Gene detail

Detailed information of asel_s0270.g37.t1 in Acropora selago

Genomic Location: sc0000270_pilon:363185...379935
NR annotation: XP_015751774.1, PREDICTED: uncharacterized protein LOC107331677 [Acropora digitifera]

Gene Structure

More details in Jbrowse

Sequence

CDS

asel_s0270.g37.t1

ATGATATGTGATAAGGATTATGTGGAGATTCAAGATGGCGCCCATTCAAACAGTGACGTCATTGTACGTTTGTGCGGTCATCAGGAACCAGGAAGGAGCATATTTTCGACAGGCCGACATTTACTAATATATTTTGAAACAGATGCCTTAAGGGCTGATAAAGGCTTTGAAGCTGTTTATGAAGCTGTCGTGTTAACCCAAGGGTTTCTGAAAGGATTAATCCAGCAAAAAAATAACTGCTCAATAGCAAAGGGGCCTGCTAAAGAATGCAGATGTGATAGACATGAAAACGGCGGCAAAGTATATCTCAGAGTGAATTGTTCAAGTTTACAAATGACTCAGATTCCCAATGGTGACCTCCCTGCAACCACAAAACTTCTTGATCTGAGCAGTAACAAGTTACAGAGGATTGAGGGCGCAAATTTTACTGGTCTCCGATTTATTACGGAGTTAAATCTCGCAAGCAATCGGATTGACAGCGTCGCAAACGAGAGCTTCCGAACTTTGACAAGCCTGTTTGCCCTAAATTTGTCCAAAAACCGTTTGCAACAAGTTCACTGGAAAATGTTTTTGGGGCCGCTTTCGTTGATGAGCCTGAAGTTGGGGCATAACAACATCTCCGAGGTGACGTCTGGTGCACTTCCCTCTGTTCCTGAGCTCTCATTCTTGGATTTGTCCCACAATAACATCGAGAAGATCCATCCAGCAGCGTTTGAAGGTGTTCCCAAAGTTTTTATGCTTGAACCTGCCAGGAAAGTTGTCAATTATGAACTTGCTCTGCCACGTAATATTGAGATTGTCATGTCTTCATCAGGATTCCAATGCAATTACCATGGCAACAACGTCAACACCTGTCGCCCTTGTCCTCTTGGGACATATGAAGTAAACCAAGAATGTATTCCATGTCCAGCAGGTGGCGTCTATCAAGACGAGGTAGGGTACACAGGCAGATCCTCTCATGGCATTGGGTGTAAGTCATGCCCGGTAGGACACTATGTGCCACCCACAGCTGCTCCAGGCAAGGCCGTTAGAGAATGTGTTTTGTGTCCACAAGGTACCGATTACTCGCGATACGCCGGTTTCAAAGGTTGCGAGTGCCTTCCGAACTTTTATCGATTGGATCGATTCGGTGGTTGCACACAATGTCCTTTACGAGGCTTGTCGTGTCAAAATGAATCCATCAAACTTCAAGCTGGCTTCTACTGGAAATGGCCGTCAAAAAAGAGTCTTGAACTGTACCAGACGTTTTCGCGGGATCTCATGATCACCGACGCTTCATACCGAAGTGAGCGATTTAACGGGCAAATACCCGAGGTTTACGCGTGTCCCGTGCCTGAAGCATGCCTTGGAGGTGTGGATTCGAGGTGTTCCCATGGTTACGAGGGTCCTCTCTGTGCTGCTTGCAGCGTGGGATATTATCAACTTCTGAACAATTGTCGCAAGTGTCCTAAAACTCTTTGGTTTGTTTTACAGGTCTCTGGAATCGTAATCGTTATTGGTTTTCTCAGCGTGAGTCTCGTTCTTGCCAGAAAAAAGAAATGCAATCCGAACAGGACTGTAAGCGACATGGCACTTGCCCGGCTGAAAATCCTGATCGGCTTTTATCAGGCCACTTCCGGTACCTTGAACGCCTTTTCGTATGTTGCTTGGCCAAATGCTCTATTGACCGTTGTGCAATATGCAAACGTGATACAGCTCAATCTCTTGCAGATCATTCCATTGCAGTGCTTTGTTGATACTTTTACCTTAAACGCCTATACCAGGTTTTTGATCGCCGTGGGAACAAACTCCACAGTCCTCTTCTTAGCAGTATCGATTTATCATCTAAGGAAACGCTTCATGTTAAGGAATACTGCCCTTAGCGAAGCCCAATTGGCAGAATCCATTGCATGTATCAAAACACAGACATATCGCATCGTGTGCCTTGTGCTCTTCATTACATATCCCTGGACATGCGACGCTGTTTTGCAGATTCTACCGGCCACCTGTCAACCGATTTGCTCCAGTGACAACAGTGATTCTTGCCAGTTTTTCTTACGCGCTGACGTCACTGTCCAGTGCTTTACCGATAAGTACAACAAATACACGATAGCAGTGTACCTTATGCTCGCCGTGGTGGCTGCTGTGCCGGGAATCATTTTCCTTCTGCTTTGGAAATACCACCACAGGAGAGTCTACATACAATCGGAAGCTCAGAGTTACATTGGAAGGGAGGTTTCTCAAGGTTTAAGCTTCCTTCACGAGAACTATGCTCCAAACTGCTGGTTCTGGGAAATTATCGAACTGCTGAGAAAGGTGTGGCTGACGTCGGCGCTATTCTTGATGGGGGCAGAAACGAGAAGCCATCTGGGAGCCGCAGCCATCGCATCCGGGACCTACTGCATTCTTGTGGCTTATTATAAGCCAATCAGAGACAAATTCGAGCACTGGTTGCAGTTGACATCACTGTTAGCGATCTTTGTGACTATGAATATTGGAATTCTGTTGAAGATACCAACGGAAGAAGTATATTCCCATGATGCAGCCGGAAGAGATTCCACCTTCCTGACTGTTGCGCTAGTGGCGGTCAATGTCACTGTTATTGGAATAATCATCGTTCAGTACATCGCGACATTAGTCACTGCCTTGAAACGCCTGAGAAGCAACCCGCAGTGTGGACCCGAATGCTGTATAACATTCTTGACGCAGATGATGGGAGCTGGGGGTGACGCCACGAGTATTGACAACACAGGAGATATTCCAAACTCAATGGAATTGCGACCTACATCCGCTACCAAGTGA

