Gene detail

Detailed information of asel_s0091.g52.t1 in Acropora selago

Genomic Location: sc0000091_pilon:703961...725561
NR annotation: XP_029186838.2, LOW QUALITY PROTEIN: rho guanine nucleotide exchange factor 12-like [Acropora millepora]
Species Acropora selago · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

asel_s0091.g52.t1

CTGGAAAACTAGGAGATTTGTTTTGCTCGATCATTTGTCTCGACCGCATATTACGCCAGAGTGAGCAAGGGCAAATTATTTTCACACGGAAAGGAGTCAGATACGGCTTTTAGTATCTTAAGGAGTTACTTCTTCTTTCAAGAAAGTCAGTCTCGTTCGAATACCGGGAATCAGAAGAAAAGGCTTCAATCTGGGACACTACGAAAACTGGGAAATTTGGCAGATCTTCTCAACTTATTTCAAGTATCTGAATCGATAATTTGTTTGAATTAATGGTTTCGTGTGATTTCAAGCGATACAATCGATGTATCGAAAAGTGAAAGAATGGAATGAATTCCATTCGTGTCCATTGCCACAAGTCGATAGTGCAGAAAGGCTGACCCCGTCGCAAGGGTTTTATCGTAATGGAGCCAGCTGAAAATCAAGAAGGTCAGCACTTGATCCAACATTGTGTCATAATCCAGCGAGATGAGAAAGGATATGGCCTGACAGTTACTGGAGATAATCCAGTTTACGTACAGTCTGTGAAAGAAGGAGGAGCAGCACATCGGACTGGTGTTCAAGTTGGTGATAAGATTATAAAGGTCAATGGAACCCTAGTGACACATTTCAACCATGCTGAAGTTGTTGACCTTATTAAATCTGGCTCTTACGTTGCATTGACACTTCTTGGAAAACCTCCGGCACATCTTCATGGTGAGAGGCATGACTCAACATCAACACCAGTAATGTTGCCAAGGGATCCAGTGAGAGATGAGAGAGTAATGTCTGTTCAACGAGTGCTTGACCAAGAAAAGCAGTTTTATAAGAAAACAAGAGAGGAGTACATAAGAAAGCCATCGGAAAAGTTACAAAAAGAGCTTGCAGAATCAACAACTCGAATCAAAACTGCTGAAGCGCAATTGAATGCCTTAATGCAAGCACAGCCTGATTTTTCCAATAATGGTCCCTTCTCAGCACCACCTGGGAAAACTGTACCCCCAGTTTGGCAGTCAGTGACTCAGATACCGAGCAGGTGTCACTCAGTTCCAGCTGAAGACAACGTGGAGCAGGATCCCAATGCACTGTATGACAACTACCCACTGTCAGCTATTATACCCAATAGTGAAACTGCTGACAAAGGACCTCAGAGGTCATCAACACCACCTCTTCCCCCAGAGAGAAAGTTTGTTCCTTCCGGAGACCAGCTGGGGATAAGAGAGGGATCAGGCCATTCCAGGCAAGGTTCTAGTCCAGCAGCTTTTTATCGTTCTTCACCAAATGGGAGTCAACAGGACAAAACTTTCCATGTTAGAAACAATGTCAAGAACAAAAGTCATGATGATGCCTCAGGAATGCACTTGGGCTCTCCTGCAAGAATGCGAAGAAATATCTTGACGTCGTCACTCCCCATGGCTTGGACTCCTCACAATCCTGAGAAACATGCACTACAGCTGAGTGCCTTAACTGGAAAAGGGAATTTTTATAACACTGGTTCACCTCCACCAACACCCACATCTGTACATGAGCCAATGGAGAGGCGAAATCGTGATGACTTTGTAGAAATGGCCAATGAGAGGGATGATAGTAACAGGGCTGGTGTTATACATGCTAGCCCATCTTGTAATTCTATTATGTCTATGGAAGATGACGACTTTGCTTCGGATGACGAGAAGATTGATGACCATGGGCCATTCAATGGTTTAGACTTGCTGAAAAATAAACCAGCTCACCTTGCAGTTTTCCTGCATTATCTTATATCCAACAATGATCCAAGTAGTCTGTTCTTTTGGCTTGTAACTGATTCTTACAAGGAGGGAACCCCCAAGGAAATGAAGAAGTGGTTTTACGAGATCTACTCTACATTTCTGGCTGATCGAGCTCCTCTCAAAGTGGATTTGGATAAAGAAACCATTGTGCAACCCATTGAAAAATGTCTTGGATCTGAAGATAATTTAAAGGAAGTTTTTGAAAAAGCAAGGGTTGCTGCTGGAATTGAATTAGCTGATTTGTTAGCAGGCTTCAGGGAGAAAAGGGCACTTGGCCTTGGGAGTTTGTTTGGTGATCAGCATCTGACTGATGATGACATGGACAAGGCAAAGGAACTTCAAGTTGTGGAGCAGACTCTGATTCCACATCTGGAAAGTGTATTGGCAGAAATAGATTCAAATGCTAATGCAGATGCGTCTCAGATGGATAGAAACTCTGCAATGGCCTCTGCGTTGACAACATTCTTAAAACAAGTTGGAGTTACCATTAAGCAACAGGGAAACAGTACAAATGTCTTAGACAGATGTTCAAGTTTCACACGGAAAGAGAACAAAATACTATTTAAAATAAAATCAAGTAAAAAGCAAAGGACACCATTTTGTTAGTACACATTACACCAGTTTGACATTTTGCAATCACTGCAATGGCCTCCTTTGGGGGATTGGAGATCAAGGCTACCAGTGTTCAGCATGTGAGTACAATGTCCACAAAGGAAACTGTTTCGAAGCAATTGAAGATTGCCCAGGACCCAAGAAGAAAAGAAAACCAATCCCTGCTACAGTATTGATGCCTGCTGTTAACCCTAGGAAACCAAGTCAATCTTGTAAGAATCAGTTACATGTCTGTATCAGTATTAAGAAATTATTGAATCATAAGCAAGAACAAAGAGTAATAATAATAATTGGAATTCAGAAAGTCAAGATGAGGATCAGGAAACCCAAAACGGAGTTGATAGCAAATCAAAAAGAAGCTCACTT

