Gene detail

Detailed information of asel_s0091.g53.t1 in Acropora selago

Genomic Location: sc0000091_pilon:727191...752178
NR annotation: XP_029186838.2, LOW QUALITY PROTEIN: rho guanine nucleotide exchange factor 12-like [Acropora millepora]
Species Acropora selago · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

asel_s0091.g53.t1

ATGAAGAAAAAGAGAAAATCTGCAATAACCATGGATTCATCCAGTAATTCTGACAGCTTTCTTGCAAGAGGAGATTCCACTTTAATGGACCCACTCTCTGAAGATGAGGAAGAGCTGGATCCAGATATGACTGTTGATGCCCAACCTCCTCCTTGGCAACAAATTGTGGATAAAAAGGTTCTCAGAAAGCTTAAAACAAAGGAAATAAAGCGCCAGGAATTCATTCATGAGCTTATTCATACTGAAAGAACCCATGTCAGGAATTTGAAAGTATTAAGCAAGGTGTTTTATAAGCCAATGTTGAAAATGAACGTGATGTTTAAACAGGAGATCAATCAACTTTTTCCAAACTTAGATGCACTGATGCAAATTCATGTTTCTCTCATGGCAAGCATGATGAAAAGACAGAAAGAAGAGGCTGACGTCATCACACGTATTGGGGATGTCATGCTGGAGAGGTTTGATGGTGAACCTGGGGAAATAGCCAAGGATGCCTGTGCTGAATTCTGTAAAAATCAAAAACTAGCTTTGGAGCAGCTAAAGAATCGGCGAAAAAAAGAATTTAAGTTGGAACAATTTATTACTAACTGTGAAAATGATCCCCTTTGTCGGCGGTTACGACTTCAAGATATCATTTCGTCTAGCTATCAAAGATTCACCAAATACCCATTATTGCTGGAAGGCATACAGACAAATACCCCAAACTCTCACGTTGATAGTAAAAACATCGAGAGGGCGATTAAGTGTACAAAGGATTTACTAGCTTTCGTGAATCAAAGTGTAAAAGATTGCGAAAATCAACAGAAACTTGCTGATCTTCAAAAAAAAATTGATAGAAGATCCATTGAGAGTACTAACAACAAAACAATGGAAGAATTCAAGGACTTGGATCTGACTAAAAAGAAGTTAGTTTACGATGGAGATTTGACATGGAGAATAAGTAGAACCAAGTCTGTTGATCTCCACGTGTTGTTGTTAGAAGATTTGTTAATTCTACTTCAAAAGCAGGACGACAAATATGTCCTGAAGTGTTTGGGTACCACTGTCATAGCTGGTTACCAAGACACCAAGACCACCCACAGTCCAATAATCAAACTGAATGGCGTGTTGGCAAGAAATGTGGCAACTGACAAGAGGGCATTTTTTCTTGTCAGCACATCAGCCACTGTGGGACCTCAGATTTATGAGTTAGTGACAGCTACGGTGACAGATCGCAAAAACTGGTACAAGTACATTACAGATACCGCTGAGGCATTCAAAGTGAAAGAGAGAGGTCGTCGAGATGCCTTTTCGGTTGGCGGTCAGCAAAGAGCGATGGATGTAAATGAGATTAATGAAATACCCAGCAAAAGCCCCGTGAAAGAAGAGGAGGAATCTGTCGACAGAGACAAGCTTGTGGGGACAAATGCAGATGAAGAAGAAAGAGAAAAAGCTACggatttggatgaggatgatgactcagatgaaattgatgtgaagaacaatgaggaggaggaggacgtagacgaggaggaggaggatgaAACAGAAAGCGAAGCACCCACATCACCAGAAGAAGCACCAGCAAGTAAAATGGCGGAGCGGCCACTGAGGCTCGAATCACAGGCTGATAGTGAGTCTGATAATGATAATGAGACTGAACGTGACTCGGACGCAGAGTCGGAATCGGACCCGACGGATGTTCCTAAGCAAAACTCAAGCTTGGAGAATGATTCACCTACCAAACGACGCTTAATGAACGAGTCAAGTCCGGCCAGTGATTCAGAGACTGATGTTCTCTCAGCCGAAGACAGCGAATCACAGAGCTCGTCAGTTCTAAACCAGGCTTCCCTGGCACAGTTGACAAACGAGGAGAGCGTGGATGACAGATCTCTATCAACAGAACGAAACAGTGTGATTTCGGATAGTTCATCGAGTTCTTCGAATGATACAATGAAGATCCGAGGGAGTCTTCCCAATATGCAGTCTGAAGAGCAGGTTGATTCTCCAAGTACTCCGTCATTCCGATCGTCGGTTATGTTACTCGAACTACTGAGGTCGAAAGACGAAGAGCTTCGCAGAACATTGGAAGAAAAATCCAGACTGGTTGCAGAGCTAAGGGGAGCCAACATGACGACGGGGACAACAACAAGTGAAAGCAACATCAACAGTGACTCTATGGAGGCAAGGGATTTAATACTTGCAGCAATTCTTCAAGCCAATCGTTTGACAGTTGCTGTGAGTGATGTACTTAATCCCAATGTAGATGACATGTCTCGTGGAATGGGGTATGATGGCGTTAACGCGGTCTTCTCGCCTCAGCAACAACTTGTTTCATCGACGTCTGTTTTAAACGAACAGCTCACAACGTTACTTAGTGTTATTACGGATCGAGACATGGCTAGAGAAAGATTGCGGTGTGATCTTCAATACGCTAACTCGCAAATTCAGCGCTACAAGCAGGGCCGTTCGTCCTCTCGTCGCCCTAGAGAGCTTCCCGGCTCACAGTTTTCGTTAAATGACGATAATTTGTCAGGAGGATTTCACTCCGATTCACCTCGACCTTCCTCTCCAACATCTACCATCGATTTAGACTCTGATTACGCGCGATTGTCAGAGGCAAGTGACTATTTAGCTTCCGAAGACAATATGGAGTCAGTCGCTCGTTCGTCGTCCTTCTCCTCTAGTTATCGGACGAGAAGTTCATTGGCCTCCAGTGGGTACCGTTCATCGACGACATCTTCTCGGGACACGTGGCGCTCTCGCGAGGAATCTCCAACAGCACAATGGCGGCGAGGAGGAGGTCGTTCTACCATCAGGACCTGCTGGAGCGACGAAGGGGCCGAGTACGAGTCCCAATCGCAAATATAG

