Gene detail

Detailed information of asel_s0125.g43.t2 in Acropora selago

Genomic Location: sc0000125_pilon:730996...741330
NR annotation: XP_044181958.1, protein argonaute-2-like isoform X4 [Acropora millepora]
Species Acropora selago · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

asel_s0125.g43.t2

ATGCAAAGGGAATTGAACGAAATAGGTAATCGTGACAGAGAGAGAGGAATCAACGGGAAGGGTCGTCAGCAACCGCGGCCAGGAAGTAGCGAAAGTGACGCAGCTGCCATAGTTTCGGATCGTGAGGAAAAGCGAAACCTAGACGGAGAGGAAAGCGAAAGAACACTCGAGGGAACGGTTGGTCCAAGTCAAGGGACATATATCGGTACCAATCAAAGCCAGGAATCTGCTCTCACAGCACTTTCTACAGAACCGAAGTCTGAAGAGAAGACTGCGATCCCCTCAGCACGATCGCCAGATGAGAGACTAGGGCCGAGTGATTTTTCTCTCAGACCACAGACAGCTCCTTTTGTAAGACCATGTGGGAATACAGACAAATGTGAGGAGACGAGCAAATCCTGCGTTGCATCCACTACCTCTGAAGGTTCAGAAGATGGACAAGACATTACTAACTTGGCAGCAAAGCTGGGTTCCAACTTATCTATGCAAGGTACCATGGAAACACAGATGCCATCCAATCCCTTTACTCCAATTGGGCAAGCTTTATTCCCAATGGATGGTCAAGACAGACCCATTGAGGAAGGGTGTCATGTGAAGTCTGATTTAGACCAGAGTTTAAATGACCCCTCACAGTGGAAAGCCTCGCTGGTGAACATTGATGTGTCTGCAAAGGGATTTTACGAAAGTCAACCAGTTATAAAGTTTGTGTGTGAAACACTGGGTGTGCGGAATCTTGAAGACCGAAAAATTCAAATTGACAAAGAGAAGCTGAAGAAAGCTATAAGTGGTGTTCGTATAGAAACAACACATACGAGGCGGAAGTACACAGTTTGGGGAATGTCAAACCAATCTGCTGAAAAATTACAATTTGAAATTGAAGACGAGGCATCAAAGCTAACTACCAAAACAACTGTGGCCAGATACTTTCTTGACACATACGGGTTAGAGTTAAGATATCCTCATCTACCCTGCCTCCAAGTTGGCCAGGAAAAAGACTGTTTCCTTCCCATGGAGGTCTGTGCCATCATTCCTTGCCAAAAGAGGCACTTGTCTAAACAACAAATTGCAAATATGATCAGGAGTACGGCACGCCCTGCGCCAGAACAACAGGGGGAAATTCAACTTTTGCTTGGTCCCCAAGATAAAGCACTGACCCCACGTGATGGCTCTTGGGACATGCGCAATCAAGCCGTCGTTAAAAGCGCAAAGTTCGATATGTGGGCGTTGGTCTGTTTTGCTCGTTGCAATGAGGATCCACTAAGAAACTTTTGCCATCAAATGTCCATTGTGTCAAATCGTGAAGGAATGACTATAGTTGCACAGCCAACCTTAATTACATTTGGAAGAGGACCTGAAGAAGTTGAGCGATTGTTCTTTGACTGTTTGGAGCAATTTCCAGCACTTCAACTCATCATGGTTGTCCTTCCAGTTTTCGATAAAATACTCTACTCCGAAGTGAAACGCGTTGGCGATAGCGTGATCGGCATTCCTACACAGTGCGTTCAGATGAAACATGTGCAGCAGGCCAAACCTCAAGTGTGTGCTACCATCTCGCGTGATATCAATGCCAAACTTGGAGGAACCAATCATGTTCTTGACGATTCTGTTAAACCAGCGTTCAATGAACCTACTATCGTGTTTGGTGCCCATGTGACCCACCCCTCCCCAACAGAAAATGGCATTCCCTCCATTGCTGCGGTGGTGGCAAGTATGGATTATCATGCCTCGGAATATCACGCACGCGTCCGCGTGCAGAAGCACGAGAACGGTGGAGGTTCTCAGGTGATCATCACTGACCTCGCAGAGATTGTAAAAGAACTCCTCATCGAATTTATCAAAACTAATGGGTCTTGTAAGCCGTCTAAGATCTTGTTTTACCGTGATGGTGTCAGCGAGGGGCAGTTTGATCAAGTTCTTGTTCACGAAGTGCGCGCTGTGCAAGAAGCTTGTAGGAAACTTGAGAAGGACTATCGACCGCGCATCACGTTTGTCGTTGTACGGCAGAAACGACATCGCACTAGATTGTTTTCTGAAAACGGAAAAGAGGCTTCTGCTAAAGCACCTACTGCCCCACCAGAAACAACTGTGGACAGTGGGATTACTCGTCCATACGAATTCGATTTCTCAGTGTGCAGCCACGACAAAATTAAGGGAACAAGTCGACCAACTCATTATCGTGTCTTATATGACGACAATAATTTTACCGCAGCCAGCATGGAACAACTCACTTACGAGCTGTGCCAAGTTTATGCCAGGTGCACGCGGAGTGCGTCCATGCCAGCCCCTGCGCACTACGCACATTTGGCAGCTTCTCGCGCTCGAGTCCTTGTTATCAATGGAAACTCCGGGTCTGTTGATTTGGAAGAGTGTACAAGAGCTATTCAAGTCAACGAAAAAATGAAAGGTTCCATGTACTTCACCTGA

