Gene detail

Detailed information of asel_s0312.g17.t2 in Acropora selago

Genomic Location: sc0000312_pilon:321316...338457
NR annotation: XP_029201649.2, mediator of RNA polymerase II transcription subunit 16-like [Acropora millepora]

Gene Structure

More details in Jbrowse

Sequence

CDS

asel_s0312.g17.t2

ATGGATTTGATTTACAACGTTGTTTGGTCAACAACGAAGCCTTTAAAAAGCAACCTTTGTGGTAAAGTGGTTGTTGCCTGGTCTTGTCGGAATCTGGTTGCCTTTAGCACAGGATACAGGAAACTTGATAACTTGGATGGACAAAGTTCTAGTTCTATAAATGATGAAAATTCAAGGTCACCAGTTTGTAATGCAATAAATATTTTGGATCCAGATTCACCATGGGATGTCTGTTGTTTCAGTTCTGGTCACAAGGAATTGATTCAAAGTCTAACATGGGATGGCACTGGATCAAGACTTCTATCCTCTGATTTAGTTGGAATATGCAAGCTCTGGGCAATGAAGGATCACATGATTAATGACTGGGAATGCATTAGTACAGTTGATGTTGGTGAAGGAGAACGATTAGTGGCAATCTCTTGGATAGACACTGGAATCAAGAACCTCTTTACACTTACTGCTGACGAAGCACAGCTTTCAGTGATTCCTAAGAATCTCCGTGAACGATACAAGACCAACAAGAGCAAACCTCCATTGGTTGAAATTGGTGGAATGAGAGCTAAAGATGGATGGGTGGCCATCAGTGAAACAGGACTCGTTTGTGTGACAACCTTAAAACCAGAAGTGCGCATTACCCGAAAATGTCTGGCACAGGTGCGTGCACGAGTTGCTGTGGCTGATCTAGCATTTACAACCATGGGAAAAGTGATTGCTGTTGCAAACGATGGTGAAATTCGCAGTGCTGTTCAGTTCTATCGAATCTCTTTGCCTGGAGGACCAGCTGATGTCACTTTTCCTTGCAGTTTGCGGCTGACACCAAGTGGTTCATTTTCAACAGAACTTCAAAGTTCAGGGGATGCAGAAATCGGTTTATTGCCTAAAAGAGTGCGCTATTCAGCAGACAACTATGGCCCAGGTTGTTTGGGAGCCATATGTTTCTCTCCTTGTTGCTGCTGTGCTGTTGGTGTTACTATGACAGGAGACCTGTGCATGTTCAAACTGCAACACCTATCAGACGGTGTAGATCATGGAGGGGTGCGGCTCAAACACAACTTGAAAGACCTGCTACAGTATTGTCTGCTGACTGGCTGGGAATGGTGGGATGTTCTAATGGCTGCTCATCTGGGAACACCACCAGACACCTTAGATGCAGTTTTGAGGCTGTTCATAGATGATTTCATCTTGCAAGATATGTCCCAACAGCTGATTTATGGTTCAAGGTTTAGAACAATTAAAGCCAGCTTGTTGAAGTGCACCAAAGATGGGGCAGGGCAGGCAGTTGACTGCTTTGTTCATCAACTTCTCATCGCAATAGCAGCAACCTTCAGGTCTCTTTTGAGATCTTCACACAATGCCACTGATCAGCTTGCAAAGATACCTACAACTGTAGATGTTGATGTGGACAAAGTGCTGCAAGCGCTGGATACAAAGGAATTGACTCTTGAAAGCACAACGGTGCTGTCTTTATTTCCCATCATTCAGTGGCTGGCTGATGTTGCCATGTTTGTGGTTAATGTTGTTGCATTCACATCTTATCACAATAAGGAATCAGCTCCTGGGGTCAGCCTGATGCGTGACACAGGCTTTCTGGCAACGTTACGTGAAATGCTTGTTCTAATTCGACTCTGGGGCCAGACCACTCCTGGAGTACTTCCTTCAATCACTCCATCAGCAGATAAAAATGAGTCACTGGCATTGTTGTTCAAGATCCTCACAAAAATCTGGCTTCTGAGCAGACAAGCCAACACAGATGAACCTGACGTTGCTGTCCTAGAAGACAGGTTGGCAGCTGAAGCAGCTCCTCTCACTCCAAATTTTTCATCTTTTCTTCAAAATATACAAGTGCCCAGTTTGAACAGAGGGGTGTCTGGCAAAGCAGCGAGTACAGGGCAAATTAAACCAAGCCAGTTTCAGTTTGGCACCCAACCCGTGTTGCAGAAAACACATCCCATTTTCCATCCATCATCCTCTGCCATTTTCCCCATGCCTGCTGATGGAATTCATACTGTGGATGTTGTGAGGAGGGTGTTCCTTGATAAATCTCCTTACAGCAAGTTAAAACAATGCACGAGGTGCAACTGTGTGTCATTAATAGATAATATAGAGGATCACATAATAGTCTTGTGA

