Genomic Location: sc0000271_pilon:247916...286546
NR annotation: XP_029193411.2, chromodomain-helicase-DNA-binding protein 1-like isoform X1 [Acropora millepora]
Species Acropora selago · all data for this species · gene families
| CDS |
| asel_s0271.g16.t2 |
| Transcript |
| asel_s0271.g16.t2 |
| Protein |
| asel_s0271.g16.t2 |
| UniProt accession | Description |
|---|---|
| O14646 | Chromodomain-helicase-DNA-binding protein 1 OS=Homo sapiens OX=9606 GN=CHD1 PE=1 SV=2 |
| P40201 | Chromodomain-helicase-DNA-binding protein 1 OS=Mus musculus OX=10090 GN=Chd1 PE=1 SV=3 |
| B6ZLK2 | Chromodomain-helicase-DNA-binding protein 1 OS=Gallus gallus OX=9031 GN=CHD1 PE=1 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0003472 (this species only) |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF00385 all species → | Chromo | Chromo (CHRromatin Organisation MOdifier) domain | Domain | Interproscan |
| PF00176 all species → | SNF2-rel_dom | SNF2-related domain | Domain | Interproscan |
| PF18375 all species → | CDH1_2_SANT_HL1 | CDH1/2 SANT-Helical linker 1 | Domain | Interproscan |
| PF00271 all species → | Helicase_C | Helicase conserved C-terminal domain | Domain | Interproscan |
| PF13907 all species → | CHD1-like_C | Chromodomain-helicase-DNA-binding protein 1-like, C-terminal | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR027417 all species → | Homologous_superfamily | P-loop containing nucleoside triphosphate hydrolase | Interproscan |
| IPR025260 all species → | Domain | Chromodomain-helicase-DNA-binding protein 1-like, C-terminal domain | Interproscan |
| IPR000953 all species → | Domain | Chromo/chromo shadow domain | Interproscan |
| IPR001650 all species → | Domain | Helicase, C-terminal domain-like | Interproscan |
| IPR023779 all species → | Conserved_site | Chromo domain, conserved site | Interproscan |
| IPR016197 all species → | Homologous_superfamily | Chromo-like domain superfamily | Interproscan |
| IPR023780 all species → | Domain | Chromo domain | Interproscan |
| IPR000330 all species → | Domain | SNF2, N-terminal | Interproscan |
| IPR049730 all species → | Domain | SNF2/RAD5-like, C-terminal helicase domain | Interproscan |
| IPR040793 all species → | Domain | CDH1/2, SANT-Helical linker 1 | Interproscan |
| IPR014001 all species → | Domain | Helicase superfamily 1/2, ATP-binding domain | Interproscan |
| IPR038718 all species → | Homologous_superfamily | SNF2-like, N-terminal domain superfamily | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR45623 all species → | CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0005524 all species → | Molecular Function | ATP binding | Interproscan |
| GO:0140658 all species → | Molecular Function | ATP-dependent chromatin remodeler activity | Interproscan |
| GO:0000785 all species → | Cellular Component | chromatin | Interproscan |
| GO:0003677 all species → | Molecular Function | DNA binding | Interproscan |
| GO:0003682 all species → | Molecular Function | chromatin binding | Interproscan |
| GO:0005634 all species → | Cellular Component | nucleus | Interproscan |
| GO:0006338 all species → | Biological Process | chromatin remodeling | Interproscan |
| GO:0006357 all species → | Biological Process | regulation of transcription by RNA polymerase II | Interproscan |
| GO:0016887 all species → | Molecular Function | ATP hydrolysis activity | Interproscan |
| GO:0034728 all species → | Biological Process | nucleosome organization | Interproscan |
| GO:0042393 all species → | Molecular Function | histone binding | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K11367 | CHD1; chromodomain-helicase-DNA-binding protein 1 | EC:5.6.2.- | Chromosome and associated proteins | ko03036 | deepkoala |
