Detailed information of asel_s0097.g33.t2 in Acropora selago

Genomic Location: sc0000097_pilon:357207...394515
NR annotation: XP_029201611.2, cilia- and flagella-associated protein 54-like [Acropora millepora]
Species Acropora selago · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q8C6S9Cilia- and flagella-associated protein 54 OS=Mus musculus OX=10090 GN=Cfap54 PE=2 SV=4
Q96N23Cilia- and flagella-associated protein 54 OS=Homo sapiens OX=9606 GN=CFAP54 PE=1 SV=3
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0002035 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF14858
all species →
CFAP54_NCilia- and flagella-associated protein 54FamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR027912
all species →
FamilyCilia- and flagella-associated protein 54Interproscan

 PANTHER
PANTHER termDescriptionSource
PTHR33487
all species →
CILIA- AND FLAGELLA-ASSOCIATED PROTEIN 54Interproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0060271
all species →
Biological Processcilium assemblyInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K25553CFAP54; cilia- and flagella-associated protein 54-Cilium and associated proteinsko03037deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of asel_s0097.g33.t2 across 24 RNA-seq samples of Acropora selago. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

24Samples
0TPM > 0
1Conditions
0.0Max TPM
0.0Mean TPM

By condition

ConditionSamplesTPM > 0 Mean TPMMax TPMMean, relative to max
coral larvae 24 0 0.00 0.00

Per sample · hover a bar for the full sample record · show / hide the sample table

Source: CnidoSite RNA-seq expression matrices (ASELA_TPM, StringTie quantification over 24 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.

TOP