Transcript

asel_s0125.g43.t2

CGGGCCAGGCTACCTTGCATACtgtttggaatcgttttgttttgttttgttttgtgttTTCAATCAGGGCAAACGCCCTTTTATTAGTTTGCGAATTCTAGTTAGAAGTGACAGCGAATGAAAATTAATCTTATACCAATTAAACCAGTTGCCTTAATGTAACGATGGTGATTGTTGGTTAGTCTTACTGCAGTTTTCCCATTGACGAAATATGCCCGTTATAGTGGGCATAAAGGATTCACAGTATCTTGCTCTGTACAGCATTTTCTGGCATCGAACGTGTGCTTTTATAGATACAATCGAATTTTGCTCATCCGTTATCTTGTGTGCCGTACTTCACTCTTGTGTGAACCCCATCTGAGAACAATGCCAGTTGTTCACTCCCAGTAGACTAAAGGTGTTATTTATATGTAAAAATGCAAAGGGAATTGAACGAAATAGGTAATCGTGACAGAGAGAGAGGAATCAACGGGAAGGGTCGTCAGCAACCGCGGCCAGGAAGTAGCGAAAGTGACGCAGCTGCCATAGTTTCGGATCGTGAGGAAAAGCGAAACCTAGACGGAGAGGAAAGCGAAAGAACACTCGAGGGAACGGTTGGTCCAAGTCAAGGGACATATATCGGTACCAATCAAAGCCAGGAATCTGCTCTCACAGCACTTTCTACAGAACCGAAGTCTGAAGAGAAGACTGCGATCCCCTCAGCACGATCGCCAGATGAGAGACTAGGGCCGAGTGATTTTTCTCTCAGACCACAGACAGCTCCTTTTGTAAGACCATGTGGGAATACAGACAAATGTGAGGAGACGAGCAAATCCTGCGTTGCATCCACTACCTCTGAAGGTTCAGAAGATGGACAAGACATTACTAACTTGGCAGCAAAGCTGGGTTCCAACTTATCTATGCAAGGTACCATGGAAACACAGATGCCATCCAATCCCTTTACTCCAATTGGGCAAGCTTTATTCCCAATGGATGGTCAAGACAGACCCATTGAGGAAGGGTGTCATGTGAAGTCTGATTTAGACCAGAGTTTAAATGACCCCTCACAGTGGAAAGCCTCGCTGGTGAACATTGATGTGTCTGCAAAGGGATTTTACGAAAGTCAACCAGTTATAAAGTTTGTGTGTGAAACACTGGGTGTGCGGAATCTTGAAGACCGAAAAATTCAAATTGACAAAGAGAAGCTGAAGAAAGCTATAAGTGGTGTTCGTATAGAAACAACACATACGAGGCGGAAGTACACAGTTTGGGGAATGTCAAACCAATCTGCTGAAAAATTACAATTTGAAATTGAAGACGAGGCATCAAAGCTAACTACCAAAACAACTGTGGCCAGATACTTTCTTGACACATACGGGTTAGAGTTAAGATATCCTCATCTACCCTGCCTCCAAGTTGGCCAGGAAAAAGACTGTTTCCTTCCCATGGAGGTCTGTGCCATCATTCCTTGCCAAAAGAGGCACTTGTCTAAACAACAAATTGCAAATATGATCAGGAGTACGGCACGCCCTGCGCCAGAACAACAGGGGGAAATTCAACTTTTGCTTGGTCCCCAAGATAAAGCACTGACCCCACGTGATGGCTCTTGGGACATGCGCAATCAAGCCGTCGTTAAAAGCGCAAAGTTCGATATGTGGGCGTTGGTCTGTTTTGCTCGTTGCAATGAGGATCCACTAAGAAACTTTTGCCATCAAATGTCCATTGTGTCAAATCGTGAAGGAATGACTATAGTTGCACAGCCAACCTTAATTACATTTGGAAGAGGACCTGAAGAAGTTGAGCGATTGTTCTTTGACTGTTTGGAGCAATTTCCAGCACTTCAACTCATCATGGTTGTCCTTCCAGTTTTCGATAAAATACTCTACTCCGAAGTGAAACGCGTTGGCGATAGCGTGATCGGCATTCCTACACAGTGCGTTCAGATGAAACATGTGCAGCAGGCCAAACCTCAAGTGTGTGCTACCATCTCGCGTGATATCAATGCCAAACTTGGAGGAACCAATCATGTTCTTGACGATTCTGTTAAACCAGCGTTCAATGAACCTACTATCGTGTTTGGTGCCCATGTGACCCACCCCTCCCCAACAGAAAATGGCATTCCCTCCATTGCTGCGGTGGTGGCAAGTATGGATTATCATGCCTCGGAATATCACGCACGCGTCCGCGTGCAGAAGCACGAGAACGGTGGAGGTTCTCAGGTGATCATCACTGACCTCGCAGAGATTGTAAAAGAACTCCTCATCGAATTTATCAAAACTAATGGGTCTTGTAAGCCGTCTAAGATCTTGTTTTACCGTGATGGTGTCAGCGAGGGGCAGTTTGATCAAGTTCTTGTTCACGAAGTGCGCGCTGTGCAAGAAGCTTGTAGGAAACTTGAGAAGGACTATCGACCGCGCATCACGTTTGTCGTTGTACGGCAGAAACGACATCGCACTAGATTGTTTTCTGAAAACGGAAAAGAGGCTTCTGCTAAAGCACCTACTGCCCCACCAGAAACAACTGTGGACAGTGGGATTACTCGTCCATACGAATTCGATTTCTCAGTGTGCAGCCACGACAAAATTAAGGGAACAAGTCGACCAACTCATTATCGTGTCTTATATGACGACAATAATTTTACCGCAGCCAGCATGGAACAACTCACTTACGAGCTGTGCCAAGTTTATGCCAGGTGCACGCGGAGTGCGTCCATGCCAGCCCCTGCGCACTACGCACATTTGGCAGCTTCTCGCGCTCGAGTCCTTGTTATCAATGGAAACTCCGGGTCTGTTGATTTGGAAGAGTGTACAAGAGCTATTCAAGTCAACGAAAAAATGAAAGGTTCCATGTACTTCACCTGAATGGAGCAGTCACGTATTCCTTGGATGGGCTGGGAACAGTTCACATCTTCAACAAATTACACCATAAAATGGTTAAAGTACAGCGGATCTACTAGCGCAGTGAAATATAAAAAAAATCGTTGTCAATACTCCCTCGACAAAATTTAACGTTGACCCTTTTGGTTTTACTCAGGTTGTTGGGGCTGTTTCTTTTTGTTTCCTTAGCCTCAGTAATGATTTCAACAATCTAGTTGATTCTATTGTAATCATGTACTTTTTAACTTTCTAGGTCCATTGCATTTCTACTAGCCCTGCCATTGATTTTGACCGTTGTTACACTATCAAACTTCCGTGTCAAGTACTTAT

