Gene detail

Detailed information of asel_s0098.g23.t1 in Acropora selago

Genomic Location: sc0000098_pilon:307496...325169
NR annotation: XP_029203357.2, GMP synthase [glutamine-hydrolyzing]-like [Acropora millepora]
Species Acropora selago · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

asel_s0098.g23.t1

AGCTATTATAATGTGAAATGTCTCGCTCTTTCATTTTTCAACTTTCTTTTACACTGATTCCTTAAATTAGCAGTATAGAACGAGCATTTCTGGTACTTTGTTATCAATTCCCATAAAATTTGTATGTTCTTTTTCATGTTTCTGATTATAAATATTTATATTTTGTGTCCGGACAGCTTTtactctgcgagcagagtctctttcgatgttcctagataagttagataggttgggaagaggaaagtagactctgcctgccggctcaactttctttggtttgccgctcatccaaagaaatggatgagtcagtccagtttcgacttgtgaaacctcttttttttaatttgcgtgcatgatcaatcgccacgcatcatcaatatttttgaaatttacaacagcgtgacaatttttaactgtctaaattcccatgagtacttcctacgtatgttggttacagaaactagtttgcctgaattgagaaacttattaattttttcagtaaaaactgaaatggaaattgaaaaacttgaactatcttgggtttcaaaggaaatgattccttggtcgtcaTgtgtttgccagagttcttcgaaaatatctgtttgttttggttttgcagttactagtagtcacgtgtgactgactccgaatacgtttgaatttttaacgcatgctaaaaacgaaatgtcgcgccggctggcagtctactttcctcttctcgacttagctagaaagattgaaagagactctgctcgcagagtaGACTGCTTTCAATAATTCTGGGAACTGTATTTCCATGGACATTTTCCTCATTGTGCTCTCTCTCTCTCTTTACCAAAATTGGTAATGGAGATCTGAGTTTTTTCCCCAATGCAAAGTTCATTGGTTATAAACTTGATAAGAAGGCTTGCAAACTTTGTCGTGGACTTGTAGTTAGTGAGGTTGCTTTCTTTTCTTCCTCATCTAGCAACATCCTCATTAAATTACGCCTTCTTTGCCGTTTAGTAGTTGATTGTGATGATTTGTCTCTATGTTCCATTCTAGTATTTAGTGGAGTTGATAACTCTAGCTTGGCGGCTTTGGAGATACTTGCTTCCTTGCGTGACGTTTTCTCTGATCTTCGTTGGCCTGTGTGAAACGAATGTTTCCTGCACTTCTTGCAGAACACACTCAGGTGGTTAAACTTTCGAGGAAGCCTCAAGCACTCTTCATTATTCTTAGTGGAGTTCTTTTCGGCTTTGCTGTTATTGTTCTTCGTCTTTCCACGTTTCTTAGCTTTCCGACGCTTTGCAAGTAATCTCACCCGACAATTTTCACCTCTGAAACGTTCAAAACAGTGGGGGCAGTACTGACGCAAATTGTCCGCCGACATATCACTAGTAGTTGATTCGCTTATTTTACTGACGTAGAATCGTGACAACGTAGGATTTTGTTCGAAGCACAGCGTGGCCAACTGCCATAAATGTTCGTCACGCTGTAGACTTTCTTCAATCTCGTCGCTAGCCGCCATATTGAAGAATCACCGGAAGTGTCCGGAAATGCCTCGTAGACATTCGGATTGCTCCGCTGACTTAAGAGTATGCGCAAAAGTGTTTTTTCGAACTCGTGTAAACCGCGGGAAGTGAAGCGGAAAATGGCGGCGAACCTTAGTAAGGTGGCTGGAATGGGTTCGTGTATCAACGGTCACGTAGTACAAAACGACAACACGATGTCGGAACCACTACCAGGGCAAGAGAAAGTGGCTATTCTTGATGCCGGAGCGCAGTATGGCAAGGTCATAGATCGCAGAGTGAGGGAACTGTGTGTGGAGACTGAAATTCTTCCTTTGGACACTTCCATATATACTATTAAAGAAAAAGGATTTAGAGCCATTATCATATCTGGTGGTCCCAGTAGTGTTTATGCTGAAGATGCTCCAAAATATGATCCAGCCATTTTCAGCATTGGAATTCCAGTCTTAGGAATATGCTATGGCATGCAGATGCTCAATAAAGAATTTGGAGGAACTGTCCTGAAAAAGGACATTAGAGAAGATGGACAGTTCAAGATCACTGTGGAAACATCATCACCAATCTTCAGAGGATTGCAGTCTGAGCAAGAAGTATTACTGACTCATGGAGACTCTATTGACCGAGTTGCTAGTAACTTGAAAGTCATTGCTAAGTCAGGCGACCTTGTTGCAGGAATCGAGGATGAAGTCCACAAACTATATGGAGTCCAGTTTCACCCGGAAGTGGATCTCACAGAAAATGTTGTAAATTGTGCTCTTCGGTTTTACAACAGTTCCACTGTAATATCTGGCAGGAAAGACCAGCCAGCTGTTAAGAAACAAGTCACAAAAACATTGAATGTCACAACCAACCCCGAGGAAAAGAGAAAAATTATTGGAGACACGTTCATAAAGGTTGCTAATGAAGTTGTCAGTCAGCTGAACCTTACAGAGCAAAACACCTTTCTGGCGCAAGGAACCCTACGACCAGATCTCATCGAAAGTGCTTCATCGTTAGCAAGCAAAAAAGCCGATGCTATAAAAACACACCACAATGACACGGAATTAGTGCGAAACTTACGCGCGAAGGGACGAGTCATTGAACCTTTGTCCGAGTTCCACAAAGATGAGGTCAGAGCGCTCGGAAGAGATCTCGGTTTACCAGCAGACGTTGTACAAAGACATCCGTTTCCCGGTCCTGGACTGGCCATTCGTATCATTTGTGGCGATGAACCGTATCAAGGAAATGACTTTGCCGAAACAAATATTATTCTTGGACAAATCGTTGACTTTGCAACGGCCAAGAAAAAGCCGCACTCGCTCTTCAGTCGCGTGAAAGTGAGTACAACAGAAGAAGATCGGGAAACGCTTCTTGCGATCACATCAAAATATAAAATCGGAGCCACTCTCCTGCCAATCAAATCAGTCGGTGTCCAAGGAGATGGGCGGACGTACAGCTACGTAGTGGCGCTTTCCAGCAATGATTCTCCGGACTGGTCCTCTCTCTTGTTCCTTGCTAAACTCATCCCGAAAGTCTGTCACAATATAAATCGAGTTTGTTACACGTTTGGTAAAAGGATAAAATTTCAGATCCAAGATATCACACCAACGTTTTTGTCCATTGGAGTAATCAGCACAGCAAGACAAGCAGATCATGTGGCACACTCTGTTCTACGAAATCACGGTCTACTGTCACGTATCAGCCAGATGCCTATTGTTTTAATACCTGTTCACTTCGATCGCGATCCAATCGACCACATTCCATCTTGTCAGCGGTCCGTGGTGATCAGAACTTTTATAACAAACGACTTCATGACTGGTGTTCCTGCGACACCGGGAAAACACATTCCTCTCGAGGTTTTGAGTGAAATGGTGGAAAATTTGAAGGATGTGCAAGGCATCTCTCGAGTTCTGTTCGACTTGACGGCTAAACCCCCAGGAACAACTGAGTGGGAATAACTGGAGAGAAATGACGGCGATAAAGGGTGTGGCGCAGTAACACGTGGTCTTTCAGTGTACTGAGAGCGTTCCGAATAAGACGATTGCAAAGCAAGGTCCTAATTAATTGAACTTCTAGTTCGTGTGCGGCCAAGATGGAGCCTAAGGCAACTAAATTCTGAACTAGCTAGTCTTTCCGTAGTCCAAATGGTATAAATTCCTCTCTTTGAGTTGGCCTCAGTTTGACTATTTTTGTCTGCGAGCATTTACAACTTATCAATAGATTTGATAACGAATGAAGCAAAGTTTTTGATTGATTATAATTCGTTGTGGACCAAACTGGTCCAACTTCTGTGTCAATTTGCGATTAATATATTTCTGCTCTCTTATTGGTCATCTCGCAACCAGTAAATCTCGTCCCAAGTCGATTCGTCCTTTAATTATGGCAGTTATTGCCTCTGAAACACCGTGGTAGCGAAATAAGTACTAACCCCCCATATCAGGGAAACGTCCAAATTCATTGAAGTAATTTATTGATAATTTATATTTAATGTTTCTTTAATTTGTTAACTTCTGAACAATAATGTTTCCATAACATCTAACCGCTTCGTTTATTTCATAACCAAATGAAAATGTTTCCTCTTTACTCTTAGAGAGATTCATTTTATCTACATTTTAATGTTTCCATTTTTTTGCTGTTCAAAATAATCTTTTCAATGATCGTATGAACCTCTCCACAAAGGATAACGTTTTATGATTTTTTGGTCACGGATGACATAACGCCATCTTTCGGGTGGTGACTGCTTCAGAGCTTTGAGCTTAAGAAAACCTTTTGAGGAACAAAGTGCTCTCGTGAGAAATACAATAGTTTGTTGTGTTCCATTGCATTGAGTCACAGTCAAGATCCAAAAATGAAAATTACAATGTAATAAGAAATTTTGGGTTGAAGTTACTGTCCATAAATTAACAGTAACGAGAAGAGGGGATATATTTCTGTAAATATTTCTTTGAAAAGTAATAATTAAAAATACACTTTTCATTATATTATGATCTCGTCTTCTTTTTTTTTTCGCATCATTATCAGTCTCAAATAAACTCCATTTTGCTTC

