Gene detail

Detailed information of asel_s0092.g8.t2 in Acropora selago

Genomic Location: sc0000092_pilon:188882...220805
NR annotation: XP_029209361.2, serine/threonine-protein kinase rio2-like [Acropora millepora]
Species Acropora selago · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

asel_s0092.g8.t2

ATGTTACGGTACCTCTCATCTGAGGAATTCAGAGTCCTGACAGCGGTGGAAATGGGTATGAAAAATCATGAGCTTGTACCACCATCCCTTGTGGCCTCTATAGCTGACTTGAAACATGGTGGAACCCACAAGATTCTTCGTGAGCTCTCAAAACATAAATTATTGTGCTATGAAAAGTCTGGGCGTGTGGAAGGATACAGACTTACATTCAGTGGTTATGATTATCTTGCATTAAAGGCACTGACAGCACGGGGCAGTCTACATTCTGTTGGAAATCAAATTGGAGTAGGAAAGGAATCTGGCAATCCTGTCCTGTTTTTGTTTTTCTCAAGGTCTCAAGTTCATGACATTGGTGATCCATTGTCATTATACAGTGACTTGATGGATTTGATTGTTCTTCTTGGTAGCTACGGGCTGATTCACTGCGATTTTAATGAATTCAACTTGATGCTGGATGAGAACGATAAAGTTACTGTCATTGATTTTCCGCAGATGGTGTCAATTTCTCATCCAAATGCCCAATGGTATTTTGACAGAGATGTCCAGTGTATCAGGGATTTCTTCTTTCGACGCTTTTCGTTAGAAAGCGAACTTTATCCAAAGTTTGCTGATGTAAAGCGAATGCATAACCTAGACGTTGAAGTGGCGGCCAGCGGTTTCACGCGGGACATGTCCAAATCGTTTGATGAGAGAAGGCCGATGGAGGATATTCCTCCCGGGGAACTGAACAGTCTCCTTGCCCATTTTTTCATCAAAGTCAGAAAACTTAACGGAGAAGAGTTCGAGCCAGGAACTTTAACTTCGTTTCAACGAAGTTTCGACCGCTATTTACGACAACACGGAAAGAATTACAACATCATTCAAGATAAGATCTTTGAAAGTTCCCGCGAGGCGTTGGAGTCAAAACGAAAGCAACTAAGGCTGTCAGGTAAAGGAACTCGTCCAAACAAGGCGCTGGGTTTAACAAACGACGAGCTTGAAAAGTTTTGGAGCGAGAAACAGCTTGGAGACCATTCGCCTGAAGCTCTTCTCCGTACAGTTTGGTTGAACAACACCATGCATTTCGGCTGGCGTGCGCGTGACGAGCATCGGAAAGTTCTGCTCGGAGACCTTGAGATACGACAAGAAGAAGGCGGCGAAGGGAGAGAATACGTCATATGGAAAACGGAGCGAGGATCCAAGACAAGAACCGTGGAAGGATACAGACTTACATTCAGTGGTTATGATTATCTTGCATTAAAGGCACTGACAGCACGGGGCAGTGTATACTCTGTTGGAAATCAAATTGGAGTAGGAAAGGAATCTGATATTTATATTGTTGCTGATGAAGAAGAGAATCAACTTGCTCTTAAACTACACAGGTTCGTAACACCTGAGGTGTACCTAAGTAGTGTAATACAGCTGGCATTTTGCCTTGAGCAGCATGCTAAAGAAAATGACCCCAAAGGCAATCCTGTCCTGTTTTTCTTTTTCTCAAGGTCTCAAGTTCATGACATTGGTGATCCATTGTCATTATACAGTGACTTGATGGATTTGATTGTTCTTCTTGGTAGCTACGGGCTGATTCACTGCGATTTTAATGAATTCAACTTGATGCTGGATGAGAATGATAAAGTTACTGTCATTGATTTTCCGCAGATGGTGTCCATTTCTCATCCAAATGCCCAATGGTATTTTGACAGAGATGTCCAGTGTATCAGGGATTTCTTCTTTCGACGCTTTTCGTTAGAAAGCGAGCTTTATCCAAAGTTTGCTGATGTAAAGCGAATGCATAACCTAGACGTTGAAGTTGCGGCCAGCGGTTTCACGCGGGACATGTCCAAATCGTTTGATGAGGCCGCCGCTGACCTCAAAGAAATCGATGACGGAGATTTTGAGGATAGTGACGAAACTGCGCAAGCGCAGGATGTagaggaagaagaggaagaagaatacaaaggcgatgatgatgaaggagGAACTGAGGAAGAATGTACTCCTGAACACGGCGTTTCAGATGATCAACAAACAAGAGATGACTATGCTGCAGAGACAGGTGATAAACTTGAAGTGAACACATGTGAAACGGATAAACAAGAACAGAGCGAAGACTTTGAACTAGAGGGGCTGAGCAATCAAAATAAAATGCATCGGCCCTATCGCGATACCAAGAGCCACGTGACTGAGGTGTGTTCAGATGACGATGTCAGAAGTCAAACAAGTTGCACTACAACGTCAACTTTTGACTCCAGCGAGATTAGAGCCCGAGTGAAAAAGAGTTTAGAAAAGAAACAACGCGCCATGCGCAGAAGAAAGCGAGGCGAAGCGTCCGCTGTAACGCGGTCGAGGCGCGAAAACAGGGAAGTTGTTAAGCAAGGCGAAGATTCGTGGAATGACTTTTGGTGA

