Detailed information of asel_s0331.g2.t1 in Acropora selago

Genomic Location: sc0000331_pilon:25740...57425
NR annotation: XP_029208008.2, kinesin-like protein KIF21B [Acropora millepora]
Species Acropora selago · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q9QXL1Kinesin-like protein KIF21B OS=Mus musculus OX=10090 GN=Kif21b PE=1 SV=2
O75037Kinesin-like protein KIF21B OS=Homo sapiens OX=9606 GN=KIF21B PE=1 SV=2
F1M5N7Kinesin-like protein KIF21B OS=Rattus norvegicus OX=10116 GN=Kif21b PE=1 SV=2
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0002474 (this species only)
Ubiquitin familyUBD|Other|Beta-prp · all ubiquitin genes in this species
Ubiquitin familyE3|E3 adaptor Cullin RING|CDC20 · all ubiquitin genes in this species
Ubiquitin familyE3|E3 adaptor Cullin RING|DWD · all ubiquitin genes in this species

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00225
all species →
KinesinKinesin motor domainDomainInterproscan
PF00400
all species →
WD40WD domain, G-beta repeatRepeatInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR001752
all species →
DomainKinesin motor domainInterproscan
IPR001680
all species →
RepeatWD40 repeatInterproscan
IPR027640
all species →
FamilyKinesin-like proteinInterproscan
IPR036961
all species →
Homologous_superfamilyKinesin motor domain superfamilyInterproscan
IPR019775
all species →
Conserved_siteWD40 repeat, conserved siteInterproscan
IPR019821
all species →
Conserved_siteKinesin motor domain, conserved siteInterproscan
IPR015943
all species →
Homologous_superfamilyWD40/YVTN repeat-like-containing domain superfamilyInterproscan
IPR020472
all species →
RepeatG-protein beta WD-40 repeatInterproscan
IPR027417
all species →
Homologous_superfamilyP-loop containing nucleoside triphosphate hydrolaseInterproscan
IPR036322
all species →
Homologous_superfamilyWD40-repeat-containing domain superfamilyInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR47969
all species →
CHROMOSOME-ASSOCIATED KINESIN KIF4A-RELATEDInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0003777
all species →
Molecular Functionmicrotubule motor activityInterproscan
GO:0005524
all species →
Molecular FunctionATP bindingInterproscan
GO:0007018
all species →
Biological Processmicrotubule-based movementInterproscan
GO:0008017
all species →
Molecular Functionmicrotubule bindingInterproscan
GO:0005515
all species →
Molecular Functionprotein bindingInterproscan
GO:0005875
all species →
Cellular Componentmicrotubule associated complexInterproscan
GO:0007052
all species →
Biological Processmitotic spindle organizationInterproscan
GO:0051231
all species →
Biological Processspindle elongationInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K24185KIF21; kinesin family member 21-Cytoskeleton proteinsko04812deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of asel_s0331.g2.t1 across 24 RNA-seq samples of Acropora selago. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

24Samples
23TPM > 0
1Conditions
29.3Max TPM
17.0Mean TPM

By condition

ConditionSamplesTPM > 0 Mean TPMMax TPMMean, relative to max
coral larvae 24 23 16.97 29.35

Per sample · hover a bar for the full sample record · show / hide the sample table

Source: CnidoSite RNA-seq expression matrices (ASELA_TPM, StringTie quantification over 24 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.

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