Gene detail

Detailed information of asel_s0331.g17.t1 in Acropora selago

Genomic Location: sc0000331_pilon:314126...328553
NR annotation: XP_044174789.1, very-long-chain 3-oxoacyl-CoA reductase-B-like isoform X1 [Acropora millepora]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

asel_s0331.g17.t1

GCGTGACACGCAACATTTCATTCGTTTGTGTAACGCAGGATAGGTATGGAGTGGAACCTTCTTTCTTACGCTGGGGCCGCTTTTCTTGGCTATTACTCTTTCACCTTCCTTCTCCAAGTGATCCATGGAGTAAGGGCCTTTGTTCTTCCTACTATTGGCATAAAAAAGAATTTGAAGAAGCTTGGAGAATGGGCAGCTTGCAAGACAAGGCTTCAAGATAGTTCTCATCAGTCGCACTCTGGAAAAGTTAGAAACTCTAGCTGTGGAGCTGTTAGTGACATATGGCACTGAGACTAAGGTCATCAGTATGGATTTCTCAGGTGGAGTAGAGATATATGATGGTTTGGAGGAAAAGCTTGCCGGTTTAAATATTGGCATCTTAGTTAATAATGTGGGAGTCTCACATTACCCAGAGTTTTTCACGCACATGAAGAGAGAGGATGCTTGGAAGATGATAAACGTAAACATCCTCTCTGTTATCATGATGACTCATATTATCCTTCCTGAGATGGCTGCAAAAGGAAAAGGTCTCATAATAAATGTTGCGTCAGCCGCAGGACTGAATCCTACACCACTGCTTTCAATGTACTCTGGAACCAAGGTGTTTGTAGATTTCTTCAGTAGATGCATCAATACGGAATATTCACCTAAAGGAGTCATTTGTCAGTGTGTGTTACCTTACTATGTAGCAACCAAGATGAGTCGAATCAGAAAACCAAGTGTGTTTGCTCCAAGCCCTACCTCTTATGTCCAAGAGGCCTTGGGTACAGTTGGTGTTGAATCTCGTACTGTGGGCTGCTGGAGTCATGCCCTTCAGAACTGGTTTATCTCCCGTATTCCTGATCGGCTGAGAGAAACCATCACATGGAACATGAATACAGCAGTGCGGAGAGCTGCCCTCAAGCGACTTGCACAGAAAAAAGACTGATAAGTGATGCATGAGCAGCTCAAATCAGGTTGTGCCATGAAGTCGGCAATAGGTTATAATTATGACAAAGTTGGGAAAGAGAAGAGAATCCAACATTATAGTGGGCCATCAATGCATGTGTGGTCAGTTTTCTATCTATCAACTGTTAAAATACAGGACTGGTAATTAGAGTATGATTAATTTTTGATGAACCAAATTATTTTGAGTGGTTTTACAAAACAGCGTGCAGCATTTGAGTGCATTATTTCTTTAATATTGTATAATTTTTTTCTACAGTGAAGTATAATTTAGACAGTTGTTCATGATACAATTGTAATGATTGATTGGCACTTCAATTAATTATCTTTACTTAAGAGAAAGGTGATTGTGGGTTTTGGAGCTACAATTTTTTAGTTTTGGAAAAATTTTAAATTTAAGATTCCATGCAATATTTTATTATAAAAAATAAAATAGCAAGCATTGTACACTTAATGTAGAGTATCTCATTCTTAAATTTAGGTTTGGCTTCTCACTGATTCCTTGAATCTTCATCTGTCCCTCAGCGATTCGTGTGACGTGCAACTCACTTAGTACAGTAAGCACATTTCTGTACTCTACAAAGTGTCCGACTTTAAATCTTTGAATTGACACTCCTGAAGTAGTAGGGTTGGCATTTAGGATCTAATGGATATACACAGAAACTAATAAAAAACAAATTAAATTAACCACCCTATGTCAGATTTGAGGCCTATAAGTAGTGCTTGCTGCTTGAATATGTATAAAGACCCCttttccaataactgtcagaaaacgaaaactaaggtaattactctgaccaatcggtggtgaaccaatcagaattcctaggaattactacctgtaacttgtccaaagtccaggaaaaatcatatgtccaaggtttggtcggttttggttttgcttcgcatttgcttctcgctagatttttcagccaatctttcaacatacatagcaatgccaatcacataatttctttcaacagtcattggaaaacaactctaATCTCAATTTGTTAGACGTACTTTAATCTGTAAAAATTAATGTTTGACTACAGGGACTTGTGGAGCGTGTTTTATCCATGAGAAGGTCATTGTTGTTTCTTGGTTAATTATTGCTTTTGTGATTGAGTCCTTGGATGAAGACAAATACTTACTTTTAATGCCTTAAATATAGCAAGCGACACCACCAGTGACTAACATGAGTAATTCTTTGATCTGTTCAACAGAATTGGGTTCTATCTCATGTGCTTCCTGTCAGCTTAAGGAATATACTTTTGTGGTATTTCCAGATGAAAAGACGTAGTATTTATCTAGCACAGCGTGCAAAAAAGGAATAAAATTAATCAAAAATA

Protein

Uniprot

Uniprot term	Description
O57314	Very-long-chain 3-oxoacyl-CoA reductase OS=Anas platyrhynchos OX=8839 GN=HSD17B12 PE=2 SV=1
Q4R5G7	Very-long-chain 3-oxoacyl-CoA reductase OS=Macaca fascicularis OX=9541 GN=HSD17B12 PE=2 SV=1
Q53GQ0	Very-long-chain 3-oxoacyl-CoA reductase OS=Homo sapiens OX=9606 GN=HSD17B12 PE=1 SV=2

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00106	adh_short	short chain dehydrogenase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036291	Homologous_superfamily	NAD(P)-binding domain superfamily	Interproscan
IPR051019	Family	VLCFA Elongation and Steroid Dehydrogenase	Interproscan
IPR002347	Family	Short-chain dehydrogenase/reductase SDR	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR43899	RH59310P	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005783	Cellular Component	endoplasmic reticulum	Interproscan
GO:0016491	Molecular Function	oxidoreductase activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K10251	HSD17B12, KAR, IFA38; 17beta-estradiol 17-dehydrogenase / very-long-chain 3-oxoacyl-CoA reductase	EC:1.1.1.62 EC:1.1.1.330	Lipid biosynthesis proteins	ko01004	deepkoala