Gene detail

Detailed information of asel_s0119.g5.t2 in Acropora selago

Genomic Location: sc0000119_pilon:101640...137365
NR annotation: XP_029211540.1, ras-specific guanine nucleotide-releasing factor 2-like isoform X1 [Acropora millepora]
Species Acropora selago · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

asel_s0119.g5.t2

ATGTTGTTGCCCATGTTAAGCATTTATCAGGAATATGTGAGAAATCATCATTATTCTCTTCAGACGTTAGCTGAATGCAAACAGCGACCCGCTTTCCATCGCCTCTTGAAATTGTACGAGGAAAAACCAGCTTGCAGTGGAAGGACTCTTGAATACTTTCTAACAGCTCCAATGCACAGGGTCCCCGCATACATTATAACTTTGCATGATCTTCTAGCCCTTACTCCTCATAATCACGTGGAAAGGAACACGTTGGAGTATGCGCAGAGCGTTCTTGAAGAACTTTCAACGGTGATGCATGACGAGGTCAGTGAAACTGAGAATATTCGCAAAAATCTATCCATTGAGCGGCAAATTGTGGAGGGTTGCGACATGCTTTTGGATGTTAATCAGATATTTATCCGTCAAGGGAATTTAATTCAGATAACAGAGAGCCGTAAATTCAAGACCTTTGGTGGTCTGTCGCTGAAGCCTTCTGAAGTCAGGAAAGAGACCGTTCGCCAGTGTTTCCTGTTTTCAGGTTACCTTCTTCTAACTTCAAGATCATCCAGCGGTCGCTTGCATCTCTCCAAGAATGGTTCAAACATTTCCCTGGCTGAAGCGACACTTGTTGACGATTGTTTTCAAGTGGAGGACGCCGAAAGCATTTTCTATGGCGTGCGAGGAAATCAAGAGCTCGACTTGGATGAGTTGACATTCAAACTGATTGTGCGATCACGTGACAAACCTGATTCAGGATCACCGTACACCGTGACTTTAATGGCGCCTTCACCACAGGAAAAAGCCGAATGGACTTCAGATATCAGTCAGTGCATTGAGAATCTCTCCATGATGGCAGAAGACGATACAGTTTCTGTGTCATCGAGACTAAGTTTGGCGAGTGTCAGATCCGACCCAAAGTTGTTTACTGATGATACAGATATTAAATACTGCAAAGCCTTAAACTGCTGCAAGCTCCCTAAGATCCGTCACGCCAGCCTGGAGCGACTACTTGAGCGTCTGCTGGATATTCGCTTTCTCAGTGTTGATTTTCTCAACGCGTTTCTTATCACCTACCGTGTGTTTACCTCAGCTTCAGTACTTCTGGACACACTGTTGGAGTTTTACTATTCCAACAATGCTAAGCAGGCGGATTCCCTTTGCACAGACCTGTTTCCGCCAGTCAACCGTAAAGTCCGATCAGAATCGCTTCCCACATCGTCACTGAGTCCTTTGCCAGACCGGAAGAAAGGTGGCAGTAAGTTCTTTGGTGAGCAGAAGAATTCTTCACCATCTCAGTCCATATCCATCACAGTGTCTGATGTCAAGATGCCGTCAGATAACAACCAAGCGGAAGCTTGTACGCCTAGTGAAACTGCTGGGATCACTCCTGACCGTCTGTGCCCCAGTAACTACCACTCCTATAGGAGGCATTCATCACCCTCGGCTTTGGGCGAGACAGCAGCTTTTGACTTTCCAGAGTCAACTACTGATCAACCACAGTCACCAGGAGAAGATTCACCAGGCCCCATTCGTCACGAGAGCCTTCGAAATCACAGTTCGCCTTTTCTAGCACGTGGCAACATTCGAACCCGAGCCCAGAGCAGCTCGTCAGATTTCGTATCAACAGGAGTCACACACAATAAGCTTAACATGGAAACAAACTCCAGGTTGTCGACGTCGCCAGTCGAGGATGTCTTCTGTGACTTGAAATTTGAACTGCAAGCTCCTCCCAAACAACGCCCAAATAGACGCTCCCGTGCTCTTACCCCATCAGGATCCGTCTTGTCCAGCGAAAATCCATCTTCTGGTAGTTCCTCAGTGCATTCCACTGAAGAGAAAACAAAACGGACAACCACAAATACGACTGAAAAGGAACTGTCGTTGCAAGATTGCGAGAAAGTTAGTCAAAAGACCAAATCCCATCGCCGGAGATCATCTCCCAGCGGATGTCGTGACCGTGGTTCAACGGAGACTCCTCCAGTTAGTTGCTTAGGAATCGTGGCTGATGCTGGCTCCCAAACCCCTGAAATATCACGCGAAAAACAATCGAACAAAAGGTCAGGCTCCCCGTGCAAACTTTACAAGATTGTGAAGGATGCAGAAGAGAGGGTGATGAGCTTGAAGTCTCAGCGACGATCAAGTCCTCCGATGACGACCTCTTATGCGTCGCCCAAATCACCTGTGTCCCCCATCAGCTCACCTAGATCTCCTCTGTCGCCTTCTGCTAATACTGTTAGCGCGGGAGTGGTTGTGACCTCATCGATCCCAGCTCGGCGCCGATCCAGTATATCATCTGCAGCCGCGGCATTTGCTGCCGCAACTGCAGGCGCGTCTCCGTCATACGCGGCAACTTCGCCCACTAGATTTCGTTTTGGTCAAAATATCCGTGAATTACTTTCCTCAAACAATCACATGGCCACAATGAGAGTCCTTACCGTTCTTCGACACTGGGTCACAAAACACCCCGAGGACTTTGAGGCTGATCACGCGTTGAAAGAACAGTTAGTGTCGTCAATGAATTACATTTTAAACAGCGATGGTTCCACCAATCTGGAGCAAAAGTTTGCGGCCGCAATTATAAAGACACTTGAGCGAAAACACGAGGAACTAAAAGCGGCTCTTAGCTTTGAGTTAAAGCTGGATCCTGTGAAGACCCCAAAAACCGTGGAGTTGGCAACATTTGATAAGATATCTGCTACACAAATTGCTGAACAACTCACATTCTTGGAGCACTTAATTTTCTCTAAGATTCCTGCACATGAATTTCTCAATCTATCTTGGATGAAATCAGATAAAAATGTACGAGCGCCTAATATTCTACGCGTCACCAAGCGATTCAATGAAACAAGTTCGCTCGTGGCGTCTGAGATCCTTAGGCGCCAGTCTCCCTCAGCTCGCGCGACGGTAATTGAAAAGTGGGCAACTGTTGGTGAAGTTTGTCGGAATCTGCACAATTTTAACTCAGTGTTAGAAATTAGTTCGGCCTTTATGAGCAGTTCCATCTTCCGACTCAAGAAGACGTGGGAAAAGGTGTCAAAACAGACACGGACATTAATTGATCGACTTCAGAAGTTGGTCAGCTCTGATGGTCGCTTTAAAAACATGAGAGAGGCTCTCAGATGTGCGGATCCTCCTTGTGTGCCGTATCTTGGTTTCTACTTGACAGATCTAGCCTTTATTGAAGATGGAACTCCAAACAGTAATGAAAACGGCCTTATTAATTTCTCGAAGATGAGAATGATTGCCCAAGTCATTCAGGAAATCAAGCATTATCAGCAAAATGTGTACACACTGGAACACGATAAAAGGATTATACGGTATTTGACTTCCAAAGCGAATCTCATGGATGAAGACATGCTGTATCGTACCTCGCTAACGCTGGAACCCAGAAAACGAGCATCATCCAAATTGAAGCAGCCAGTCGACGCGACCTAG

Transcript

asel_s0119.g5.t2

AGTAATCCAAATTTTACTTTTCGGTTTTGATCCAAGGTTAAATCCTAATTAACAATGTTTCTGGGAAGATGGAATTTATTGTCATAGAATTCTTAACGATGCTTTTCTCGTCAACCGATGAAGATTGCCTTTGATCGAATGCAACAACTGGCTCATCAACGAAGTTCAGCTGTGGGTAACATCACATCATCTGATGCTCATGAATTTTCTGCAAGCCTAGCTTGATCATCATGCCCGCTCCTGTGCGAATTAGTGAAGAACAACTCAAACACCTGGTTTCGTTGGCAAAACACGACTTCTCCATAAGCGGACGTGTTTACATCAAAAACCATGAAAACTCTGGCAAGTGGGTGCAGCGGTGGTGTGCCTTATACCAAAATTTTATGTTTTATTTTGAAAATGAAGATTCTACCAAACTTTCCGGAGCTATTTACTTGGAGCATGTGGTATGTGAAAGATTGTGCTTGACTAACCTAAAGGACAGCGAAAACCAGAATTGCTTCTCTATCAGCACACCAACAGTAGATGGACAGCAACAGTTTATTCTGAGAACAAATACAGATGATGAATGTGTGGCATGGATTGAGGCTATTTCAAACTGCAGTTTTGCTGAGCTGCAATCAGAGAAGGAAGAGTTGAGAAAGAAGTACATCCATGTTATGCAGATACTGGAAAGTGAGAAGACTGCCAAATGGCAATTACTTCAACAGTGTGAGGAGCAAGGGCAGTTGGTGTCTAGCCTCAAAGCTGAGGTTGCAGCTCTTCGAAAGCAAAAGACAGCTGAGGCAAGAGAAGAAGAGAGTGAGGAAATAAGAAACATAAAAAAGCGAAACAATTCTCTTTTTGCATCAAATCTTCCTGAAAGGTCTTCATACCCGCTTGGAAAGCTGGCCGACACTGGTGCTCGGTGACTTGTTTGACATGTTGTTGCCCATGTTAAGCATTTATCAGGAATATGTGAGAAATCATCATTATTCTCTTCAGACGTTAGCTGAATGCAAACAGCGACCCGCTTTCCATCGCCTCTTGAAATTGTACGAGGAAAAACCAGCTTGCAGTGGAAGGACTCTTGAATACTTTCTAACAGCTCCAATGCACAGGGTCCCCGCATACATTATAACTTTGCATGATCTTCTAGCCCTTACTCCTCATAATCACGTGGAAAGGAACACGTTGGAGTATGCGCAGAGCGTTCTTGAAGAACTTTCAACGGTGATGCATGACGAGGTCAGTGAAACTGAGAATATTCGCAAAAATCTATCCATTGAGCGGCAAATTGTGGAGGGTTGCGACATGCTTTTGGATGTTAATCAGATATTTATCCGTCAAGGGAATTTAATTCAGATAACAGAGAGCCGTAAATTCAAGACCTTTGGTGGTCTGTCGCTGAAGCCTTCTGAAGTCAGGAAAGAGACCGTTCGCCAGTGTTTCCTGTTTTCAGGTTACCTTCTTCTAACTTCAAGATCATCCAGCGGTCGCTTGCATCTCTCCAAGAATGGTTCAAACATTTCCCTGGCTGAAGCGACACTTGTTGACGATTGTTTTCAAGTGGAGGACGCCGAAAGCATTTTCTATGGCGTGCGAGGAAATCAAGAGCTCGACTTGGATGAGTTGACATTCAAACTGATTGTGCGATCACGTGACAAACCTGATTCAGGATCACCGTACACCGTGACTTTAATGGCGCCTTCACCACAGGAAAAAGCCGAATGGACTTCAGATATCAGTCAGTGCATTGAGAATCTCTCCATGATGGCAGAAGACGATACAGTTTCTGTGTCATCGAGACTAAGTTTGGCGAGTGTCAGATCCGACCCAAAGTTGTTTACTGATGATACAGATATTAAATACTGCAAAGCCTTAAACTGCTGCAAGCTCCCTAAGATCCGTCACGCCAGCCTGGAGCGACTACTTGAGCGTCTGCTGGATATTCGCTTTCTCAGTGTTGATTTTCTCAACGCGTTTCTTATCACCTACCGTGTGTTTACCTCAGCTTCAGTACTTCTGGACACACTGTTGGAGTTTTACTATTCCAACAATGCTAAGCAGGCGGATTCCCTTTGCACAGACCTGTTTCCGCCAGTCAACCGTAAAGTCCGATCAGAATCGCTTCCCACATCGTCACTGAGTCCTTTGCCAGACCGGAAGAAAGGTGGCAGTAAGTTCTTTGGTGAGCAGAAGAATTCTTCACCATCTCAGTCCATATCCATCACAGTGTCTGATGTCAAGATGCCGTCAGATAACAACCAAGCGGAAGCTTGTACGCCTAGTGAAACTGCTGGGATCACTCCTGACCGTCTGTGCCCCAGTAACTACCACTCCTATAGGAGGCATTCATCACCCTCGGCTTTGGGCGAGACAGCAGCTTTTGACTTTCCAGAGTCAACTACTGATCAACCACAGTCACCAGGAGAAGATTCACCAGGCCCCATTCGTCACGAGAGCCTTCGAAATCACAGTTCGCCTTTTCTAGCACGTGGCAACATTCGAACCCGAGCCCAGAGCAGCTCGTCAGATTTCGTATCAACAGGAGTCACACACAATAAGCTTAACATGGAAACAAACTCCAGGTTGTCGACGTCGCCAGTCGAGGATGTCTTCTGTGACTTGAAATTTGAACTGCAAGCTCCTCCCAAACAACGCCCAAATAGACGCTCCCGTGCTCTTACCCCATCAGGATCCGTCTTGTCCAGCGAAAATCCATCTTCTGGTAGTTCCTCAGTGCATTCCACTGAAGAGAAAACAAAACGGACAACCACAAATACGACTGAAAAGGAACTGTCGTTGCAAGATTGCGAGAAAGTTAGTCAAAAGACCAAATCCCATCGCCGGAGATCATCTCCCAGCGGATGTCGTGACCGTGGTTCAACGGAGACTCCTCCAGTTAGTTGCTTAGGAATCGTGGCTGATGCTGGCTCCCAAACCCCTGAAATATCACGCGAAAAACAATCGAACAAAAGGTCAGGCTCCCCGTGCAAACTTTACAAGATTGTGAAGGATGCAGAAGAGAGGGTGATGAGCTTGAAGTCTCAGCGACGATCAAGTCCTCCGATGACGACCTCTTATGCGTCGCCCAAATCACCTGTGTCCCCCATCAGCTCACCTAGATCTCCTCTGTCGCCTTCTGCTAATACTGTTAGCGCGGGAGTGGTTGTGACCTCATCGATCCCAGCTCGGCGCCGATCCAGTATATCATCTGCAGCCGCGGCATTTGCTGCCGCAACTGCAGGCGCGTCTCCGTCATACGCGGCAACTTCGCCCACTAGATTTCGTTTTGGTCAAAATATCCGTGAATTACTTTCCTCAAACAATCACATGGCCACAATGAGAGTCCTTACCGTTCTTCGACACTGGGTCACAAAACACCCCGAGGACTTTGAGGCTGATCACGCGTTGAAAGAACAGTTAGTGTCGTCAATGAATTACATTTTAAACAGCGATGGTTCCACCAATCTGGAGCAAAAGTTTGCGGCCGCAATTATAAAGACACTTGAGCGAAAACACGAGGAACTAAAAGCGGCTCTTAGCTTTGAGTTAAAGCTGGATCCTGTGAAGACCCCAAAAACCGTGGAGTTGGCAACATTTGATAAGATATCTGCTACACAAATTGCTGAACAACTCACATTCTTGGAGCACTTAATTTTCTCTAAGATTCCTGCACATGAATTTCTCAATCTATCTTGGATGAAATCAGATAAAAATGTACGAGCGCCTAATATTCTACGCGTCACCAAGCGATTCAATGAAACAAGTTCGCTCGTGGCGTCTGAGATCCTTAGGCGCCAGTCTCCCTCAGCTCGCGCGACGGTAATTGAAAAGTGGGCAACTGTTGGTGAAGTTTGTCGGAATCTGCACAATTTTAACTCAGTGTTAGAAATTAGTTCGGCCTTTATGAGCAGTTCCATCTTCCGACTCAAGAAGACGTGGGAAAAGGTGTCAAAACAGACACGGACATTAATTGATCGACTTCAGAAGTTGGTCAGCTCTGATGGTCGCTTTAAAAACATGAGAGAGGCTCTCAGATGTGCGGATCCTCCTTGTGTGCCGTATCTTGGTTTCTACTTGACAGATCTAGCCTTTATTGAAGATGGAACTCCAAACAGTAATGAAAACGGCCTTATTAATTTCTCGAAGATGAGAATGATTGCCCAAGTCATTCAGGAAATCAAGCATTATCAGCAAAATGTGTACACACTGGAACACGATAAAAGGATTATACGGTATTTGACTTCCAAAGCGAATCTCATGGATGAAGACATGCTGTATCGTACCTCGCTAACGCTGGAACCCAGAAAACGAGCATCATCCAAATTGAAGCAGCCAGTCGACGCGACCTAGTCGTCATAGGGACACCTTGAATGAAATGGACCCCCTATTGTTATGTAGATTAGGCATATGAATAACAATGGGGATGACGTCACTTGAAAGTCCCCAGGGAGACCTGTGCACTGAATATGGAGATCCCCTCTATTCAGTGCACAGCCTCCTCAGGACAGCTACGATGAAagtagtagtagtagtagtagtTATTTGGTGCAATCACCTCACCGGTGCTTAAATACTCTTTGTAAATGCCCCGTTTTTTGTCACATAACATGGATTGTACTGATGTATATATCTTTCCTTCCGTATTCTCATTCAGTACCGCTGCGGAATCATATTGTACATTTTGCCACTTTGTATTTAATTTTAAATTGCATTGTTGTACTTTCAAAAACTTAAATGAGAGAGATGTACGTAATGAATCAATTTGTAGATAAACGCCCCTGTGAAGAAAACAAATTTGTTGCTGAAAAATAGCTTCGTCAGTCTCTTTCAGAAGACGTCATTAAAACATTGGTAAAAGTGCTGTCGTTAATCTAAGCATTTTTTGTTGCTACATTCTcagtgccgtagcaagcggaggggccgggggggcccgtgcctccccagtttttctacctaaaaagtaaaaacagacctgtgttgaaaataaaatattgtcaagcaa

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P28818	Ras-specific guanine nucleotide-releasing factor 1 OS=Rattus norvegicus OX=10116 GN=Rasgrf1 PE=1 SV=1