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9NZN5	Rho guanine nucleotide exchange factor 12 OS=Homo sapiens OX=9606 GN=ARHGEF12 PE=1 SV=1
Q8R4H2	Rho guanine nucleotide exchange factor 12 OS=Mus musculus OX=10090 GN=Arhgef12 PE=1 SV=2
O15085	Rho guanine nucleotide exchange factor 11 OS=Homo sapiens OX=9606 GN=ARHGEF11 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001658 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00595 all species →	PDZ	PDZ domain	Domain	Interproscan
PF09128 all species →	RGS-like	Regulator of G protein signalling-like domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR016137 all species →	Domain	RGS domain	Interproscan
IPR036034 all species →	Homologous_superfamily	PDZ superfamily	Interproscan
IPR001478 all species →	Domain	PDZ domain	Interproscan
IPR036305 all species →	Homologous_superfamily	RGS domain superfamily	Interproscan
IPR015212 all species →	Domain	Regulator of G protein signalling-like domain	Interproscan
IPR044926 all species →	Homologous_superfamily	RGS, subdomain 2	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45872 all species →	RHO GUANINE NUCLEOTIDE EXCHANGE FACTOR 2, ISOFORM D	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0001664 all species →	Molecular Function	G protein-coupled receptor binding	Interproscan
GO:0005085 all species →	Molecular Function	guanyl-nucleotide exchange factor activity	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0007186 all species →	Biological Process	G protein-coupled receptor signaling pathway	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for asel_s0091.g52.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.