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P49915	GMP synthase [glutamine-hydrolyzing] OS=Homo sapiens OX=9606 GN=GMPS PE=1 SV=1
Q4V7C6	GMP synthase [glutamine-hydrolyzing] OS=Rattus norvegicus OX=10116 GN=Gmps PE=1 SV=1
Q3THK7	GMP synthase [glutamine-hydrolyzing] OS=Mus musculus OX=10090 GN=Gmps PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003265 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00117 all species →	GATase	Glutamine amidotransferase class-I	Domain	Interproscan
PF00958 all species →	GMP_synt_C	GMP synthase C terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR025777 all species →	Domain	GMP synthetase ATP pyrophosphatase domain	Interproscan
IPR017926 all species →	Domain	Glutamine amidotransferase	Interproscan
IPR004739 all species →	Domain	GMP synthase, glutamine amidotransferase	Interproscan
IPR014729 all species →	Homologous_superfamily	Rossmann-like alpha/beta/alpha sandwich fold	Interproscan
IPR029062 all species →	Homologous_superfamily	Class I glutamine amidotransferase-like	Interproscan
IPR001674 all species →	Domain	GMP synthase, C-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11922 all species →	GMP SYNTHASE-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003921 all species →	Molecular Function	GMP synthase activity	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0003922 all species →	Molecular Function	GMP synthase (glutamine-hydrolyzing) activity	Interproscan
GO:0006177 all species →	Biological Process	GMP biosynthetic process	Interproscan
GO:0005829 all species →	Cellular Component	cytosol	Interproscan
GO:0006164 all species →	Biological Process	purine nucleotide biosynthetic process	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for asel_s0098.g23.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.