Detailed information of asel_s0318.g30.t1 in Acropora selago

Genomic Location: sc0000318_pilon:331283...340035
NR annotation: XP_029204741.2, IQ and ubiquitin-like domain-containing protein [Acropora millepora]
Species Acropora selago · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q8NA54IQ motif and ubiquitin-like domain-containing protein OS=Homo sapiens OX=9606 GN=IQUB PE=1 SV=2
Q4R6T7IQ motif and ubiquitin-like domain-containing protein OS=Macaca fascicularis OX=9541 GN=IQUB PE=2 SV=2
Q45GW3IQ motif and ubiquitin-like domain-containing protein OS=Rattus norvegicus OX=10116 GN=Iqub PE=2 SV=2
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0004036 (this species only) · gene tree & orthology

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF11976
all species →		Rad60-SLDUbiquitin-2 like Rad60 SUMO-likeFamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR029071
all species →		Homologous_superfamilyUbiquitin-like domain superfamilyInterproscan
IPR022617
all species →		DomainRad60/SUMO-like domainInterproscan
IPR037695
all species →		FamilyIQ motif and ubiquitin-like domain-containing proteinInterproscan
IPR000626
all species →		DomainUbiquitin-like domainInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR21074
all species →		UNCHARACTERIZEDInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0001669
all species →		Cellular Componentacrosomal vesicleInterproscan
GO:0031514
all species →		Cellular Componentmotile ciliumInterproscan
GO:0060271
all species →		Biological Processcilium assemblyInterproscan
GO:0005515
all species →		Molecular Functionprotein bindingInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K24838IQUB; IQ and ubiquitin-like domain-containing protein-Domain-containing proteins not elsewhere classifiedko04990deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of asel_s0318.g30.t1 across 24 RNA-seq samples of Acropora selago. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

24Samples
23TPM > 0
1Conditions
79.4Max TPM
43.9Mean TPM

By condition

ConditionSamplesTPM > 0 Mean TPMMax TPMMean, relative to max
coral larvae 24 23 43.91 79.43

Per sample · hover a bar for the full sample record

Show the sample table (24 samples)
SRA runConditionTissueDevelopmental stage TreatmentStudyTPM
SRR14308021 coral larvae coral larvae not recorded not recorded SRP315987 79.43
SRR14308027 coral larvae coral larvae not recorded not recorded SRP315987 74.12
SRR14308007 coral larvae coral larvae not recorded not recorded SRP315987 71.14
SRR14308014 coral larvae coral larvae not recorded not recorded SRP315987 61.08
SRR14308017 coral larvae coral larvae not recorded not recorded SRP315987 53.76
SRR14308015 coral larvae coral larvae not recorded not recorded SRP315987 48.81
SRR14308023 coral larvae coral larvae not recorded not recorded SRP315987 48.12
SRR14308013 coral larvae coral larvae not recorded not recorded SRP315987 47.68
SRR14308004 coral larvae coral larvae not recorded not recorded SRP315987 45.46
SRR14308016 coral larvae coral larvae not recorded not recorded SRP315987 41.84
SRR14308008 coral larvae coral larvae not recorded not recorded SRP315987 41.64
SRR14308026 coral larvae coral larvae not recorded not recorded SRP315987 41.11
SRR14308022 coral larvae coral larvae not recorded not recorded SRP315987 40.77
SRR14308006 coral larvae coral larvae not recorded not recorded SRP315987 39.94
SRR14308010 coral larvae coral larvae not recorded not recorded SRP315987 39.24
SRR14308012 coral larvae coral larvae not recorded not recorded SRP315987 38.11
SRR14308025 coral larvae coral larvae not recorded not recorded SRP315987 37.24
SRR14308024 coral larvae coral larvae not recorded not recorded SRP315987 36.86
SRR14308020 coral larvae coral larvae not recorded not recorded SRP315987 35.35
SRR14308009 coral larvae coral larvae not recorded not recorded SRP315987 34.31
SRR14308019 coral larvae coral larvae not recorded not recorded SRP315987 34.25
SRR14308011 coral larvae coral larvae not recorded not recorded SRP315987 32.71
SRR14308018 coral larvae coral larvae not recorded not recorded SRP315987 30.92
SRR14308005 coral larvae coral larvae not recorded not recorded SRP315987 0.00

Source: CnidoSite RNA-seq expression matrices (ASELA_TPM, StringTie quantification over 24 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.

Co-expression network

Genes whose expression across the transcriptome samples of Acropora selago tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.

DirectionPartnersMost correlated partnerPCC
Positively correlated26asel_s0015.g33.t10.942999011546446
Negatively correlated7asel_s0148.g21.t1-0.715947725249257

Open this gene in Network Analysis → The network opens with the gene already entered and both directions selected. There you can add up to 9 more genes, switch between the positive and negative network, and export the edge list.

Single-cell expression

Whether this gene can be visualised in the single-cell atlases of Acropora selago, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.

No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.

Epigenetic marks

Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.

DNA methylation (bisulphite samples)

SampleMethylation profile
Coral_Fragment_Parentopen
Larval_Pool_Offspringopen

The DNA Methylation page locates this gene by scanning the bisulphite table, which holds one row per cytosine. For the largest datasets that scan takes a while to return; it does not mean the link is broken.

What you can do with this gene

Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.

AnalysisWhat it doesStatus
Primer designDesign PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed.template foundopen →
BLASTSearch this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start.template foundopen →
Expression heatmapDraw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it.readyopen →
Gene family / orthogroupLook this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue.open →
Gene set analysisStart a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it.open →
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