Gene detail

Detailed information of asel_s0112.g27.t2 in Acropora selago

Genomic Location: sc0000112_pilon:334305...344585
NR annotation: XP_044183937.1, LOW QUALITY PROTEIN: phospholipid-transporting ATPase ABCA3-like [Acropora millepora]
Species Acropora selago · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

asel_s0112.g27.t2

ATGTACCAACTGCTCAAGTGGAGAGCAATGTAGGAGCCGAATTATCATTCATATTGCCAAGTGAAGCTACAGGGAAATTTGAAGATCTTTTCATGGACTTAGAAACCCGTCGACAAGAGCTTGGAATCGCAAGCTACGGTGCTTCCGTAACCACAATGGAGGAAGTGTTTCTTAAAGTTGGGAAGGAAATGGATAGCTCACTGAGTGATAAACTGCAAAAACAAAACGAAGAAGAAATGCCAGCATTGGACGCATCAGGATCCAAGAATGGACACGTTGGAAAGATAACCGAGCGATCCTCAGTTCTTGCTAAAATGGGTGCTTTTGGATCCGTCTCACCTGGTAGCTATGGCACCTTCGGGGATTACAACAGCTATGCACACTCATCCGGTTTCCGCCTGTTTCGTCAACGTTGGTATGCAATGTTTCTCAAGCGTTTTCTTCACTCCAAGCGTCACAAAGCAGCACTTCTTTCGCAGCTTCTTCTTCCTTTGGTCTACACACTCTTAGCTCTTATCAGTGCAAAAACATTCCCTCAGCCTTCTGACTCACCTCCTCTAACTTTGTCCACCGATCCCTATGAGAAGAACTTTGTCCCATGGTCTGCAGAAAGCGAAACAGGTAGATTTGCAGAGAAGTACTGGACGCAGTGGCAGAATAGCGAAACTAAACCAGTTAATGTGTCAGGAAATATGACGCATTATTTGATGAACAAAGCCAAAGACGTTGGACTGGGTGATTTCAACAGAAAAGACTTGATTGCTGCTACATTTACTAAGAACAACGGAAAAGTGAATTTGACCGCCTGGTTTAATAACCAAGCTTACCATTCTATTGCTGTGTCGCTTGCGGCTGCAGATCAAGGCATTTTGCGGAGTCAAGTAGGTACTGATTACAGCATAACAACAGTGAATCATCCCCTGCCAAGAACTGCTCTTGAAAAAGTCAACGACTTACAACGAAATGGGCTTGGGTTCAACATCTCCTTCAACCTGCTGTTTGGTATGGCCTTCTTGGCCTCGAGCTTTGTGGTGTTTTTGGTGCAAGAAAGAACGAACAAAGCAAAGCACGTGCAGTTTGTCAGCGGTGTAGACCCATTTAGCTACTGGGACTCAGCTTTCACGTGGGACTTGATTAACTATCTCATTCCAGCCCTGTCAATTTTGGTCCTTGTAGCAGCCTTCGATATTCCGGCTTTTGCTGGTCCTCGTCTTGGTTACTTGTTTCTTCTGTTGATGTTGTATGGCTGGGCCGTCATCCCCCTTATGTACCTCTTCTCCTTTGTCTTCCGCACCGCGTCAACAGCGTTCGTTGTCTTAACAATGTTTAACATTATCACTGGATTGGCAACATTGCTGAGTGTCTTCATTCTAAGTATCCCAGGACTTGACCTCCTGGACACAGCCGACGTCCTTAAATGGGTCTTTCTTGTTTTACCCAACTACTGTCTCGGTCAGGGAATAGGCGATATGTTCAACAACTATAACGCTCTGGAGTTTTTTAATAAGGCAGTCGATATGTGTGTCCATTCCAAAATACCATATATTCCTCACACCAAGCAAGACTGTGAGAATATGGAAGAATGTGAAGCGCTTTGTACTCGGCTTGCTATCATGGTAAACGGACAGTTCAGGTGTCTGGGAAGTCCGCAACATCTCAAAAACAAGTTTGGTGAGGGCTACACACTTCTAGCTCGCTTATCAAGCACAAATTCTGATATCGGACCGTTAAAGCAGTTCATAGAGGGCTCATTTCCCGGTAGCGTATTGAAAGACGAGCATCAAGGCATGCTCCACTACCACATACGCGACACCAGTGTAACGTGGGCTCAGCTGTTTGGAACAATCGAGAAAGTCAAGTTGAAATTTGACATCGAGGATTATTCAGTTAGCCAGACCACATTAGAACAAGTGTTTCTGAACTTCGCTCGAGGACAGCGAACAGAAGACGAATGATTCTGCAGCCCTATTGTTAAATCTGCTAATATCCGGACTTGCAAGAGGATGAGATGCATTTCATTTATGTTTTGCATCTCGAATTGTCCCTTTACCTTTCTCCTCAATTTCAACATTATACTCCTTGTGTCGCAAGGTGTTTTCCTAAAACTCTTACTTCTCGAGTTAAGATAAACCGTCAAGATAACTCTAATCCAACTCTATGCCCTGAGATTAATTCTGATCTTAATTTTAGGTAAATATGATAGGTGCTGAAACTTTTCAAGGCACTTCGTAATAGAAATCAGAAGTGTATTTTATCTAATAACCTTCATTTCATGACACAAGTGGTCTTCGTATGCAATTTTAGGTATTTTTAATGAAATCTCTAAGGTACACCTCTTTTGTAAAACAACTTCAAGTGGTTATAACGAGGTTAGCGTAAATAAATAGAGTTTGTTAGT

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
A0A0G2K1Q8	Phospholipid-transporting ATPase ABCA3 OS=Rattus norvegicus OX=10116 GN=Abca3 PE=1 SV=1
Q8R420	Phospholipid-transporting ATPase ABCA3 OS=Mus musculus OX=10090 GN=Abca3 PE=1 SV=3
Q99758	Phospholipid-transporting ATPase ABCA3 OS=Homo sapiens OX=9606 GN=ABCA3 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000297 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF12698 all species →	ABC2_membrane_3	ABC-2 family transporter protein	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR026082 all species →	Family	ABC transporter A	Interproscan
IPR013525 all species →	Domain	ABC-2 type transporter, transmembrane domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR19229 all species →	ATP-BINDING CASSETTE TRANSPORTER SUBFAMILY A ABCA	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005319 all species →	Molecular Function	lipid transporter activity	Interproscan
GO:0006869 all species →	Biological Process	lipid transport	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0042626 all species →	Molecular Function	ATPase-coupled transmembrane transporter activity	Interproscan
GO:0043231 all species →	Cellular Component	intracellular membrane-bounded organelle	Interproscan
GO:0055085 all species →	Biological Process	transmembrane transport	Interproscan
GO:0140359 all species →	Molecular Function	ABC-type transporter activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for asel_s0112.g27.t2.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.