Gene detail

Detailed information of asel_s0111.g11.t1 in Acropora selago

Genomic Location: sc0000111_pilon:119216...130548
NR annotation: XP_029179441.2, rap guanine nucleotide exchange factor 4-like isoform X2 [Acropora millepora]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

asel_s0111.g11.t1

CTCGCGCAAGTTTTCAAAGTAGTGTCACTAGCGTCACAACTGAACAATTTTCAATTGTAAATGTTGGTGACCTCTTGAGTGACAAAGTTGGTTGAGCAAACATTACAAGACAGCAGATGCGCTTTTAGATCTCTTGAATGGGACGTCAGTATTCACGTCATGGAAGCTGATTGGATCTCTTGTCTCGAAAAAAGATCTGCAGACAGAACTGAGAAGGATCTGGACATAATTTACTCTAAGCTAAAGGTACTGGAAGGTTTTGAGCGATTTCATTCGTCAGTTCTTCTGAAAATTTGCCAATATGGCTATTACCAAGACTTGGAAGAAGGAATTACACTGTTTCGCCGGGGAGACATTGGATGCTACTGGTATGCAGTGTTATCTGGAACAGTAGATGTGAATCTTTCTGAAAATGGGAAATTCGAGGATACTGAAACCATCTGCAGCCTTGGACCAGGAAAAGTGTTTGGTGAGTCGGTGCTGGATGACTCACCGAGACATGCAACAGTTGTCACAAGTGAATTCTGTGAACTTTTGATTGTCAAGAAAAGAGATTTTCGTGAAATTTGGGAGCGGGAGAAAGAGCATCTTGAACATCTGATATCAAGTCCTTCAGTTGAAACAAGTACATCATATTTTGAGATACAAGGAAAAAACGATAAGCTGTTTGAAGGAAATAATTCACAAGAACACCTTTCTGTGATAGTGTGTCATGACGAGGCTTTCTTGGCGGCCGGAAGTGTTCTGCACTACAGGATGACGCTCAGCATGTCACCTAAACTCATCTGTGACCGGATCATTGAAAACCGAACCGAGGAAAGATGCTTTATTGGCTCCCAAGCAATTGATTGGTTGGCAAAAGTATCTCCTCTCGTTGACGGTCGGTTCCATGCCCTTAATATGCTACAGGCTTTACTTGAAGAAGATATCATAATCAATGTTAGTGGTTCCGAATGTGAGTTCAAAGACACAGACAATTTATATAGGTTTTCTATTAACGAGTGGCCTGGAAATGAGGTATATGCTGAAGAGGACCTCGACGACGCTCTGCTCATGCTCACTAGATCAGGCCCCGACGCTCAGCTAAGACTGGCTCTAAGAAAAAGATCCTGCAATAGAACTCCCGATGACTTAGCTTTGATTTACGAGGAACTCCTTCACATCAAAGCCCTGCATCATTTGTCAACCACGGTTAAAAAAGAACTTGCAGCAGTTGTTGTCTTTGAATCGTGTGATAACATGGGAACTGTACTTTTTAAGGAAGGAGAAGAAGGAAACTCGTGGTATATCATCATAAAGGGCATTGTCAACGTTATTGTCCATGGAAAGGGTGTGGTGTGTCAGCTTAATGAGGGAGATGATTTTGGAAAGCTAGCTTTGGTCAACAATGCTTTACGGACAGCCACAATAGAAACCGCCAAGGATTCCTGTCATTTCCTGAAAATCGGAAAAAGTGACTTCAACAGAATTTTTCAGGATGTGGAAACCAACAAAGTTCACCTGAAGGAACACAGTCAAGATGTACTTGTCTTAGAGAAGATGAATAGTCGAATTCTTTTTGGGCAAAGTGGATGTCATGCGTCCTCGCAGATGTACTCGGTAATGGCTGGCACTCCTTCAAAAATGGTGGAATATCTTTTGGAAACAAGAATTGATTCTAAATGTTCCCTTGACGATCACTTCTTGAACGATTTCTTGGTGGCTTTTCCGATATTTATGACAACAGAATCGTTGTGCTATGCATTGTTTGCCAACTACAGTAGAACGACGTTTTTTGACTGTGGGCCAGAGTTTAGTAGTTGCACGATAAGAGAGCACTCGGACGCCATTAAGAAAAGAGTTGTTCAAGTGACGCAACGTTGGTGCACTTTAGCGGGAAATCTGTTTCTGGAGGATAAAAGCATTTGCATTTTCATTGAGGACTTACTACAATCTTTGGAGAAAGACAAACTGGACGATGAATACAATATACTGAAAACAGAAATGTCCTTGCTTCACGAAAGATTTTCACAACAGAAAAACGTGGATGGCTCAACGGGCCCATTACGGGTTTGCTCatattagggagcttaagcaaccacgacgacgacggcaacagaaaccccacaaatttgcatatttgacaatgaaaaacagtaattttg

Protein

Uniprot

Uniprot term	Description
Q8WZA2	Rap guanine nucleotide exchange factor 4 OS=Homo sapiens OX=9606 GN=RAPGEF4 PE=1 SV=1
Q9EQZ6	Rap guanine nucleotide exchange factor 4 OS=Mus musculus OX=10090 GN=Rapgef4 PE=1 SV=1
O95398	Rap guanine nucleotide exchange factor 3 OS=Homo sapiens OX=9606 GN=RAPGEF3 PE=1 SV=6

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00027	cNMP_binding	Cyclic nucleotide-binding domain	Domain	Interproscan
PF00610	DEP	Domain found in Dishevelled, Egl-10, and Pleckstrin (DEP)	Domain	Interproscan
PF00618	RasGEF_N	RasGEF N-terminal motif	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036388	Homologous_superfamily	Winged helix-like DNA-binding domain superfamily	Interproscan
IPR023578	Homologous_superfamily	Ras guanine nucleotide exchange factor domain superfamily	Interproscan
IPR000651	Domain	Ras-like guanine nucleotide exchange factor, N-terminal	Interproscan
IPR000595	Domain	Cyclic nucleotide-binding domain	Interproscan
IPR014710	Homologous_superfamily	RmlC-like jelly roll fold	Interproscan
IPR000591	Domain	DEP domain	Interproscan
IPR043533	Family	Cyclic nucleotide-binding domain-containing protein 1/2	Interproscan
IPR036390	Homologous_superfamily	Winged helix DNA-binding domain superfamily	Interproscan
IPR018490	Homologous_superfamily	Cyclic nucleotide-binding domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23011	UNCHARACTERIZED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0035556	Biological Process	intracellular signal transduction	Interproscan