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9UKV8	Protein argonaute-2 OS=Homo sapiens OX=9606 GN=AGO2 PE=1 SV=3
Q8CJG0	Protein argonaute-2 OS=Mus musculus OX=10090 GN=Ago2 PE=1 SV=3
Q6QME8	Protein argonaute-2 OS=Bos taurus OX=9913 GN=AGO2 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000825 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF16487 all species →	ArgoMid	Mid domain of argonaute	Domain	Interproscan
PF02170 all species →	PAZ	PAZ domain	Domain	Interproscan
PF02171 all species →	Piwi	Piwi domain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR032473 all species →	Domain	Protein argonaute, Mid domain	Interproscan
IPR003100 all species →	Domain	PAZ domain	Interproscan
IPR003165 all species →	Domain	Piwi domain	Interproscan
IPR012337 all species →	Homologous_superfamily	Ribonuclease H-like superfamily	Interproscan
IPR036397 all species →	Homologous_superfamily	Ribonuclease H superfamily	Interproscan
IPR045246 all species →	Domain	Argonaute-like, PIWI domain	Interproscan
IPR036085 all species →	Homologous_superfamily	PAZ domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR22891 all species →	EUKARYOTIC TRANSLATION INITIATION FACTOR 2C	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0003727 all species →	Molecular Function	single-stranded RNA binding	Interproscan
GO:0004521 all species →	Molecular Function	RNA endonuclease activity	Interproscan
GO:0016246 all species →	Biological Process	regulatory ncRNA-mediated post-transcriptional gene silencing	Interproscan
GO:0035198 all species →	Molecular Function	miRNA binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for asel_s0125.g43.t2.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.