Gene detail

Detailed information of asel_s0233.g6.t1 in Acropora selago

Genomic Location: sc0000233_pilon:186536...209023
NR annotation: XP_029186684.2, LOW QUALITY PROTEIN: pre-mRNA-splicing factor CWC22 homolog [Acropora millepora]
Species abbreviation ASELA · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

asel_s0233.g6.t1

ATGGCTGCAGTAGAAGGTTCAAGAATACGAAGCATAGTCCAGACTGTGCAACATTCGAATTCACCGAACGCTGGTCCTGCAAAGTCAAGGTCGCGTTCGAGATCGCCTCAAGACCGACAaaaacaaagaaaagaagataaagagaatagAAGAAGAGATTATGGTGATGACTACAGGAGACATCACAGGAGAAAACGACGCAGCAATAGTTATGATGATGATAGATCTCGAAGAAAAGATCGTCACATTAGACATGAGCGAGACAGGAAGCATAGAAATAGCGATGAACATGATGAGAGGGAAGGTGTTAGAAGAAGAAGAGAAAGAGATTACAAATCAGATAGAAGGCGACGTGATACCCCCTCTGATGATGAGAGAGAACAAGAGAGGAGAATGCGTAGCCATGTTGAAGAACGAAATCAAAATTATTATGCTTCCGAGAGTGAGGTAAAAGTGACAGAAAAGAATGATGAGAAAAGCGAGGAAAGTTCAGCGCCTGTGAAGAAGAAGGTGGATCCTAACAACCCTCTCCTTACAAAAACAGGAGGTGCATATATTCCTCCTGCAAGACTGAAAATGATGCAAGAGAGTATTGAAGACAAGAGCAGTGAAGCTTATCAGCGACTTAGTTGGGAAGCACTAAAGAAAAGCATCAATGGCCTTGTCAATAAGGTTAACACATCAAACATTGGTAATATCGTCAGGGAGCTTTTTCAAGAAAACATTGTTCGAGGAAGAGGTGTGCTTTGCCAGTCGATCATCCGTGCGCAGGCTGCTTCTCCAACATTCACTCACGTCTATGCTGCACTTGTGGCCATTCTCAATACAAAGTTTCCAAAGAATGGAGAACTTCTTCTGCGTCGGCTAATATTGCAATTTCGACGAGCGTACAGGAGGAATGATAAGACAGTGTGTTTGTCTTCCACAAGATTTGTTGCACATTTGGTCAACCAACAAGTGGCTCATGAGCTTCTAGCGCTGGAAATTTTGACACTGCTTCTTCACAAACCCACAGATGACAGTGTGGAGGTTGCTATTGGGTTTTTGAAGGAAGTTGGATTAAAGCTGACTGAAGTTTCATCTCGTGGAGTTCATGCTGTGTTTGAACGACTTCGGAACATTCTCCACAGCGCAGAAATTGATAAACGCGTACAGTACATGATTGAAGTGATGTTTGCTATCAGAAAAGATGGTTTTAAGGATCACCCAGCTGTGTTACCAGAGTTGGATCTTGTGGAGGAGGAAGATCAAATAACACATTTACTGCGACTAGAAGAGCAAGCCAAAGCTGAAGAAATTTTAAATATCTTCAAGTTTGATCCAGATTTTTTAGAGAATGAAAATAAATACAAAGAAATTAAGCAAGATATTCTTGGCGAAAGCGATTCGAATGAGACGTCAGGAgacgatgacgaagatgatgacgatgacgaaaacgatgatgatgaagaAAACAAAGATGACCAGAAAATGGAAATCATCGATCACACCGAAACGAACCTTATAGCCTTACGAAGAACTATTTACCTTACCATTCAGTCCAGCCTGGACTTTGAGGAGTGTGCTCACAAACTTCTGAAAATGCAGCTCAAAGATGAACAACTGCCCGAGTTTTGTACCATGGTAATAGACTGCTGTGCTCAACAGAGGTCATATGAGAAATTCTTCGGGTTGCTTGCTCAGAGATTTTGCCAGCTGAACAAGATCTATATGGAGGAGTACATCAGGGCATTTAACGAGCAATACGAAACCATCCATCGCCTTGAAACAAACAAGCTACGGAATGTTGCGAAATTTTTTGCCCATCTTCTCTACACGGACGCCATTCCTTGGACGGTACTAGATTGTATTAAGTTAAATGAAGATGACACAACATCATCGAGCCGTGTTTTCATCAAAATTCTCTTCCAAGAACTTGCAGAATTCTTGGGTCTTCCTAAACTCAACGAACGCTTGAAAGATCCATTCCTCTCAGAGTATTTCGAAGGGATTTTTCCGCGAGATAATCCGCGTAACACGCGTTTTTCCATCAATTTCTTTACGTCTATTGGATTAGGAGGAGTCACTGATGAACTTCGCGTGCATTTAAAGAACGCCCCTAAAGCTATCATGGCGCAGCAGAGGCCTAGGGCGAGTGATAGCGACTCCGATTCCTCTGATGACAGTAGCAGTGAAGAGAGCTCAAGCTCCGACGAATCGTCAGATTCTTCCGAAGAATCGTCGGAAGATGATCGGAAGGAAAGGCATAGAAGGAAGCAAGCTCACATGAAAAAGGATACAAGGAAGCACAAGAAAAAACGATGA

