Gene detail

Detailed information of asel_s0313.g40.t2 in Acropora selago

Genomic Location: sc0000313_pilon:453003...485997
NR annotation: XP_044172459.1, uncharacterized protein LOC122956826, partial [Acropora millepora]

Gene Structure

More details in Jbrowse

Sequence

CDS

asel_s0313.g40.t2

atggaaaacagggagcatattatgaaaccatctgaagaccaacattctgtgagtgagtctggagTGGCTGGTGGGTTttgtccacattcccaggaatacaaagagccaccacaggtctgtttcgagcagaaaaatgctggtgatcttccaaactccatagaaacatggagtgatgatcatctgccaattgatattatattattgactgtggagagctgtgattttttgagctgtttctccttgctggataaaccattcaaaagttacaagaaggagattggttatgtgtactttgggggcataggagataccagtgatcaggaaaagttaaaaattgcattggtgaagtgccataaaggagctgcaacaccaggaggctctttgacagcagttctgaatgcagttagagttttggggcctaaagctgcattttcagtgggaacttgcattagtttaggcttggagaatgtcaaaatgggagatgtagtcatatcctgtaaactaactgcagagggagtcagaactcctgtcagcccacttcttagccatcttattcaagatgcaccctatgggtgggttgcaccattgcaaaatccagatgaaatgaaagttaaagtacattgtgatggtgatatcctgagccagtcactgagagacaagtgtcgaagtgatgatgtttttgagcgatatcctggggcacttgcaattgagacagaaggcgaaggtctgtatgctgcagcctatgatgcaaatattgaatgggtgatagtgaaaggtgtggccagttattttcatcaaagccagtctgcaacttctgaatggatgtcttttgcaagcaccatggctgcctctatggtggccaagatgctaaaggatccaacagtgttccgggaatggccacactataaccaaggtgtacggtatggaacgtctgaagaccagcattccttgcggtgcgaaagagacgaaattatcaagttgctaatccaagcagccaagctcaggaaagaacaacaagaaaaagccgaaaagatgttgaccaaactagcccaaatctatgaggaatgtcatgatgtttcaaccgataatggcgtagaagccctcactgaatacctaagtacagtctataaggtagtcttcatcgcttttggaaggggttctgttatcatcattttggagtgcattgcattggaaagtcttgagcgtatatggaatgattatgtctcgggtcgtctcgatgaagttgctcaggaatacctagtgactaagaaaatgaaggaggagcttaagcttgagacaaattgcctgaagacaatcatacataaggaaaactacttgaactgcaagaaggctctcatggagcttccaagtacgtattcagGCTTTGCCATACCTCTGTGCCTTCCAAACAACTGCCAGTGGAATAAACAAACCGGTGAAGTCAGCCGCAGCAGCGAGCAAAGAAATAGTCTTAACGTGGTGGATGAAGCAATTGACCAGTTAAAAAGAATCAAAGGTCCCGTTTGTGTTGTGTCAATTGTCGGTCCTTACCGCAAAGGAAAATCGTACATTCTAAGTAAAGTCTTTGACCAAGGTGAGGTGTTCCCATTGGGTCGATACATGGACCCAGAGACAATGGGAATATGGATGTGGATTGTACCAGAGAAGATAAAGGAGTACATGGAGGAAAAACTGAAAGCATTGCAGGAACGCAACAACAATCTCACCAGAGAGGAATGCGATGCTCTGCTAAAACGCCTGAAAGAAGAGAGATTGGATCCGATCATTGCACTGCTGTATACTGAAGGCGGCTCCTCGGTCAGTTTTGCTGACATTGTTAGCGGTTACTCGGCTATTGAAGAAGACTTCAAGAACCAATCGAGAGGAGCAAAGGATGTTTGTGCTCAGGTGTTCTACGAGTTCCACCCGATGAAGCTGCTGCAGAAAAAACAGGAGGAAGACAGAAGACGCTTGGAAGAGCAGTTCAGAATTGACTTGGAAACTCAAAGAGTGCTTATGCAGGATATGATGACAGCCAATATGGATGAGCTGCGTTCAGAGAGGCAGGCTAATATAGACCAGAACCAAATTCTAGTGCACACTATGGAGGAGCAAAATAAACGCATACAAGAGGAACGAAAGACTCAACTACAAGAGATGAAGCTGCTGCAGGAAAAACAGGAGGAAGACAGAAGACGCTTGGAAGAGCTGCGTTCAGAGAACCAGGCGATTACTGACCAGAGCCAAACTCAAAAGGACACCATCACAAGCATGACCGAGGCTATGGAGAGGCAAAATGAACAGATGTCAGAGCTTCAGAATGAGATTACTGCACTAATGAATCCTCCTTCACCTCCCCCTGGTGGTGGATGCGTCATTCTCTAA

Transcript

asel_s0313.g40.t2

cctagaggggcggccaatttgcagtccacaaaaaatctcgattttctcgcgcctgcgaaaccaagttctcgtacctcgagaacgcaattaagaaacgggcaagaaaacccaataaatgctaatattcgtgaaaaatgacgattgcgtgacagcagagagacctctacaactccagctcaaactgtagcagcagctaattcacgtgaagaaaaaccaagttcaatcctagcaacatattgctgtcctagctgatctcacaacaatgcaccaccatctttgatacagatgattgaagtgaccttttgcagtgaaaatggaaaacagggagcatattatgaaaccatctgaagaccaacattctgtgagtgagtctggagTGGCTGGTGGGTTttgtccacattcccaggaatacaaagagccaccacaggtctgtttcgagcagaaaaatgctggtgatcttccaaactccatagaaacatggagtgatgatcatctgccaattgatattatattattgactgtggagagctgtgattttttgagctgtttctccttgctggataaaccattcaaaagttacaagaaggagattggttatgtgtactttgggggcataggagataccagtgatcaggaaaagttaaaaattgcattggtgaagtgccataaaggagctgcaacaccaggaggctctttgacagcagttctgaatgcagttagagttttggggcctaaagctgcattttcagtgggaacttgcattagtttaggcttggagaatgtcaaaatgggagatgtagtcatatcctgtaaactaactgcagagggagtcagaactcctgtcagcccacttcttagccatcttattcaagatgcaccctatgggtgggttgcaccattgcaaaatccagatgaaatgaaagttaaagtacattgtgatggtgatatcctgagccagtcactgagagacaagtgtcgaagtgatgatgtttttgagcgatatcctggggcacttgcaattgagacagaaggcgaaggtctgtatgctgcagcctatgatgcaaatattgaatgggtgatagtgaaaggtgtggccagttattttcatcaaagccagtctgcaacttctgaatggatgtcttttgcaagcaccatggctgcctctatggtggccaagatgctaaaggatccaacagtgttccgggaatggccacactataaccaaggtgtacggtatggaacgtctgaagaccagcattccttgcggtgcgaaagagacgaaattatcaagttgctaatccaagcagccaagctcaggaaagaacaacaagaaaaagccgaaaagatgttgaccaaactagcccaaatctatgaggaatgtcatgatgtttcaaccgataatggcgtagaagccctcactgaatacctaagtacagtctataaggtagtcttcatcgcttttggaaggggttctgttatcatcattttggagtgcattgcattggaaagtcttgagcgtatatggaatgattatgtctcgggtcgtctcgatgaagttgctcaggaatacctagtgactaagaaaatgaaggaggagcttaagcttgagacaaattgcctgaagacaatcatacataaggaaaactacttgaactgcaagaaggctctcatggagcttccaagtacgtattcagGCTTTGCCATACCTCTGTGCCTTCCAAACAACTGCCAGTGGAATAAACAAACCGGTGAAGTCAGCCGCAGCAGCGAGCAAAGAAATAGTCTTAACGTGGTGGATGAAGCAATTGACCAGTTAAAAAGAATCAAAGGTCCCGTTTGTGTTGTGTCAATTGTCGGTCCTTACCGCAAAGGAAAATCGTACATTCTAAGTAAAGTCTTTGACCAAGGTGAGGTGTTCCCATTGGGTCGATACATGGACCCAGAGACAATGGGAATATGGATGTGGATTGTACCAGAGAAGATAAAGGAGTACATGGAGGAAAAACTGAAAGCATTGCAGGAACGCAACAACAATCTCACCAGAGAGGAATGCGATGCTCTGCTAAAACGCCTGAAAGAAGAGAGATTGGATCCGATCATTGCACTGCTGTATACTGAAGGCGGCTCCTCGGTCAGTTTTGCTGACATTGTTAGCGGTTACTCGGCTATTGAAGAAGACTTCAAGAACCAATCGAGAGGAGCAAAGGATGTTTGTGCTCAGGTGTTCTACGAGTTCCACCCGATGAAGCTGCTGCAGAAAAAACAGGAGGAAGACAGAAGACGCTTGGAAGAGCAGTTCAGAATTGACTTGGAAACTCAAAGAGTGCTTATGCAGGATATGATGACAGCCAATATGGATGAGCTGCGTTCAGAGAGGCAGGCTAATATAGACCAGAACCAAATTCTAGTGCACACTATGGAGGAGCAAAATAAACGCATACAAGAGGAACGAAAGACTCAACTACAAGAGATGAAGCTGCTGCAGGAAAAACAGGAGGAAGACAGAAGACGCTTGGAAGAGCTGCGTTCAGAGAACCAGGCGATTACTGACCAGAGCCAAACTCAAAAGGACACCATCACAAGCATGACCGAGGCTATGGAGAGGCAAAATGAACAGATGTCAGAGCTTCAGAATGAGATTACTGCACTAATGAATCCTCCTTCACCTCCCCCTGGTGGTGGATGCGTCATTCTCTAAACTGGAAAATCTCAAACTTTGATGAATAAACCCCAAAAGTGGGG

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02263	GBP	Guanylate-binding protein, N-terminal domain	Domain	Interproscan
PF01048	PNP_UDP_1	Phosphorylase superfamily	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR035994	Homologous_superfamily	Nucleoside phosphorylase superfamily	Interproscan
IPR015894	Domain	Guanylate-binding protein, N-terminal	Interproscan
IPR000845	Domain	Nucleoside phosphorylase domain	Interproscan
IPR030386	Domain	GB1/RHD3-type guanine nucleotide-binding (G) domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10751	GUANYLATE BINDING PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003924	Molecular Function	GTPase activity	Interproscan
GO:0005525	Molecular Function	GTP binding	Interproscan
GO:0003824	Molecular Function	catalytic activity	Interproscan
GO:0009116	Biological Process	nucleoside metabolic process	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K20899	GBP1_3_4_7; guanylate-binding protein 1/3/4/7	-	NOD-like receptor signaling pathway	ko04621	deepkoala