Transcript

asel_s0091.g53.t1

CACTAAAAGTCTCTTTTCAGTCTAAACATGTTCTTGCTTTGCTTTTTTCCAAGCAGGATGGAATGCCAAGGTATAGGAGTGAATCGTGCCTTGATAAACCTCCACCAACAAAAAACATTGCAAGGGCAGAGACAATGAGAGAGTTCAGGACAACAAGGGAATTGGGGCCATCTATGAAGAAAAAGAGAAAATCTGCAATAACCATGGATTCATCCAGTAATTCTGACAGCTTTCTTGCAAGAGGAGATTCCACTTTAATGGACCCACTCTCTGAAGATGAGGAAGAGCTGGATCCAGATATGACTGTTGATGCCCAACCTCCTCCTTGGCAACAAATTGTGGATAAAAAGGTTCTCAGAAAGCTTAAAACAAAGGAAATAAAGCGCCAGGAATTCATTCATGAGCTTATTCATACTGAAAGAACCCATGTCAGGAATTTGAAAGTATTAAGCAAGGTGTTTTATAAGCCAATGTTGAAAATGAACGTGATGTTTAAACAGGAGATCAATCAACTTTTTCCAAACTTAGATGCACTGATGCAAATTCATGTTTCTCTCATGGCAAGCATGATGAAAAGACAGAAAGAAGAGGCTGACGTCATCACACGTATTGGGGATGTCATGCTGGAGAGGTTTGATGGTGAACCTGGGGAAATAGCCAAGGATGCCTGTGCTGAATTCTGTAAAAATCAAAAACTAGCTTTGGAGCAGCTAAAGAATCGGCGAAAAAAAGAATTTAAGTTGGAACAATTTATTACTAACTGTGAAAATGATCCCCTTTGTCGGCGGTTACGACTTCAAGATATCATTTCGTCTAGCTATCAAAGATTCACCAAATACCCATTATTGCTGGAAGGCATACAGACAAATACCCCAAACTCTCACGTTGATAGTAAAAACATCGAGAGGGCGATTAAGTGTACAAAGGATTTACTAGCTTTCGTGAATCAAAGTGTAAAAGATTGCGAAAATCAACAGAAACTTGCTGATCTTCAAAAAAAAATTGATAGAAGATCCATTGAGAGTACTAACAACAAAACAATGGAAGAATTCAAGGACTTGGATCTGACTAAAAAGAAGTTAGTTTACGATGGAGATTTGACATGGAGAATAAGTAGAACCAAGTCTGTTGATCTCCACGTGTTGTTGTTAGAAGATTTGTTAATTCTACTTCAAAAGCAGGACGACAAATATGTCCTGAAGTGTTTGGGTACCACTGTCATAGCTGGTTACCAAGACACCAAGACCACCCACAGTCCAATAATCAAACTGAATGGCGTGTTGGCAAGAAATGTGGCAACTGACAAGAGGGCATTTTTTCTTGTCAGCACATCAGCCACTGTGGGACCTCAGATTTATGAGTTAGTGACAGCTACGGTGACAGATCGCAAAAACTGGTACAAGTACATTACAGATACCGCTGAGGCATTCAAAGTGAAAGAGAGAGGTCGTCGAGATGCCTTTTCGGTTGGCGGTCAGCAAAGAGCGATGGATGTAAATGAGATTAATGAAATACCCAGCAAAAGCCCCGTGAAAGAAGAGGAGGAATCTGTCGACAGAGACAAGCTTGTGGGGACAAATGCAGATGAAGAAGAAAGAGAAAAAGCTACggatttggatgaggatgatgactcagatgaaattgatgtgaagaacaatgaggaggaggaggacgtagacgaggaggaggaggatgaAACAGAAAGCGAAGCACCCACATCACCAGAAGAAGCACCAGCAAGTAAAATGGCGGAGCGGCCACTGAGGCTCGAATCACAGGCTGATAGTGAGTCTGATAATGATAATGAGACTGAACGTGACTCGGACGCAGAGTCGGAATCGGACCCGACGGATGTTCCTAAGCAAAACTCAAGCTTGGAGAATGATTCACCTACCAAACGACGCTTAATGAACGAGTCAAGTCCGGCCAGTGATTCAGAGACTGATGTTCTCTCAGCCGAAGACAGCGAATCACAGAGCTCGTCAGTTCTAAACCAGGCTTCCCTGGCACAGTTGACAAACGAGGAGAGCGTGGATGACAGATCTCTATCAACAGAACGAAACAGTGTGATTTCGGATAGTTCATCGAGTTCTTCGAATGATACAATGAAGATCCGAGGGAGTCTTCCCAATATGCAGTCTGAAGAGCAGGTTGATTCTCCAAGTACTCCGTCATTCCGATCGTCGGTTATGTTACTCGAACTACTGAGGTCGAAAGACGAAGAGCTTCGCAGAACATTGGAAGAAAAATCCAGACTGGTTGCAGAGCTAAGGGGAGCCAACATGACGACGGGGACAACAACAAGTGAAAGCAACATCAACAGTGACTCTATGGAGGCAAGGGATTTAATACTTGCAGCAATTCTTCAAGCCAATCGTTTGACAGTTGCTGTGAGTGATGTACTTAATCCCAATGTAGATGACATGTCTCGTGGAATGGGGTATGATGGCGTTAACGCGGTCTTCTCGCCTCAGCAACAACTTGTTTCATCGACGTCTGTTTTAAACGAACAGCTCACAACGTTACTTAGTGTTATTACGGATCGAGACATGGCTAGAGAAAGATTGCGGTGTGATCTTCAATACGCTAACTCGCAAATTCAGCGCTACAAGCAGGGCCGTTCGTCCTCTCGTCGCCCTAGAGAGCTTCCCGGCTCACAGTTTTCGTTAAATGACGATAATTTGTCAGGAGGATTTCACTCCGATTCACCTCGACCTTCCTCTCCAACATCTACCATCGATTTAGACTCTGATTACGCGCGATTGTCAGAGGCAAGTGACTATTTAGCTTCCGAAGACAATATGGAGTCAGTCGCTCGTTCGTCGTCCTTCTCCTCTAGTTATCGGACGAGAAGTTCATTGGCCTCCAGTGGGTACCGTTCATCGACGACATCTTCTCGGGACACGTGGCGCTCTCGCGAGGAATCTCCAACAGCACAATGGCGGCGAGGAGGAGGTCGTTCTACCATCAGGACCTGCTGGAGCGACGAAGGGGCCGAGTACGAGTCCCAATCGCAAATATAGATCAATGACACTTCGAGTGTGCCGGCTGCTCTCGAAACCAACACAAATCCTTTTTTGTGGAGTGTCAGTGATAGATTTTTAACTGACGATTTCAGTAGTTTGAGAATTAGAATGGTTAGTTTTGAACCTTTGAAAGAAACAAGTGCATTGTTCACTGGCCAAACATTAGCTTGTTGCCATGGAACCGATATGAAGGCGACTCTGAGCTTTATTGACTATCAGCAAACCTTTTCATGGTTCTGTCTGGCAAGGTTTGACCAAGTTAGTGGAAGATGAAACTGCTAATGGTTGTGGTTACTCTTGACTTAGTTAAAATCTCTTCGAACGTTCCTTAATGTAATTCCTTCTGCTTCTTTTAGAGTTAGTTCTCCCTGTGGTTTTCAATAATAAGCGGTGCTTTCA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
O15085	Rho guanine nucleotide exchange factor 11 OS=Homo sapiens OX=9606 GN=ARHGEF11 PE=1 SV=1
Q9NZN5	Rho guanine nucleotide exchange factor 12 OS=Homo sapiens OX=9606 GN=ARHGEF12 PE=1 SV=1
Q9ES67	Rho guanine nucleotide exchange factor 11 OS=Rattus norvegicus OX=10116 GN=Arhgef11 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001658 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00621 all species →	RhoGEF	RhoGEF domain	Domain	Interproscan
PF17838 all species →	PH_16	PH domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000219 all species →	Domain	Dbl homology (DH) domain	Interproscan
IPR035899 all species →	Homologous_superfamily	Dbl homology (DH) domain superfamily	Interproscan
IPR001849 all species →	Domain	Pleckstrin homology domain	Interproscan
IPR011993 all species →	Homologous_superfamily	PH-like domain superfamily	Interproscan
IPR041020 all species →	Domain	ARHGEF1-like, PH domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45872 all species →	RHO GUANINE NUCLEOTIDE EXCHANGE FACTOR 2, ISOFORM D	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005085 all species →	Molecular Function	guanyl-nucleotide exchange factor activity	Interproscan
GO:0001664 all species →	Molecular Function	G protein-coupled receptor binding	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0007186 all species →	Biological Process	G protein-coupled receptor signaling pathway	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for asel_s0091.g53.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.