Gene detail

Detailed information of asel_s0352.g22.t1 in Acropora selago

Genomic Location: sc0000352_pilon:239307...250635
NR annotation: XP_029180581.2, uncharacterized protein LOC114948177 [Acropora millepora]

Gene Structure

More details in Jbrowse

Sequence

CDS

asel_s0352.g22.t1

ATGCCGTCAAAGACAATCCTTTGCATAGGAAGCCCCGAAAATCTTCACATTCAAGAAGTCCAGAAACACGCCAAAGAACTGGACAAGGAAGCCAAAATGGTAATCTTTAACCTCGAACGGGAGAGTGATGTCATCATAGAAATCACTACAGACGGAAATGAGCCTTCCAATAACTGTACTTTCATCATAAATGGAGAGCGAATATTGGCTAAGGAGATCACATCAGTATGGTTTTACCCAAGGCCTTTGGGGCCTCCGGAACGGGAAGACGTACAAGGACGAATTGGAAGAGGCTTCGCTGAGAAGGAATGGCAATCTGTATTTCATTCACTGGTACCTTTTCTGTCTCATGCAAGGTGGTTGAATCCATTGGGACCACTTCAGATATCAAAACCCGATCAGTTGAAACTTGCGCAGGAAGTTGGGTTGACTGTGCCAAAGACCACAATTACCAACCACGCAGCCGCGATTGAGAAACTGTTCGATGATGGGCGTGTGATTTTCAAAGCTCTCAGCCCACCTTTCACGTCAACCAATGACATGGTTTTCACTAGAGAAATCACAAGAGAGTTTCCGTCATATTTCCAAGCGAGTATCGCACAATGTCCTGCCATTTATCAGGAGTTAGTTGAAAGGAAGTCAGATCTACGTATCACCGTGGTTGGACGCGAGGTGTTTGTCGTTCGCATTGCCTCCCAAACGCTTGAAGAAGAGAAAGACCGCTTGGATTGGAGACGAAAACAGGACAAATATGATATTTTTAGTCAAGCTGAGATATCTGATCAATTGAAAGACCGTTTGCTGGAATTCCACAAGAGAGCTGGTCTGGTTTATGGTGCCTACGATTTCTTGGAATGTGAAACTGACACAATTTTTCTGGAGTGCAACGCGGCTGGAGCTTGGCTCTGGTTGGAGAGAGCTGTTGGCATTCAGGTCTCAGAGCAAATTGCTCGACTTCGCCAAATGGGCATGGGAATTGAATTCCGCAAATTTATCGTTGGTGGCATTCTCTGTGGGTTGCTGCTCTTTAAGGAGGTTACCTGCCAAGGAACAAAGAACAAGAATTATGGGAACACAAACTACCATTTCAATAAATCCCAGCATTTACTAGACAAACGTACCACTGATGTTTCAGATGCACAAGCCATTTACGATTATTCCCAGGAATGGGTCAAATCCAAGACTACCTACTATGGTCAATATCCGGGCGGTGGTGCATGCACACTAGATCCACTCACCCCAATGGCCTCGCAAAAAGGCTGGATCCGGGTAGCCGCTGGACAATATGACTTTCTCAAATCTCTTGGCTGTGGAATGTGCGTGGAAATACGGGGGTCTGGAAAGGGCAGTGGTTTGACACCTGTCACAGGAGTCAAGAAAGCCATTGTTCACGACTTATGTGGCGCATGTGAAAAAGGGGGCTACGATCTGTATATCGACGGAGACGGCAAATGGGAAATTGAAACCAAAGCAATCGACTGTCCCACGATTTCTGGTCCAGATGGCGAGATAACTTTCCGGTTTGTCGAAAAAAATCTGTGGAGTTTTAAACTTCAAGCTCGGAATCACAAAGTTCCTGTAGCTGGCATAGAGGTAGCTAAAAATGGAAGGTACCATTGCCTAAAGAGAACTGGCGACAACTATTTTACTGGTGACGGCCTTGGGAAAATAGAAATTCCACTGAAAGTGCGATTAACAGCGGTAACAGGGGAACAAAAGGAAACAGTAATTCCATTCATGTTAACTTCTGATATTCCGAGTGGTGTTCAGTTTTCTGGTTTCAAAGCAGGACCGGGTCCTTCAAGTATAATGTGCGCTGGCCAGGGTAAAAAATCACCATATCCCCCAGACGGAATACCTATCGGCGAAGCTGCTGGACCGACACCACGTCCACCAAGCCCTCCTGGGTCACCACCACCTCCCTCTACTCCACCATCGCCCCCTCCACTTCCTCCCTTGCCACCGACTACAGGAGGTGGAGGAGAAGGATTAACAGCTCCAGGGACCGCTAGTGGAGGCGGTGGAGCGGGCGCAGATGGTTTCTGTAAGGATAAGAAAGGTGTGTTCCCAGACCCCAAGGACTGCGCTGGAATCATCACTTGCAACAACAACAAGGCGCACAAACAGTCATGCGCACACCCCCTGCTTCTCAACGCCAAAAGTATGAACTGCGATCTACCATACAGAGTAGACTGTGGATCTAGACCCATAAGAAACAGCGATGCTTCAGGGAAGTGGTCTTTCGTAACGACTTTAAGGTCTTTCACAAATGCCAAGAAAAAGGAAATGATACTCTCATAA