Transcript

asel_s0312.g17.t2

CTACTTGAAGTACTTTACTATCAAATCTAAAATGGCGGCAGGAAGTTTTGTTTTGGTTCTTTGAAGTATGGATTTGATTTACAACGTTGTTTGGTCAACAACGAAGCCTTTAAAAAGCAACCTTTGTGGTAAAGTGGTTGTTGCCTGGTCTTGTCGGAATCTGGTTGCCTTTAGCACAGGATACAGGAAACTTGATAACTTGGATGGACAAAGTTCTAGTTCTATAAATGATGAAAATTCAAGGTCACCAGTTTGTAATGCAATAAATATTTTGGATCCAGATTCACCATGGGATGTCTGTTGTTTCAGTTCTGGTCACAAGGAATTGATTCAAAGTCTAACATGGGATGGCACTGGATCAAGACTTCTATCCTCTGATTTAGTTGGAATATGCAAGCTCTGGGCAATGAAGGATCACATGATTAATGACTGGGAATGCATTAGTACAGTTGATGTTGGTGAAGGAGAACGATTAGTGGCAATCTCTTGGATAGACACTGGAATCAAGAACCTCTTTACACTTACTGCTGACGAAGCACAGCTTTCAGTGATTCCTAAGAATCTCCGTGAACGATACAAGACCAACAAGAGCAAACCTCCATTGGTTGAAATTGGTGGAATGAGAGCTAAAGATGGATGGGTGGCCATCAGTGAAACAGGACTCGTTTGTGTGACAACCTTAAAACCAGAAGTGCGCATTACCCGAAAATGTCTGGCACAGGTGCGTGCACGAGTTGCTGTGGCTGATCTAGCATTTACAACCATGGGAAAAGTGATTGCTGTTGCAAACGATGGTGAAATTCGCAGTGCTGTTCAGTTCTATCGAATCTCTTTGCCTGGAGGACCAGCTGATGTCACTTTTCCTTGCAGTTTGCGGCTGACACCAAGTGGTTCATTTTCAACAGAACTTCAAAGTTCAGGGGATGCAGAAATCGGTTTATTGCCTAAAAGAGTGCGCTATTCAGCAGACAACTATGGCCCAGGTTGTTTGGGAGCCATATGTTTCTCTCCTTGTTGCTGCTGTGCTGTTGGTGTTACTATGACAGGAGACCTGTGCATGTTCAAACTGCAACACCTATCAGACGGTGTAGATCATGGAGGGGTGCGGCTCAAACACAACTTGAAAGACCTGCTACAGTATTGTCTGCTGACTGGCTGGGAATGGTGGGATGTTCTAATGGCTGCTCATCTGGGAACACCACCAGACACCTTAGATGCAGTTTTGAGGCTGTTCATAGATGATTTCATCTTGCAAGATATGTCCCAACAGCTGATTTATGGTTCAAGGTTTAGAACAATTAAAGCCAGCTTGTTGAAGTGCACCAAAGATGGGGCAGGGCAGGCAGTTGACTGCTTTGTTCATCAACTTCTCATCGCAATAGCAGCAACCTTCAGGTCTCTTTTGAGATCTTCACACAATGCCACTGATCAGCTTGCAAAGATACCTACAACTGTAGATGTTGATGTGGACAAAGTGCTGCAAGCGCTGGATACAAAGGAATTGACTCTTGAAAGCACAACGGTGCTGTCTTTATTTCCCATCATTCAGTGGCTGGCTGATGTTGCCATGTTTGTGGTTAATGTTGTTGCATTCACATCTTATCACAATAAGGAATCAGCTCCTGGGGTCAGCCTGATGCGTGACACAGGCTTTCTGGCAACGTTACGTGAAATGCTTGTTCTAATTCGACTCTGGGGCCAGACCACTCCTGGAGTACTTCCTTCAATCACTCCATCAGCAGATAAAAATGAGTCACTGGCATTGTTGTTCAAGATCCTCACAAAAATCTGGCTTCTGAGCAGACAAGCCAACACAGATGAACCTGACGTTGCTGTCCTAGAAGACAGGTTGGCAGCTGAAGCAGCTCCTCTCACTCCAAATTTTTCATCTTTTCTTCAAAATATACAAGTGCCCAGTTTGAACAGAGGGGTGTCTGGCAAAGCAGCGAGTACAGGGCAAATTAAACCAAGCCAGTTTCAGTTTGGCACCCAACCCGTGTTGCAGAAAACACATCCCATTTTCCATCCATCATCCTCTGCCATTTTCCCCATGCCTGCTGATGGAATTCATACTGTGGATGTTGTGAGGAGGGTGTTCCTTGATAAATCTCCTTACAGCAAGTTAAAACAATGCACGAGGTGCAACTGTGTGTCATTAATAGATAATATAGAGGATCACATAATAGTCTTGTGACTAGGGGTCGTGTTGTGTTCCCTGTGATGGGCAACCACATTATCGAGTTATGCCTACTTTGAAATAGGTTTTTCTTTCTTTTCTTTTTGTTTTGGTTAAGGTGCAACTGTGTGTCATTAATAGATAATATAGGGGATCACATAGCTGCCAAGGCCTGGGAACAAAGATGGGTTCGATCATGTGTGTGTGGGGGGAGCTGGAGAAGACTGCCATTCAaagaacaacaacaacaacaacaGAGTGGTACAGCTGTGGGGAGTGAGTAAGGTTGATCTCCACCAAAATGGTGATGACTGATCAGTTCAGTAAATAATAGTTACAAGA