Transcript

asel_s0270.g37.t1

GTATCACACTGTGGAACATAACAGTTCCAACTGGAAGACAAATCAAATTCAACTTTACTTCTTTCCAACTTTACCCTTCAATGATATGTGATAAGGATTATGTGGAGATTCAAGATGGCGCCCATTCAAACAGTGACGTCATTGTACGTTTGTGCGGTCATCAGGAACCAGGAAGGAGCATATTTTCGACAGGCCGACATTTACTAATATATTTTGAAACAGATGCCTTAAGGGCTGATAAAGGCTTTGAAGCTGTTTATGAAGCTGTCGTGTTAACCCAAGGGTTTCTGAAAGGATTAATCCAGCAAAAAAATAACTGCTCAATAGCAAAGGGGCCTGCTAAAGAATGCAGATGTGATAGACATGAAAACGGCGGCAAAGTATATCTCAGAGTGAATTGTTCAAGTTTACAAATGACTCAGATTCCCAATGGTGACCTCCCTGCAACCACAAAACTTCTTGATCTGAGCAGTAACAAGTTACAGAGGATTGAGGGCGCAAATTTTACTGGTCTCCGATTTATTACGGAGTTAAATCTCGCAAGCAATCGGATTGACAGCGTCGCAAACGAGAGCTTCCGAACTTTGACAAGCCTGTTTGCCCTAAATTTGTCCAAAAACCGTTTGCAACAAGTTCACTGGAAAATGTTTTTGGGGCCGCTTTCGTTGATGAGCCTGAAGTTGGGGCATAACAACATCTCCGAGGTGACGTCTGGTGCACTTCCCTCTGTTCCTGAGCTCTCATTCTTGGATTTGTCCCACAATAACATCGAGAAGATCCATCCAGCAGCGTTTGAAGGTGTTCCCAAAGTTTTTATGCTTGAACCTGCCAGGAAAGTTGTCAATTATGAACTTGCTCTGCCACGTAATATTGAGATTGTCATGTCTTCATCAGGATTCCAATGCAATTACCATGGCAACAACGTCAACACCTGTCGCCCTTGTCCTCTTGGGACATATGAAGTAAACCAAGAATGTATTCCATGTCCAGCAGGTGGCGTCTATCAAGACGAGGTAGGGTACACAGGCAGATCCTCTCATGGCATTGGGTGTAAGTCATGCCCGGTAGGACACTATGTGCCACCCACAGCTGCTCCAGGCAAGGCCGTTAGAGAATGTGTTTTGTGTCCACAAGGTACCGATTACTCGCGATACGCCGGTTTCAAAGGTTGCGAGTGCCTTCCGAACTTTTATCGATTGGATCGATTCGGTGGTTGCACACAATGTCCTTTACGAGGCTTGTCGTGTCAAAATGAATCCATCAAACTTCAAGCTGGCTTCTACTGGAAATGGCCGTCAAAAAAGAGTCTTGAACTGTACCAGACGTTTTCGCGGGATCTCATGATCACCGACGCTTCATACCGAAGTGAGCGATTTAACGGGCAAATACCCGAGGTTTACGCGTGTCCCGTGCCTGAAGCATGCCTTGGAGGTGTGGATTCGAGGTGTTCCCATGGTTACGAGGGTCCTCTCTGTGCTGCTTGCAGCGTGGGATATTATCAACTTCTGAACAATTGTCGCAAGTGTCCTAAAACTCTTTGGTTTGTTTTACAGGTCTCTGGAATCGTAATCGTTATTGGTTTTCTCAGCGTGAGTCTCGTTCTTGCCAGAAAAAAGAAATGCAATCCGAACAGGACTGTAAGCGACATGGCACTTGCCCGGCTGAAAATCCTGATCGGCTTTTATCAGGCCACTTCCGGTACCTTGAACGCCTTTTCGTATGTTGCTTGGCCAAATGCTCTATTGACCGTTGTGCAATATGCAAACGTGATACAGCTCAATCTCTTGCAGATCATTCCATTGCAGTGCTTTGTTGATACTTTTACCTTAAACGCCTATACCAGGTTTTTGATCGCCGTGGGAACAAACTCCACAGTCCTCTTCTTAGCAGTATCGATTTATCATCTAAGGAAACGCTTCATGTTAAGGAATACTGCCCTTAGCGAAGCCCAATTGGCAGAATCCATTGCATGTATCAAAACACAGACATATCGCATCGTGTGCCTTGTGCTCTTCATTACATATCCCTGGACATGCGACGCTGTTTTGCAGATTCTACCGGCCACCTGTCAACCGATTTGCTCCAGTGACAACAGTGATTCTTGCCAGTTTTTCTTACGCGCTGACGTCACTGTCCAGTGCTTTACCGATAAGTACAACAAATACACGATAGCAGTGTACCTTATGCTCGCCGTGGTGGCTGCTGTGCCGGGAATCATTTTCCTTCTGCTTTGGAAATACCACCACAGGAGAGTCTACATACAATCGGAAGCTCAGAGTTACATTGGAAGGGAGGTTTCTCAAGGTTTAAGCTTCCTTCACGAGAACTATGCTCCAAACTGCTGGTTCTGGGAAATTATCGAACTGCTGAGAAAGGTGTGGCTGACGTCGGCGCTATTCTTGATGGGGGCAGAAACGAGAAGCCATCTGGGAGCCGCAGCCATCGCATCCGGGACCTACTGCATTCTTGTGGCTTATTATAAGCCAATCAGAGACAAATTCGAGCACTGGTTGCAGTTGACATCACTGTTAGCGATCTTTGTGACTATGAATATTGGAATTCTGTTGAAGATACCAACGGAAGAAGTATATTCCCATGATGCAGCCGGAAGAGATTCCACCTTCCTGACTGTTGCGCTAGTGGCGGTCAATGTCACTGTTATTGGAATAATCATCGTTCAGTACATCGCGACATTAGTCACTGCCTTGAAACGCCTGAGAAGCAACCCGCAGTGTGGACCCGAATGCTGTATAACATTCTTGACGCAGATGATGGGAGCTGGGGGTGACGCCACGAGTATTGACAACACAGGAGATATTCCAAACTCAATGGAATTGCGACCTACATCCGCTACCAAGTGAGATGCCCCACGCCGAAAGAAAAAAAACATAAAAGA

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13855	LRR_8	Leucine rich repeat	Repeat	Interproscan
PF00431	CUB	CUB domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001611	Repeat	Leucine-rich repeat	Interproscan
IPR000859	Domain	CUB domain	Interproscan
IPR035914	Homologous_superfamily	Spermadhesin, CUB domain superfamily	Interproscan
IPR032675	Homologous_superfamily	Leucine-rich repeat domain superfamily	Interproscan
IPR003591	Repeat	Leucine-rich repeat, typical subtype	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24366	IG(IMMUNOGLOBULIN) AND LRR(LEUCINE RICH REPEAT) DOMAINS	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan