGTCATGATGACACATTAGAAGTTAATCTGGAGGAAGATTCATCTGAGGAATCAAGTTTCCTTGAAGCTGTTAAGCAAATGAAAGGGAAGGAATATGAAAATATATTGGACCTTTGCACTCAGCAGATTGAGAAAGGCCCAGGGCCTTTTTATATTAGAGCCCTTGCCTTGAGAGGAACAATGTACACATTGATATCAAAAGTCGATGAAGCAATCAAGGATTTAACACAAGTGATAGATTCTGAGGACGAGCAGGTCTCCATCAAGCTGAAAGTTAACTGCTTGATCAAACGAGGAAGCATGCACCTCCAAGCCACAATGTTGAAAGAGTGTGTGGAAGACTTCACGAAGGCAATATCCCTTGATCCTGACAACTCTGATATTTATCACCACAGAGGACAGATTAACTTTTTGTCAGAGAAGCTAACAGAGGCTAAAGAAGATTTTGAGAAGTGTATATCACTGAACAACAGCTTCATTCCTGCCAAGATTCAGCTGGCTTATTCTATATACAAGTCGGCTGCACTTCAGCAGTCGCCTATCTTGGCACAAGGAGCTGTGGAAATGTTGCAGAAAACGGTTGAGAAATACCCCGATTCTGCCGATGCTCACAGCCTATTTGCACAGGTTTTACAGGATATGCAGCAGTTCGCAAAAGCCGAGGAACATTTTGACCTCGCCATAAAGGCTGAACCAAAGAATCCTGTCCATTTGGTTTACAAAGGCATGCTGATGTTGCAGTGGCGACAAGACGTAGAAAAGGCCGCTGACTTAGTTAACGAAGCCTTGGTAATCGACGATAAGTGTGACTTTGCTTACGAGACCCTGGCTACCCTCGAGGTGCAAAGGGGCCATTTAGACAAAGCAATTGAGCTGTTCAACAAAGCCATCGAGTTAGTGAGAACAGAAGCAGAGTTGGCGCAAACGTTCTCCCTTCGTGAAGCCGCCAAAGCACAGAAATACGTTACTGAGATACTGGGACTAACTCCACCCACTGTTCCTTTCATGTCGTAA

Transcript

asel_s0090.g21.t3

AGAAATTCAACATGGCTTCTTGACTGCGCGAATTTCGTGGAAATACTTATCTGGAAACCAATATCTTTTTACCTCGCTTCATTATGAGTGCACAAGAATCGAGCGGGAGTTTGAGCAAATGGCAAATTGCCGCCCTAATCGGCGTGCCCGTTGCAACAGCTTGCGTTTTGGGGGGGGTTTACTACTGGAAGACTTCTAAAGCTTCGTCGGAGGACGACGTGGAGAAAGGAGAAACAGGAACTGCGGATGATGAAACTGCTGAAAGTAAAGATGCTAGTGAAGAGAATCGGTCTCCTGCAGAACGAGCTGCAGCGGTTAAGCTTAGAGGAAACAAGTACTTCAAGGGTGGCAAATTTGACTTGGCTATACAGTGTTACACGGAAGCCATTGAGCTCTGTCCTGAGGACAACAAGACAGACCTGGCAACGTACTACCAAAACAGAGCAGCAGCTTACGCTCAACAGGATAATTCAGAGCAAGTCATTGAAGACGCCACAAAAGCCATTGAACTAAACAAGAAGTATTCCAAAGCTTTCATGAAGAGAGCAAGGGCATATGAGCTACTCAACAGGAAGGAAGATTGTCTGCGAGCTTCGTCGGAGGACGACGTGGAGAAAGGAGAAACAGGAACTGCGGATGATGAAACTGCTGAAAGTAAAGATGCTAGTGAAGAGAATCGGTCTCCTGCAGAACGAGCTGCAGCGGTTAAGCTTAGAGGAAACAAGTACTTCAAGGGTGGCAAATTTGACTTGGCTATACAGTGTTACACGGAAGCCATTGAGCTCTGTCCTGAGGACAACAAGACAGACCTGGCAACGTACTACCAAAACAGAGCAGCAGCTTACGCTCAACAGGATAACTCAGAGCAAGTCATTGAAGACGCCACTAAAGCCATTGAACTAAACAAGAAGTATTCCAAAGCTTTCATGAAGAGAGCAAGGGCATATGAGCTACTGAACAGGAAGGAAGATTGTCTGCGAGATCTTACTGCAGTTTGTATGATTGAGGGGTTTAATAATCCAAACTGGATGGTACAGGCCGATAGAGTCCTAAAAGAAATAGGAAAAGAGAAAGCTCAAGAATATTACAAGACCAGGAAACCTACTTTGCCCTCACCAACATACATCAAAGCTTATTTAGAGTCATTCTGTCATGATGACACATTAGAAGTTAATCTGGAGGAAGATTCATCTGAGGAATCAAGTTTCCTTGAAGCTGTTAAGCAAATGAAAGGGAAGGAATATGAAAATATATTGGACCTTTGCACTCAGCAGATTGAGAAAGGCCCAGGGCCTTTTTATATTAGAGCCCTTGCCTTGAGAGGAACAATGTACACATTGATATCAAAAGTCGATGAAGCAATCAAGGATTTAACACAAGTGATAGATTCTGAGGACGAGCAGGTCTCCATCAAGCTGAAAGTTAACTGCTTGATCAAACGAGGAAGCATGCACCTCCAAGCCACAATGTTGAAAGAGTGTGTGGAAGACTTCACGAAGGCAATATCCCTTGATCCTGACAACTCTGATATTTATCACCACAGAGGACAGATTAACTTTTTGTCAGAGAAGCTAACAGAGGCTAAAGAAGATTTTGAGAAGTGTATATCACTGAACAACAGCTTCATTCCTGCCAAGATTCAGCTGGCTTATTCTATATACAAGTCGGCTGCACTTCAGCAGTCGCCTATCTTGGCACAAGGAGCTGTGGAAATGTTGCAGAAAACGGTTGAGAAATACCCCGATTCTGCCGATGCTCACAGCCTATTTGCACAGGTTTTACAGGATATGCAGCAGTTCGCAAAAGCCGAGGAACATTTTGACCTCGCCATAAAGGCTGAACCAAAGAATCCTGTCCATTTGGTTTACAAAGGCATGCTGATGTTGCAGTGGCGACAAGACGTAGAAAAGGCCGCTGACTTAGTTAACGAAGCCTTGGTAATCGACGATAAGTGTGACTTTGCTTACGAGACCCTGGCTACCCTCGAGGTGCAAAGGGGCCATTTAGACAAAGCAATTGAGCTGTTCAACAAAGCCATCGAGTTAGTGAGAACAGAAGCAGAGTTGGCGCAAACGTTCTCCCTTCGTGAAGCCGCCAAAGCACAGAAATACGTTACTGAGATACTGGGACTAACTCCACCCACTGTTCCTTTCATGTCGTAAGAGACCCGAGAGAGCATTGAGGGAAAGAACCTAGTAGCTCTGGAATCAAAGGAGTACAGGGTGTGGTTTGATAGTTTAGAACCATACCCAAAGGACAAAAAGTGTTCCATGCCAATAACGATAAAAAAAAATTGTCCTCTCGCTAGAGACAGAGNNNNNNNNNNNNNNNNNNNNNNGCGGATTACTTTCTTGGACTCCTTTTGTGTTATCCAGCAAGGTCCATCCAACAGCAAAACCAATCAGACCGCGTTTGTAGTGAAACTAATTAAAAGTGAACAACAGGAAGACGGAGATATCTTTAGCCTCTGTTGTTTTAGAAATGGGCACGTGAATTACACCTGATTTAAGCTGCTGTTGCTAGCCTTGTCCAATTGGAAAAGAGATACCGAACCTCTTCAGCATGATCCTTTCGTTTTATTAACTCTGATCACGTGATAATCCATTGGGAATATTCCGCATTTGCACGTTACaagaaacgtttccctagtgtaacatcacgtggtccgaaaccggaaataagctcaagaggtgtaAGATGCGACTGGCGCCAAATCATTCTCCTACTATCCCTGTCATTCAAGGTTTTTCAAGTTGATTTAAGTTCTGTGTATTGATAAAAATGGTGAAAAATGAACAGAGCGTCTTCGTAAAATTTCAGTTTTCACCAGTTCGCAAACCATGTTTGGTTGATCATACATGTCTGGCATGAAAATCAGAGGTAGGCAAACCCGTGACTGAGTCTTTA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q75Q39	Mitochondrial import receptor subunit TOM70 OS=Rattus norvegicus OX=10116 GN=Tomm70 PE=1 SV=1
Q9CZW5	Mitochondrial import receptor subunit TOM70 OS=Mus musculus OX=10090 GN=Tomm70 PE=1 SV=2
O94826	Mitochondrial import receptor subunit TOM70 OS=Homo sapiens OX=9606 GN=TOMM70 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0007265 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13181 all species →	TPR_8	Tetratricopeptide repeat	Repeat	Interproscan
PF00515 all species →	TPR_1	Tetratricopeptide repeat	Repeat	Interproscan
PF14559 all species →	TPR_19	Tetratricopeptide repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011990 all species →	Homologous_superfamily	Tetratricopeptide-like helical domain superfamily	Interproscan
IPR019734 all species →	Repeat	Tetratricopeptide repeat	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46208 all species →	MITOCHONDRIAL IMPORT RECEPTOR SUBUNIT TOM70	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0008320 all species →	Molecular Function	protein transmembrane transporter activity	Interproscan
GO:0030150 all species →	Biological Process	protein import into mitochondrial matrix	Interproscan
GO:0030943 all species →	Molecular Function	mitochondrion targeting sequence binding	Interproscan
GO:0031307 all species →	Cellular Component	obsolete integral component of mitochondrial outer membrane	Interproscan
GO:0045039 all species →	Biological Process	protein insertion into mitochondrial inner membrane	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K17768	TOM70; mitochondrial import receptor subunit TOM70	-	Transporters	ko02000	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.