Protein

Uniprot

Uniprot term	Description
Q08D69	Mediator of RNA polymerase II transcription subunit 16 OS=Xenopus tropicalis OX=8364 GN=med16 PE=2 SV=1
Q6PGF3	Mediator of RNA polymerase II transcription subunit 16 OS=Mus musculus OX=10090 GN=Med16 PE=1 SV=2
Q566H4	Mediator of RNA polymerase II transcription subunit 16 OS=Xenopus laevis OX=8355 GN=med16 PE=2 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF20718	Med16_bridge	Mediator complex subunit 16, central helical bridge	Domain	Interproscan
PF11635	Med16_N	Mediator complex subunit 16, N-terminal	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036322	Homologous_superfamily	WD40-repeat-containing domain superfamily	Interproscan
IPR048338	Family	Mediator complex, subunit Med16	Interproscan
IPR048616	Domain	Mediator of RNA polymerase II transcription subunit 16 , central helical bridge	Interproscan
IPR021665	Domain	Mediator complex, subunit Med16, N-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13224	THYROID HORMONE RECEPTOR-ASSOCIATED PROTEIN-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0016592	Cellular Component	mediator complex	Interproscan
GO:0045893	Biological Process	positive regulation of DNA-templated transcription	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K15159	MED16; mediator of RNA polymerase II transcription subunit 16	-	Transcription machinery	ko03021	deepkoala