Transcript

asel_s0233.g6.t1

TGATCATTTCTCTTTTCCTGAATGAGTCGTACGTTAAATCTTTAGCGAACCATTCAGTTACGCTGAAGAAATACCAAAAATGGCTGCAGTAGAAGGTTCAAGAATACGAAGCATAGTCCAGACTGTGCAACATTCGAATTCACCGAACGCTGGTCCTGCAAAGTCAAGGTCGCGTTCGAGATCGCCTCAAGACCGACAaaaacaaagaaaagaagataaagagaatagAAGAAGAGATTATGGTGATGACTACAGGAGACATCACAGGAGAAAACGACGCAGCAATAGTTATGATGATGATAGATCTCGAAGAAAAGATCGTCACATTAGACATGAGCGAGACAGGAAGCATAGAAATAGCGATGAACATGATGAGAGGGAAGGTGTTAGAAGAAGAAGAGAAAGAGATTACAAATCAGATAGAAGGCGACGTGATACCCCCTCTGATGATGAGAGAGAACAAGAGAGGAGAATGCGTAGCCATGTTGAAGAACGAAATCAAAATTATTATGCTTCCGAGAGTGAGGTAAAAGTGACAGAAAAGAATGATGAGAAAAGCGAGGAAAGTTCAGCGCCTGTGAAGAAGAAGGTGGATCCTAACAACCCTCTCCTTACAAAAACAGGAGGTGCATATATTCCTCCTGCAAGACTGAAAATGATGCAAGAGAGTATTGAAGACAAGAGCAGTGAAGCTTATCAGCGACTTAGTTGGGAAGCACTAAAGAAAAGCATCAATGGCCTTGTCAATAAGGTTAACACATCAAACATTGGTAATATCGTCAGGGAGCTTTTTCAAGAAAACATTGTTCGAGGAAGAGGTGTGCTTTGCCAGTCGATCATCCGTGCGCAGGCTGCTTCTCCAACATTCACTCACGTCTATGCTGCACTTGTGGCCATTCTCAATACAAAGTTTCCAAAGAATGGAGAACTTCTTCTGCGTCGGCTAATATTGCAATTTCGACGAGCGTACAGGAGGAATGATAAGACAGTGTGTTTGTCTTCCACAAGATTTGTTGCACATTTGGTCAACCAACAAGTGGCTCATGAGCTTCTAGCGCTGGAAATTTTGACACTGCTTCTTCACAAACCCACAGATGACAGTGTGGAGGTTGCTATTGGGTTTTTGAAGGAAGTTGGATTAAAGCTGACTGAAGTTTCATCTCGTGGAGTTCATGCTGTGTTTGAACGACTTCGGAACATTCTCCACAGCGCAGAAATTGATAAACGCGTACAGTACATGATTGAAGTGATGTTTGCTATCAGAAAAGATGGTTTTAAGGATCACCCAGCTGTGTTACCAGAGTTGGATCTTGTGGAGGAGGAAGATCAAATAACACATTTACTGCGACTAGAAGAGCAAGCCAAAGCTGAAGAAATTTTAAATATCTTCAAGTTTGATCCAGATTTTTTAGAGAATGAAAATAAATACAAAGAAATTAAGCAAGATATTCTTGGCGAAAGCGATTCGAATGAGACGTCAGGAgacgatgacgaagatgatgacgatgacgaaaacgatgatgatgaagaAAACAAAGATGACCAGAAAATGGAAATCATCGATCACACCGAAACGAACCTTATAGCCTTACGAAGAACTATTTACCTTACCATTCAGTCCAGCCTGGACTTTGAGGAGTGTGCTCACAAACTTCTGAAAATGCAGCTCAAAGATGAACAACTGCCCGAGTTTTGTACCATGGTAATAGACTGCTGTGCTCAACAGAGGTCATATGAGAAATTCTTCGGGTTGCTTGCTCAGAGATTTTGCCAGCTGAACAAGATCTATATGGAGGAGTACATCAGGGCATTTAACGAGCAATACGAAACCATCCATCGCCTTGAAACAAACAAGCTACGGAATGTTGCGAAATTTTTTGCCCATCTTCTCTACACGGACGCCATTCCTTGGACGGTACTAGATTGTATTAAGTTAAATGAAGATGACACAACATCATCGAGCCGTGTTTTCATCAAAATTCTCTTCCAAGAACTTGCAGAATTCTTGGGTCTTCCTAAACTCAACGAACGCTTGAAAGATCCATTCCTCTCAGAGTATTTCGAAGGGATTTTTCCGCGAGATAATCCGCGTAACACGCGTTTTTCCATCAATTTCTTTACGTCTATTGGATTAGGAGGAGTCACTGATGAACTTCGCGTGCATTTAAAGAACGCCCCTAAAGCTATCATGGCGCAGCAGAGGCCTAGGGCGAGTGATAGCGACTCCGATTCCTCTGATGACAGTAGCAGTGAAGAGAGCTCAAGCTCCGACGAATCGTCAGATTCTTCCGAAGAATCGTCGGAAGATGATCGGAAGGAAAGGCATAGAAGGAAGCAAGCTCACATGAAAAAGGATACAAGGAAGCACAAGAAAAAACGATGAAATAACACGTTAAGGATTTAATAAATACCGAGAGTCTTGGAACTGTTAtaggctgatttagcaacaatacgggaccgtcagggaactacaggagggtgcgcagaatagtctgaattctgcttcaatttagttgacaatatttaggtcagtgtaatgtgcgcgtcttcgtctggtaacgtttccgatctcccgctaaatcagctaatTAACAAAGACTGCCTCATATATGGTGCTGGAAATTGGTTTGAGTGAATGCTTTTTATCATATCTCCTTTTATCATCGAAGAGTTCCCTTGTTTTACTCCTTCTCGTTACACTTTAGAGAGGAAAGATGTAAATAAAATCCCTATCACGTTTTGCACCATTAGTCCATCTTGCAtagagtggtttgcaaatggtcgaaaacccaattctaaagtaataactcagaccacccacaacaggagcaaacagCTcaagatgcagttggtctctgttttgcttttcaatgggtgaaggacaggtgcaagattttttttaacccatcataacgcatagtacctgcaatcgcgtaattatattcgacagtcatttgaaaactgttctatatgaGAGAAGTATTCCATAACTGGACTTTGAAATAAAGTTGGATAACAACCGATTAATTCTCTATATTTGGCCCGCATTTTCGTCCAGTGCAGTTCCTTTATTTTTATCATGATTATTACTGTATTTATTAATGTTTTTCACCAAATACAGAAATGTTCTTAAACACTTTCTGCACCATTATTTACCTTCTTGGTGACTAATGTCAtaatagggagtttgagaagctactacgactgctgcaacgaaaacgttacatttaaatagaactttgcgttaggttaaatgttttacgattattccttatgggtcacgttataaaaaaataggcgaagt