Transcript

asel_s0352.g22.t1

CGTACATTAAAATCCAAATCTCGGACATAAAACCAGTCATGCCGTCAAAGACAATCCTTTGCATAGGAAGCCCCGAAAATCTTCACATTCAAGAAGTCCAGAAACACGCCAAAGAACTGGACAAGGAAGCCAAAATGGTAATCTTTAACCTCGAACGGGAGAGTGATGTCATCATAGAAATCACTACAGACGGAAATGAGCCTTCCAATAACTGTACTTTCATCATAAATGGAGAGCGAATATTGGCTAAGGAGATCACATCAGTATGGTTTTACCCAAGGCCTTTGGGGCCTCCGGAACGGGAAGACGTACAAGGACGAATTGGAAGAGGCTTCGCTGAGAAGGAATGGCAATCTGTATTTCATTCACTGGTACCTTTTCTGTCTCATGCAAGGTGGTTGAATCCATTGGGACCACTTCAGATATCAAAACCCGATCAGTTGAAACTTGCGCAGGAAGTTGGGTTGACTGTGCCAAAGACCACAATTACCAACCACGCAGCCGCGATTGAGAAACTGTTCGATGATGGGCGTGTGATTTTCAAAGCTCTCAGCCCACCTTTCACGTCAACCAATGACATGGTTTTCACTAGAGAAATCACAAGAGAGTTTCCGTCATATTTCCAAGCGAGTATCGCACAATGTCCTGCCATTTATCAGGAGTTAGTTGAAAGGAAGTCAGATCTACGTATCACCGTGGTTGGACGCGAGGTGTTTGTCGTTCGCATTGCCTCCCAAACGCTTGAAGAAGAGAAAGACCGCTTGGATTGGAGACGAAAACAGGACAAATATGATATTTTTAGTCAAGCTGAGATATCTGATCAATTGAAAGACCGTTTGCTGGAATTCCACAAGAGAGCTGGTCTGGTTTATGGTGCCTACGATTTCTTGGAATGTGAAACTGACACAATTTTTCTGGAGTGCAACGCGGCTGGAGCTTGGCTCTGGTTGGAGAGAGCTGTTGGCATTCAGGTCTCAGAGCAAATTGCTCGACTTCGCCAAATGGGCATGGGAATTGAATTCCGCAAATTTATCGTTGGTGGCATTCTCTGTGGGTTGCTGCTCTTTAAGGAGGTTACCTGCCAAGGAACAAAGAACAAGAATTATGGGAACACAAACTACCATTTCAATAAATCCCAGCATTTACTAGACAAACGTACCACTGATGTTTCAGATGCACAAGCCATTTACGATTATTCCCAGGAATGGGTCAAATCCAAGACTACCTACTATGGTCAATATCCGGGCGGTGGTGCATGCACACTAGATCCACTCACCCCAATGGCCTCGCAAAAAGGCTGGATCCGGGTAGCCGCTGGACAATATGACTTTCTCAAATCTCTTGGCTGTGGAATGTGCGTGGAAATACGGGGGTCTGGAAAGGGCAGTGGTTTGACACCTGTCACAGGAGTCAAGAAAGCCATTGTTCACGACTTATGTGGCGCATGTGAAAAAGGGGGCTACGATCTGTATATCGACGGAGACGGCAAATGGGAAATTGAAACCAAAGCAATCGACTGTCCCACGATTTCTGGTCCAGATGGCGAGATAACTTTCCGGTTTGTCGAAAAAAATCTGTGGAGTTTTAAACTTCAAGCTCGGAATCACAAAGTTCCTGTAGCTGGCATAGAGGTAGCTAAAAATGGAAGGTACCATTGCCTAAAGAGAACTGGCGACAACTATTTTACTGGTGACGGCCTTGGGAAAATAGAAATTCCACTGAAAGTGCGATTAACAGCGGTAACAGGGGAACAAAAGGAAACAGTAATTCCATTCATGTTAACTTCTGATATTCCGAGTGGTGTTCAGTTTTCTGGTTTCAAAGCAGGACCGGGTCCTTCAAGTATAATGTGCGCTGGCCAGGGTAAAAAATCACCATATCCCCCAGACGGAATACCTATCGGCGAAGCTGCTGGACCGACACCACGTCCACCAAGCCCTCCTGGGTCACCACCACCTCCCTCTACTCCACCATCGCCCCCTCCACTTCCTCCCTTGCCACCGACTACAGGAGGTGGAGGAGAAGGATTAACAGCTCCAGGGACCGCTAGTGGAGGCGGTGGAGCGGGCGCAGATGGTTTCTGTAAGGATAAGAAAGGTGTGTTCCCAGACCCCAAGGACTGCGCTGGAATCATCACTTGCAACAACAACAAGGCGCACAAACAGTCATGCGCACACCCCCTGCTTCTCAACGCCAAAAGTATGAACTGCGATCTACCATACAGAGTAGACTGTGGATCTAGACCCATAAGAAACAGCGATGCTTCAGGGAAGTGGTCTTTCGTAACGACTTTAAGGTCTTTCACAAATGCCAAGAAAAAGGAAATGATACTCTCATAACAATGCATGCGATCATCAAAACTGTTTGATCATTCCAAAAAACAGTTCGAAGACGAAGGCACGAAATCTGACGGTGCTATGCCATGGGA

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF08443	RimK	RimK-like ATP-grasp domain	Domain	Interproscan
PF01607	CBM_14	Chitin binding Peritrophin-A domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036749	Homologous_superfamily	Expansin, cellulose-binding-like domain superfamily	Interproscan
IPR036508	Homologous_superfamily	Chitin binding domain superfamily	Interproscan
IPR002557	Domain	Chitin binding domain	Interproscan
IPR013651	Domain	ATP-grasp fold, RimK-type	Interproscan
IPR036908	Homologous_superfamily	RlpA-like domain superfamily	Interproscan
IPR051477	Family	Plant Cell Wall Expansin	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR31836	EXPANSIN-LIKE PROTEIN 2	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0008061	Molecular Function	chitin binding	Interproscan
GO:0005576	Cellular Component	extracellular region	Interproscan