Gene detail

Detailed information of asel_s0126.g44.t2 in Acropora selago

Genomic Location: sc0000126_pilon:658055...705769
NR annotation: XP_044163345.1, RNA-binding motif, single-stranded-interacting protein 2-like isoform X3 [Acropora millepora]
Species Acropora selago · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

asel_s0126.g44.t2

CGTCACGCAATGATGTGAAATTAAGGCTTTTATAACGTTCGGAACCACCATTGTCTGAAAATCCAGACAACGTGTATTGAAGACTAAATCCCTTAAATTAACTGCTACAAAACAGGAGGTTTCAAGAATTGCTTCAAAAAGGGGTTACTAATGATGCAATTTGTAAGTGGAATGCTCCAAGTGTCCGAACGCCATGAAGTGAAAAGATAGAGTGACCTTGGTGAAGTCATCTTTTACCATGCAACAGTGCCTATTGAGTTTGGATGACCTGAGCACTCGTGGCATAATTCAGTTTTGCCGAATAGCCACCTTATTAGAAAAAAGCATGCATCAATCTCAGTGTCAGCGGTCGCCAGAATCCAGAAACGATTTGCCTGGCGGATAGTAGCCGACAATAAAAAATACATGACGTGGATGGTACATGGTTTAATAGCTCCTGGAAAACCATCAGTTGTAGTGAATGACATGAACGCTTACCAACTGTGTCTCTATGTAACAGCAGGATATGAAAAGCAGTATGTAAAATTACGGAACAAGTAAAGCGCCGTTAAAGGTGGAAAGACTTGTATCTTGGCCATCAGCAGTGGATCTAAACGTTCGTAATGAATGTGGCCAATAATCTCACTTTGAGAAACTGAATATGTCAACAAGAAGAAGTGCTTTGGAACAGCAGACTGCCTGGTATCGCAGAGATTCTACGCTAGGTAGACCAAGCTATAAGATTAGGGGGGCGACTGGTATGAAGAGGTCTCCGATCATTTGTAGGACTGCTGGCGTATAATGAGCGATTCATTAGCTCAGGTTCTAGAGACAGAGACGATGACTACGGATCGGACAAGCAACCAGGAACGCACGCACGGGTCCAAGGACACTGAATCTCACAGCTCACATGCTACGCACGATCCAGCTACGCCGCCAGATCACGCAAACACAGAGATACCAAGTAAAGCGCTTGAAGAAACGGAAACGCAATCAGTGGACGCCGAAAATCGCAACAAAAACGGACAGGAAAGAGATGACAAGAAGCAGGTTTCAATGAGGCAGCAACTGCAAGGAAGTAGGAAGAAACAGCCTTCAAACCTGACAAAAACGCAACAACAACATCAGCAGAAACCTCACCAAGGTGGACGTCCACCTAGAGCAAGCCCAGCAGGAACATGGCCATACCAGTCATGGACACCTGTAGGATTCACTCCTCAACGCTTCCCAGCTCCAATTTTTAACTTCCAACACGCAGGGGCGTACATACCAAGTAGTCCTCCTGCAAACTCATCTCAAAGACGCTTATCTGCAAGTGACAGCCATGATGAACCTGAAGAGAAACTTAGCAAAACAAACCTTTACATTAGAGGTCTTTCACCCGGAACAACTGATGATGATTTAAGTAATTTATGTAGCAGATATGGAAGTATTATTTCAACTAAAGCTATACTAGATAAGAATACTAATAAATGCAAAGGATATGGATTTGTGGATTTTGAGTCGCCAGCTGTAGCACAGAAAGCAGTGACAGCTTTGAAAAACAAAGGAATACAAGCTCAGATGGCAAAGCAACAAGAGCAAGATCCTACAAATCTATATTTTCTTTATCTTCCAAGTAATTTTGACGAAGCAAAATTAGAAGCAATGTTGAGAAGATATGGCAAGGTGATATCAACAAGAATTCTTAGAGATACAGACCACGAGAGCAGAGGAGTGGGATTTGCCAGGATGGAAAATACACAAATTTGTGAACAAATAATTAAAGACTTTAATGGTAAAAAGATTCCAGGTAGTATTGAATCACTAGTTGTAAAATTTGCTGATGGAGGTCCAAAGAAAAGACAACAGACACAACAAAACCATGATAGTTCTTGGCCACTTAACAGACCGGAGGGAGTGCATGTGTTGGGGTATGAACCACTTGTTATGCAGAATGGGTCCACAGTAAACACCTCAGCAAGAGTGACACATGCCACAGTTCTTCCAGGGCAAGGAGCAACACTTGTGCAGACAAACATACCATTAGCATACCAGCTTGCTGCTGCTGGTGGCGGCAGCTGGTTACCTCAACCATACATTCAGATGCAGCATCAACTACAACCGAGTCAACTTGCACCAACACCAGCTGCAACAGCAACTGCAGTGACACCCTCGTCAATCCAAGAACACAATGTTGCACCAATGCAACAGAGCTCTGTGCAACACTTAGCAAATCAGATGAGCCAGTTGCAAATGTCTGGCTCACAGTACATCACCAGTCCAGTACACAGTCCATTGCAAGGCTCATGGCAAATGATGCACCAGCATGGACAACCACATCCTCACTACATGTCACTTGAGGATCATTCAATGGTGGGTGAGGGCGACCCCCTTGGTCAACCTCCCATGTCACCACAAGCAGGAGGTATTCCGCAACATCTTTCTGATCATGCTCAATCAATGGAAGACCACAGGATGGGAAGCTATGCATCTCCTTATCAAAGAAAATGAAGATAACATAAGAAAAAGGACAACAGCAAATTATTTAAATTTGAAGAGATGAAATTGTTTCCGATGATGATGAAGATTGAAAACAGAGAAAGCGACATGAGGAAATGGCTTCAAGTCGTATTGGGACTGCAATGGCTTCAACACGGGTGTTAATTTAATTAAGTGAATTCAGCTCTTGTGTTTGTTGTTTCTTTTCGCTCAAAAGGAAAGGTACGAAGATGTGTATTTCTGGGGTTTTCTGTAATATTTCAAACGGTCTTAAAAGACTTTGTTGAAAACAACAATGTTCAGATGAAGAAACGACGCCAATACGACGTGTGAATTTGATGACAAGAAATTTCAAAGATTGAGCATCCTATTTGAACGGTGGATGAAAAGTCTTAAATGAGAACCAATGATCAAGATGAAATATTGGAAATTACAAACAATTTAAATGGGAAGCAGTTTGGAAAGTTGAGTCGTAGGTTTGATCGAGACTTGTTTTATTACCAACATTCCTACAAAGTGAAATGGAAAGTTTTAAAAGAAGGCGAATACCCAACTCTAGCTTGCGGAGCCAGTTTCTCGCAAGTTGGTGTTGCCGTTGTGATCAGGGCCGAGTTTTTCGACTGTTAGGTTGCAAGCCAAAACCTATTGGTTTTCATAGTGTTAAACCCAGCTAGAGACTGACTCGGCCTTGACTAACTCAACCCAGACGTATCTAAAGAGACTGTTCATGTTTGCATAACTGCACTATGATCTGGAAATGAGAAATAGCTGGCAACGGTGTGATAGTTACCCGAGTCATTTACAAGGAAAAGTGAAAATGCCCTTCATTGCACATTACTTCTTATGATAGCCCGGTTTCCATTTCAAGATATGGATCGATATACCATACTATGTCGGTATAGTATCTCGATTTTAACGTGTGAATGAATCAGGGAAACAGTGTTGATGGATGTGTTCTTTTGCTAAATCGATAGTTTCTTTCCCCTTATTGAATTGTATTTGTGATTTCAGTGGCCTGACTTCGACCGAATAATTTCTGTATAATTTTTCACAGCAAGGCCCCGTGATTGTGTCTCAGCAGGAGCGAGATAAATTTGTCCTTAAAAAGTCAAAGAAAGATTATTTTAAATTGGATTTTCCAGGAATTGGAAAACAGAAGAATATTGTGATCTTATTTAATTTCTAGTGTCAAGTTGAAAGGGTTCCTTAAGTTCGCCTGTTCAGTGGCATGGGAGCGAGGCACAGCCAATGCCTCGTTTTCATACCTCTGAAATGTGAGTGTGGGCTCAAGCTTTTTGACTTTCTATTTTGTGACCGTAATTCAACGATTTGTACAAAAGCTGAAACTAGATTTTCACGTGTGGGTGTGGCCGTATAAATTTTAGCCTAGGGAAATCAATTCGTTAGGTGCATGTGTAAAGTAGGCAGTGCACAAAAAAGAGGATGATCTTTTGTGGAAGAGTGTTTTTATTGTGGTTATGTTTGCGCTACCTTTAGCGAAGGCTGTGTGAATTCT

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q15434	RNA-binding motif, single-stranded-interacting protein 2 OS=Homo sapiens OX=9606 GN=RBMS2 PE=1 SV=1
Q3ZC34	RNA-binding motif, single-stranded-interacting protein 2 OS=Bos taurus OX=9913 GN=RBMS2 PE=2 SV=1
B4LFQ9	Protein alan shepard OS=Drosophila virilis OX=7244 GN=shep PE=3 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002156 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00076 all species →	RRM_1	RNA recognition motif	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR012677 all species →	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan
IPR000504 all species →	Domain	RNA recognition motif domain	Interproscan
IPR035979 all species →	Homologous_superfamily	RNA-binding domain superfamily	Interproscan
IPR002343 all species →	Family	Paraneoplastic encephalomyelitis antigen	Interproscan
IPR050502 all species →	Family	Eukaryotic RNA-binding	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR48025 all species →	OS02G0815200 PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:1990904 all species →	Cellular Component	ribonucleoprotein complex	Interproscan
GO:0003729 all species →	Molecular Function	mRNA binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K24990	RBMS; RNA-binding motif, single-stranded-interacting protein	-	Domain-containing proteins not elsewhere classified	ko04990	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.