Gene detail

Detailed information of asel_s0111.g29.t1 in Acropora selago

Genomic Location: sc0000111_pilon:275828...282175
NR annotation: XP_029179449.1, zinc finger protein 2 homolog [Acropora millepora]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

asel_s0111.g29.t1

AGTCTTGCGTTTCTACATGCTCTGGAAAGATTGAAGTTTGGTAATGAGACGTCTCATTTAAGTGCAGTGAACGCCGATTGGAAGACTCCATCGGAGAAGCTACGATCCTGTCGCTGTACAGTGAACAAAATAGCAGTGAGAATGGGAGTCGGAACGCGTTCGTCAGCTAAAAAAACCGAAGAGGAGGAGGAGATAAAGGCAAAAGAAGTGGCTATTAAAGTTGACGCTGAAACTCAAACCGACCCTGAAATAACGGGAGTAGACGCGGATGATTTCGAAGAAGATGATGGCGAAGAATCTGGCTCAGATAGCAGCGATGATGAAGATGATGAATTAGAAGCTGGGGAAGACGGACTAATTAAAAGTGTCGACAAAGGAACTTCATCCAAGCCAGTGCGCCGCAAAATTATCGAGCTTAAGTATTACTTCGGAGAAGATTTGCCCGACGCGGAGCTCAATAAACTTGCACAAGCAGATGTTATTGTTCCTCCTGGACTAGAAGTCAAGGAATCAAGCATTCCAAAGGCTGGCAGAGGAGTTTTTGCTAAGTGTGTTATTCCAAAGCATGACTTCTTTGGACCATTTGTGGGTAAAAAGATTCCAGCAGAAGAGGCAAAGAAGTACAAAGACTCTTTGTACATGTGGGAGCAAAGAAGTATTTTTGTGCCTCAGCCTGTTGGTCCACGAGCTGCAATTCCTAAGATAAAAGTCACTGAGGAATATGCCCGCCAACAGAATGAGAAACTAAAGAAGTTCAAGTGTGATGAATGTGGCAAGGCATTCATTCGCAACTACACCTTACAATGCCACAAGTTGATCCATACTGGTGTGAAAGAGCACAAGTGCACAGAGTGTGGCAAAGAGTTCACTCTCTTGAAGCATTTGCAACGACACCAGCTTGTACACACTGGAGAGAAGCCTTACAAGTGTCACCTCTGTGGCCGTGCCTTCTCTCAGCAAGGCAGCCTTCAAGCTCACAGCCGCACCCACACTGGAGTTAAACCATATTCCTGCAAGATATGTGGAAGGGCCTTTGCACTCCAGTCTCCTCTTCTTTCTCACATGAGGACACACAGCAAAGAGAAGACATTCAAATGTGATATCTGCGACAAGGCGTTTACACACAGAAATACATTGTCCAGACATCAGCTCATTCACACTGGTGTTCGTCCATTTAAGTGTGATGTCTGTGGAAAAACATTCACACAGACCAATGATTTAAAGCGCCACAGTCGCATTCACACTGGTGTGCGTCCTTACAAGTGTCACATCTGTGGTAAAGCCTTTACAGTCGAGTTCACTTTGGTTTGCCACATCCGAACACACACAGGTGTTCGTCCTTACAAGTGTGATCATTGTGAAAAGACATTCACTCAGCCAGGTGCCCGTCTGAAACATGTGAGGAACTACCACCCTGACAAGCCACTTCCTAAAAAGGAAACTTTTAAAGCCACATCTGCAGAATCTTTTGCAACTGTCAGTTCGCAAAATACAGTGATTTCTACTACAACCTGTGCAAACAACTCCCAAGCATCCAGTAGTTCTGCTAATACTGATAACTCAGCCACTATTCCTGATGATGAGATAACAGAGAATTCCAACCCTGTCGTCAGTGATACTGAAATGGTTCAATTACCTGATGACACTGTAGTGTTGTCTGTCTCCTAAATCAATGATAAAGGACTAATTTCTGCACAAGACAGCTTTGTAGAATCAAGGATGCCACCTGCATGTTTAGACTACAATAATAATTATTATTGTTTATCTATGTTCTCTGTGGGATGAATTAAATGCTGATTTAATGATGTATGTATGATGTGGTGTAAAATGGCCTTCACTCTCAAAAGGATTAGAACAAAGGGAAGGAATCGATATTTCACTTAATAGTTAGGTGATACATTTAAGATTTCAGCACAGGAAAATAACATATCTGCTAATTTAACTTGAATAACTGTTTTTTGAATGTTAAACACAACAATGTGAACAATGAAGGAAAGGGGAGACTTTTCAGTTTTAGTCTATTCAATTTAATGAAGACAAAGGTTTCATAATGAATATCATGATTATGAGAATGTGTTTGACCACATATACCTATAATAAATATAATTTGATGATGCAAGTTAATGTTTGTAATGATATTGAGTCTTATGCTTTGGTTTAGAATGGACAATAGGCAGTGTTTTCTGGATTTGTGAAAATGTCATGATGTGTGTTTTGTATGAGGTTAATAAAACAGGAAGAATCTT

Protein

Gene family

Gene family	Subfamily
Transcription Factors Family	zf-C2H2

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00096	zf-C2H2	Zinc finger, C2H2 type	Domain	Interproscan
PF21549	PRDM2_PR	PR domain zinc finger protein 2, PR domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR013087	Domain	Zinc finger C2H2-type	Interproscan
IPR046341	Homologous_superfamily	SET domain superfamily	Interproscan
IPR036236	Homologous_superfamily	Zinc finger C2H2 superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR14003	TRANSCRIPTIONAL REPRESSOR PROTEIN YY	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000790	Cellular Component	chromatin	Interproscan
GO:0000978	Molecular Function	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Interproscan
GO:0000981	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0005667	Cellular Component	transcription regulator complex	Interproscan
GO:0006357	Biological Process	regulation of transcription by RNA polymerase II	Interproscan
GO:0031519	Cellular Component	PcG protein complex	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K09228	KRAB; KRAB domain-containing zinc finger protein	-	Transcription factors	ko03000	deepkoala