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q8C5N3	Pre-mRNA-splicing factor CWC22 homolog OS=Mus musculus OX=10090 GN=Cwc22 PE=1 SV=1
Q9HCG8	Pre-mRNA-splicing factor CWC22 homolog OS=Homo sapiens OX=9606 GN=CWC22 PE=1 SV=3
Q52KN9	Pre-mRNA-splicing factor CWC22 homolog OS=Xenopus laevis OX=8355 GN=cwc22 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002984 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02847 all species →	MA3	MA3 domain	Repeat	Interproscan
PF02854 all species →	MIF4G	MIF4G domain	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR003891 all species →	Domain	Initiation factor eIF-4 gamma, MA3	Interproscan
IPR050781 all species →	Family	Pre-mRNA-splicing factor CWC22	Interproscan
IPR003890 all species →	Domain	MIF4G-like, type 3	Interproscan
IPR016024 all species →	Homologous_superfamily	Armadillo-type fold	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR18034 all species →	CELL CYCLE CONTROL PROTEIN CWF22-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000398 all species →	Biological Process	mRNA splicing, via spliceosome	Interproscan
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0071013 all species →	Cellular Component	catalytic step 2 spliceosome	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K13100	CWC22; pre-mRNA-splicing factor CWC22	-	Spliceosome	ko03041	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.