Transcript

asel_s0092.g8.t2

CTGAGTTAGAAGTGCACCATGCCTGACAAAATGACTTCTTAGGACAACAGTTAGGGCATTTGGTTTTCTTCAAAGATCCAACAATGGGTAAGCTTAACGTATCGATGTTACGGTACCTCTCATCTGAGGAATTCAGAGTCCTGACAGCGGTGGAAATGGGTATGAAAAATCATGAGCTTGTACCACCATCCCTTGTGGCCTCTATAGCTGACTTGAAACATGGTGGAACCCACAAGATTCTTCGTGAGCTCTCAAAACATAAATTATTGTGCTATGAAAAGTCTGGGCGTGTGGAAGGATACAGACTTACATTCAGTGGTTATGATTATCTTGCATTAAAGGCACTGACAGCACGGGGCAGTCTACATTCTGTTGGAAATCAAATTGGAGTAGGAAAGGAATCTGGCAATCCTGTCCTGTTTTTGTTTTTCTCAAGGTCTCAAGTTCATGACATTGGTGATCCATTGTCATTATACAGTGACTTGATGGATTTGATTGTTCTTCTTGGTAGCTACGGGCTGATTCACTGCGATTTTAATGAATTCAACTTGATGCTGGATGAGAACGATAAAGTTACTGTCATTGATTTTCCGCAGATGGTGTCAATTTCTCATCCAAATGCCCAATGGTATTTTGACAGAGATGTCCAGTGTATCAGGGATTTCTTCTTTCGACGCTTTTCGTTAGAAAGCGAACTTTATCCAAAGTTTGCTGATGTAAAGCGAATGCATAACCTAGACGTTGAAGTGGCGGCCAGCGGTTTCACGCGGGACATGTCCAAATCGTTTGATGAGAGAAGGCCGATGGAGGATATTCCTCCCGGGGAACTGAACAGTCTCCTTGCCCATTTTTTCATCAAAGTCAGAAAACTTAACGGAGAAGAGTTCGAGCCAGGAACTTTAACTTCGTTTCAACGAAGTTTCGACCGCTATTTACGACAACACGGAAAGAATTACAACATCATTCAAGATAAGATCTTTGAAAGTTCCCGCGAGGCGTTGGAGTCAAAACGAAAGCAACTAAGGCTGTCAGGTAAAGGAACTCGTCCAAACAAGGCGCTGGGTTTAACAAACGACGAGCTTGAAAAGTTTTGGAGCGAGAAACAGCTTGGAGACCATTCGCCTGAAGCTCTTCTCCGTACAGTTTGGTTGAACAACACCATGCATTTCGGCTGGCGTGCGCGTGACGAGCATCGGAAAGTTCTGCTCGGAGACCTTGAGATACGACAAGAAGAAGGCGGCGAAGGGAGAGAATACGTCATATGGAAAACGGAGCGAGGATCCAAGACAAGAACCGTGGAAGGATACAGACTTACATTCAGTGGTTATGATTATCTTGCATTAAAGGCACTGACAGCACGGGGCAGTGTATACTCTGTTGGAAATCAAATTGGAGTAGGAAAGGAATCTGATATTTATATTGTTGCTGATGAAGAAGAGAATCAACTTGCTCTTAAACTACACAGGTTCGTAACACCTGAGGTGTACCTAAGTAGTGTAATACAGCTGGCATTTTGCCTTGAGCAGCATGCTAAAGAAAATGACCCCAAAGGCAATCCTGTCCTGTTTTTCTTTTTCTCAAGGTCTCAAGTTCATGACATTGGTGATCCATTGTCATTATACAGTGACTTGATGGATTTGATTGTTCTTCTTGGTAGCTACGGGCTGATTCACTGCGATTTTAATGAATTCAACTTGATGCTGGATGAGAATGATAAAGTTACTGTCATTGATTTTCCGCAGATGGTGTCCATTTCTCATCCAAATGCCCAATGGTATTTTGACAGAGATGTCCAGTGTATCAGGGATTTCTTCTTTCGACGCTTTTCGTTAGAAAGCGAGCTTTATCCAAAGTTTGCTGATGTAAAGCGAATGCATAACCTAGACGTTGAAGTTGCGGCCAGCGGTTTCACGCGGGACATGTCCAAATCGTTTGATGAGGCCGCCGCTGACCTCAAAGAAATCGATGACGGAGATTTTGAGGATAGTGACGAAACTGCGCAAGCGCAGGATGTagaggaagaagaggaagaagaatacaaaggcgatgatgatgaaggagGAACTGAGGAAGAATGTACTCCTGAACACGGCGTTTCAGATGATCAACAAACAAGAGATGACTATGCTGCAGAGACAGGTGATAAACTTGAAGTGAACACATGTGAAACGGATAAACAAGAACAGAGCGAAGACTTTGAACTAGAGGGGCTGAGCAATCAAAATAAAATGCATCGGCCCTATCGCGATACCAAGAGCCACGTGACTGAGGTGTGTTCAGATGACGATGTCAGAAGTCAAACAAGTTGCACTACAACGTCAACTTTTGACTCCAGCGAGATTAGAGCCCGAGTGAAAAAGAGTTTAGAAAAGAAACAACGCGCCATGCGCAGAAGAAAGCGAGGCGAAGCGTCCGCTGTAACGCGGTCGAGGCGCGAAAACAGGGAAGTTGTTAAGCAAGGCGAAGATTCGTGGAATGACTTTTGGTGAATGAAGCGCACAGCACTGAGATTGAAAAAAAAAAGGGGTAAATGCGAGCTGGGCTAAGAGACCTCACATTTTGGTTTTTGTTCCTGTTTAACTAGTCGCATCACTTTTAAACGCAAAACAAAAGCATTGAACTGGA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9CQS5	Serine/threonine-protein kinase RIO2 OS=Mus musculus OX=10090 GN=Riok2 PE=1 SV=1
Q9BVS4	Serine/threonine-protein kinase RIO2 OS=Homo sapiens OX=9606 GN=RIOK2 PE=1 SV=2
Q54T05	Serine/threonine-protein kinase rio2 OS=Dictyostelium discoideum OX=44689 GN=rio2 PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005987 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF12012 all species →	DUF3504	Domain of unknown function (DUF3504)	Family	Interproscan
PF01163 all species →	RIO1	RIO1 family	Family	Interproscan
PF09202 all species →	Rio2_N	Rio2, N-terminal	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011009 all species →	Homologous_superfamily	Protein kinase-like domain superfamily	Interproscan
IPR021893 all species →	Domain	Domain of unknown function DUF3504	Interproscan
IPR015285 all species →	Domain	RIO2 kinase winged helix domain, N-terminal	Interproscan
IPR000687 all species →	Domain	RIO kinase	Interproscan
IPR036388 all species →	Homologous_superfamily	Winged helix-like DNA-binding domain superfamily	Interproscan
IPR036390 all species →	Homologous_superfamily	Winged helix DNA-binding domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45852 all species →	SER/THR-PROTEIN KINASE RIO2	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004672 all species →	Molecular Function	protein kinase activity	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0005829 all species →	Cellular Component	cytosol	Interproscan
GO:0030490 all species →	Biological Process	maturation of SSU-rRNA	Interproscan
GO:0030688 all species →	Cellular Component	preribosome, small subunit precursor	Interproscan
GO:0004674 all species →	Molecular Function	protein serine/threonine kinase activity	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0006468 all species →	Biological Process	protein phosphorylation	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for asel_s0092.g8.t2.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.