Gene detail

Detailed information of asel_s0179.g3.t1 in Acropora selago

Genomic Location: sc0000179_pilon:43926...52717
NR annotation: GFO14619.1, endonuclease-reverse transcriptase [Plakobranchus ocellatus]

Gene Structure

More details in Jbrowse

Sequence

CDS

asel_s0179.g3.t1

atgatcccaaatttgttggagatccttcacgttgaagacctacgctgtgtacagttcctgcgcaatggaaaagttcgtgtGTCTTTCCGTGAGAAAGACGTCCGTGACCACTACTTGGTAGAAGGTCTGCCCTTTGGGGATCATGACATCCCAGTGACTAAAGATGGCCAGAAAGTGACGGCGTTGTACATCAGAGATCTTCCCTATGAAGTTCCAAGTGACGATCTCGTTGACTTCTTCTCGAATTACGGAGAAGTTCTTACCGTGGAACGTTCTGTGGCTGTGAATTTTCCTGGTCTCTGCAACGGCAACAGAATTCTCAAGTTGATCCTCAACGAAGATCTACCATATTTCTTGTCGGTGTGCGGCTACCAGTGTCGTGTGTGGTATCGTGGACAACCCCTTCAGTGTCTTGTGTGCCGTGAACGTCGTCATCGGGCCCAGTCCTGCCCACTCTCTGGCCGATGCCGCTATTGTCATCAAGTTGGCCATATGGCCAGAGATTGTGCGCGGGCCTGGGACCCACCTCCTTCTGTTCCTGTTGACGCTGATGTTGATGTTGTGAGTGTGTCTGATTCCGCTACTGTTATCGCAGATAATTGTGATCCTGAGCCTGTTGATAAACCATCTGATCCCGAGCCTCCTGTGAAACGTGTTTCAGATAAATTACCTGTCGCTGTCCCTGTGGAATTTGTTCCGGATAAGCCGCTAGTTGATGTGTCAATGACCAATACTACCAAGACGCGTGTTTCAGATGACTTACCTACTGTTAAAGTTTCGGATAAACCGCCTGCGGCTGACACCGTTCCTGTTTCAGATAAACCACCTGTTTCACCTACTGCTGCCACCGCTTCTGCTAAAGTTTCGGATAAACCGCCTGTGGATGATGATGTGCCAATCTCTAAACCTGCTGACAGCAGCCGTCCGGAACGCCGTTCAGCACTTGTAGAGCATGAACTCTCCCGACTTAACATCGACATAACTGCTCTCAGTGAGGTCCGTCTTGCAGACAAGGGTAGCCTCGTGGAACACGGCGCTGGCTACACCCTTTATTGGAATGGGAAACCGTCAACTGAGAGACGCCTGTCGGGCGTAGGATTCATGGTAAGGAATTCCATCTCCTCCAAACTGGACAGACTACCCACAGGCCACTCAGATCGCATCATGTCAATGCGTGTACTACTGGAAGGCAAACAACACCTCACACTCTTCAGTGTCTACGCTCCAACTCTTCTGGCAGACCCTGCAGATAAAGACATCTTCTATTCTGATCTGCGCAGACTCTTGAACAACACTCCTGAAGACGACAAGGTCCTTATCCTTGGCGACTTCAACGCTAGAGTTGCGAAGGACTGTCAAGCGTGGCAAGGAGTCCTCGGAAGACATGGTGTCGGTAACTGTAACGACAATGGGCGCCTCCTGCTCGAGCTCTGCGTAGAGCACCAACTTGTCATCACCAACACAATCTTTCAACAAAAAGACAGCCTGAAAACTACCTGGATGCACCCCCGGTCAAAACATTGGCAGCTACTTGACTATGTGCTAGTGCGTAAACGGGACCTGAGAGACGTTCTACATTCAAGAGTGATGCCTAGTGCAGAGTGCCACACTGATCACCACCTCGTTCGCTGCAAGCTCAGACTGCAGTTTAAGCCCAAACAAAGGAAGAAAGGCAATCCCAAGAAGAAACTCAACGTCGGCAGCCTGTGCCGGGAGGAGGTGAAAGCCAAGTTCCATGCAAACTTGCAGCAAATTCTCGACGAATCCCCTTCCACAAATGACCCCTCCCCTAGCATTCTGTGGGAGAACCTGAAATCAGCCATCCTGAAGACATTCGAAGAAGTCCTTGGGCACACAAAGAAGAAGAACAAAGACTGGTTCGATGAGAACAACAAGGAGATTCAGGACTTATTATCAGAGAAGAGGGCAGCTCATCAGGCCCATCTCTCACAGCCAACCTGCCATGTGAAGAAGGCGACCTTTCGACAAGCATGCAGCATGTTACAGCGCAAACTCAGAGAGTTACAAAACGATTGGTGGGACCGTCTGGCTAGGGAATCCCAGCTGTGCGCTGATGTTGGCGATTATAGAGGAAATTACCTTTAG