Q13972	Ras-specific guanine nucleotide-releasing factor 1 OS=Homo sapiens OX=9606 GN=RASGRF1 PE=1 SV=2
O14827	Ras-specific guanine nucleotide-releasing factor 2 OS=Homo sapiens OX=9606 GN=RASGRF2 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001923 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00618 all species →	RasGEF_N	RasGEF N-terminal motif	Domain	Interproscan
PF00621 all species →	RhoGEF	RhoGEF domain	Domain	Interproscan
PF00617 all species →	RasGEF	RasGEF domain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000651 all species →	Domain	Ras-like guanine nucleotide exchange factor, N-terminal	Interproscan
IPR019804 all species →	Conserved_site	Ras guanine-nucleotide exchange factor, conserved site	Interproscan
IPR036964 all species →	Homologous_superfamily	Ras guanine-nucleotide exchange factor, catalytic domain superfamily	Interproscan
IPR001895 all species →	Domain	Ras guanine-nucleotide exchange factors catalytic domain	Interproscan
IPR001849 all species →	Domain	Pleckstrin homology domain	Interproscan
IPR000219 all species →	Domain	Dbl homology (DH) domain	Interproscan
IPR011993 all species →	Homologous_superfamily	PH-like domain superfamily	Interproscan
IPR008937 all species →	Family	Ras-like guanine nucleotide exchange factor	Interproscan
IPR035899 all species →	Homologous_superfamily	Dbl homology (DH) domain superfamily	Interproscan
IPR023578 all species →	Homologous_superfamily	Ras guanine nucleotide exchange factor domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23113 all species →	GUANINE NUCLEOTIDE EXCHANGE FACTOR	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005085 all species →	Molecular Function	guanyl-nucleotide exchange factor activity	Interproscan
GO:0007264 all species →	Biological Process	small GTPase-mediated signal transduction	Interproscan
GO:0005886 all species →	Cellular Component	plasma membrane	Interproscan
GO:0007265 all species →	Biological Process	Ras protein signal transduction	Interproscan
GO:0043547 all species →	Biological Process	positive regulation of GTPase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for asel_s0119.g5.t2.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.