Transcript

asel_s0179.g3.t1

cagaagtttggtgccgctgagatgatcccaaatttgttggagatccttcacgttgaagacctacgctgtgtacagttcctgcgcaatggaaaagttcgtgtGTCTTTCCGTGAGAAAGACGTCCGTGACCACTACTTGGTAGAAGGTCTGCCCTTTGGGGATCATGACATCCCAGTGACTAAAGATGGCCAGAAAGTGACGGCGTTGTACATCAGAGATCTTCCCTATGAAGTTCCAAGTGACGATCTCGTTGACTTCTTCTCGAATTACGGAGAAGTTCTTACCGTGGAACGTTCTGTGGCTGTGAATTTTCCTGGTCTCTGCAACGGCAACAGAATTCTCAAGTTGATCCTCAACGAAGATCTACCATATTTCTTGTCGGTGTGCGGCTACCAGTGTCGTGTGTGGTATCGTGGACAACCCCTTCAGTGTCTTGTGTGCCGTGAACGTCGTCATCGGGCCCAGTCCTGCCCACTCTCTGGCCGATGCCGCTATTGTCATCAAGTTGGCCATATGGCCAGAGATTGTGCGCGGGCCTGGGACCCACCTCCTTCTGTTCCTGTTGACGCTGATGTTGATGTTGTGAGTGTGTCTGATTCCGCTACTGTTATCGCAGATAATTGTGATCCTGAGCCTGTTGATAAACCATCTGATCCCGAGCCTCCTGTGAAACGTGTTTCAGATAAATTACCTGTCGCTGTCCCTGTGGAATTTGTTCCGGATAAGCCGCTAGTTGATGTGTCAATGACCAATACTACCAAGACGCGTGTTTCAGATGACTTACCTACTGTTAAAGTTTCGGATAAACCGCCTGCGGCTGACACCGTTCCTGTTTCAGATAAACCACCTGTTTCACCTACTGCTGCCACCGCTTCTGCTAAAGTTTCGGATAAACCGCCTGTGGATGATGATGTGCCAATCTCTAAACCTGCTGACAGCAGCCGTCCGGAACGCCGTTCAGCACTTGTAGAGCATGAACTCTCCCGACTTAACATCGACATAACTGCTCTCAGTGAGGTCCGTCTTGCAGACAAGGGTAGCCTCGTGGAACACGGCGCTGGCTACACCCTTTATTGGAATGGGAAACCGTCAACTGAGAGACGCCTGTCGGGCGTAGGATTCATGGTAAGGAATTCCATCTCCTCCAAACTGGACAGACTACCCACAGGCCACTCAGATCGCATCATGTCAATGCGTGTACTACTGGAAGGCAAACAACACCTCACACTCTTCAGTGTCTACGCTCCAACTCTTCTGGCAGACCCTGCAGATAAAGACATCTTCTATTCTGATCTGCGCAGACTCTTGAACAACACTCCTGAAGACGACAAGGTCCTTATCCTTGGCGACTTCAACGCTAGAGTTGCGAAGGACTGTCAAGCGTGGCAAGGAGTCCTCGGAAGACATGGTGTCGGTAACTGTAACGACAATGGGCGCCTCCTGCTCGAGCTCTGCGTAGAGCACCAACTTGTCATCACCAACACAATCTTTCAACAAAAAGACAGCCTGAAAACTACCTGGATGCACCCCCGGTCAAAACATTGGCAGCTACTTGACTATGTGCTAGTGCGTAAACGGGACCTGAGAGACGTTCTACATTCAAGAGTGATGCCTAGTGCAGAGTGCCACACTGATCACCACCTCGTTCGCTGCAAGCTCAGACTGCAGTTTAAGCCCAAACAAAGGAAGAAAGGCAATCCCAAGAAGAAACTCAACGTCGGCAGCCTGTGCCGGGAGGAGGTGAAAGCCAAGTTCCATGCAAACTTGCAGCAAATTCTCGACGAATCCCCTTCCACAAATGACCCCTCCCCTAGCATTCTGTGGGAGAACCTGAAATCAGCCATCCTGAAGACATTCGAAGAAGTCCTTGGGCACACAAAGAAGAAGAACAAAGACTGGTTCGATGAGAACAACAAGGAGATTCAGGACTTATTATCAGAGAAGAGGGCAGCTCATCAGGCCCATCTCTCACAGCCAACCTGCCATGTGAAGAAGGCGACCTTTCGACAAGCATGCAGCATGTTACAGCGCAAACTCAGAGAGTTACAAAACGATTGGTGGGACCGTCTGGCTAGGGAATCCCAGCTGTGCGCTGATGTTGGCGATTATAGAGGAAATTACCTTTAGATCTAAGATCTTCGAATCAACTATGAACTATTCAATGAGGGTATCTTGCGCTTCATCGTCGACAAATAAAGATGAAATACTCAT

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03372	Exo_endo_phos	Endonuclease/Exonuclease/phosphatase family	Domain	Interproscan
PF00076	RRM_1	RNA recognition motif	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036691	Homologous_superfamily	Endonuclease/exonuclease/phosphatase superfamily	Interproscan
IPR036875	Homologous_superfamily	Zinc finger, CCHC-type superfamily	Interproscan
IPR001878	Domain	Zinc finger, CCHC-type	Interproscan
IPR035979	Homologous_superfamily	RNA-binding domain superfamily	Interproscan
IPR027124	Family	SWR1-complex protein 5/Craniofacial development protein 1/2	Interproscan
IPR005135	Domain	Endonuclease/exonuclease/phosphatase	Interproscan
IPR000504	Domain	RNA recognition motif domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23227	BUCENTAUR RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0008270	Molecular Function	zinc ion binding	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0006338	Biological Process	chromatin remodeling	Interproscan
GO:0003824	Molecular Function	catalytic activity	Interproscan
GO:0003723	Molecular Function	RNA binding	Interproscan