Gene detail

Detailed information of asel_s0366.g4.t1 in Acropora selago

Genomic Location: sc0000366_pilon:67877...104425
NR annotation: XP_020612223.1, acyl-coenzyme A synthetase ACSM3, mitochondrial-like isoform X1 [Orbicella faveolata]
Species Acropora selago · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

asel_s0366.g4.t1

GGTCTAAAACATGTACACAGACGAATCAAGAAGGACTGGAAGGAAGCAAATCATTTCTCATTCTGCCAACCAAGTGAGCGGCAAGGTTTATTAAATGACAATGGATGGCGACTCAATCTGGGGATCACGGGATTATCAAGTTCCGCAATACTTCAACTTTGCTGACGTCATTGACGACTGGGCAGAAAAGGAAAAGCACGGTGACAAGGTACACTACAATCCTGCTCTATGGTGGAGCGATGGTGATGGACAAGAAGTGAAGTGGAGCTTCCAGGATCTTGCCTCAATTTCAAAAAAGGCAGCAAATGTGCTCTACACAGTCGCCAACGTCACATCAGGAGACAGAGTGATGGTTTTGGTACCCAGAATTCCAGAGTATTGGTTGATGCAAGTTGCTTGTTTTAGAACAGGGGCAATTTTAGTTCCTGTTCCAACTAATATTGGCTGTGCAGAGCTACAAAGAAGAATTTTCTTAATCAAACCTACGTGTTTCGTGTGTAATGGCGTCATTGAAAACAATTTACTGAATACTATTGATGAGTTTTCTAGTTCATCTTCCGCTGTCAAGTGTAGGTTGATGTTCAATAGAATGAAAAATAGCAACAGAAACAGTTGGCTCTCTTTCGATGAGCTACTTCAACAAGCCTCCAGCGATTATCAGTCGGTCGATTCGTTAAGTTCTGCACCAATTGCAATAGTCTTCACAAGTGGAACAACAGGAAATGCAAAAATGGTGGAACATTCACATGGTTCTTGGGGTCTTCAAAACCGTACAGGCATGGATAGACTCGGCATGGGAATCGTCGAGTCCGATCTTGTTTGGTCGCAGAGTGGAACAGGTTGGGTCTTACTTCTGGCGATGGCCGTGTCCTCGTGGTCTGTTGGGGCAGGAGTCTTCGCTCATTACAGAAATCTCAACGGCAGAGAAGCTTTAGAAATTCTTCTCGAGTTTCCCATTACTTTCACTTTCTTCCTGCCTAGTATCTACATTAACGCGGTGAAAGAGGACCTCAGAAGGTTTCATTTCTCTAAGTTAAGTAGTTGCATGACAACTGGTGAGCCGATGGATAAAGAAGTGATGCTCAAATGGAAAGAAGCAACGGGAATTGACATTAGGAGTATTTATGGACAGACAGAAGCGGGTGCATTATGCTGTACTCCAAGGAACGGTGAAGTTCGAATAGGATCTGTTGGACATCCATTTCCAAGCGTAGATCTGGTGATCACTGACGATAATAACCAGGTTATGTCTCCAGGTCACCATGGAAGAGTTATGGTTAGAGTAAAGCCGTACCGTCCTGTGCCATTCTTTACTCATTATGTGGATGATCCTCATAGAACAGCGGCTTGCTTTTCTGGAGACTTTTACATAACAGGTGATGTTGGCTTCAAAGACGAGGACGGTTATTTCTGGATTTTAGGACGAACTGATGACATTATCTTTGTAAATGGGCTTAATATAAATCCACATGACGTCGAACACTGCCTTTCAGGACATCCAGCGGTTTTGGAATGTGCTGTGGTCAGCAGTCCTAACACAACAGGACAGGAGTGCGCGAAAGCTTTTGTCGTGTTATCAAGTGAATTTCAAAATAAAGAAGAGAATGAAGTGATAAGCGAATTGCAAGATCACATGATGAAGAATGCAGGAGCCTGGATGAAACCTGCAAAGGTGGAGTTCGTGGACAGCCTTCCCCATACCCTTACaggaaagatcaagcgaaaggaactgaaagaaaaggaatggaaGTCATTTAAACCAAAACGATATTAATCAATGGTCCATCTGATAGGAACAACAGAGACCTTACTAATTATAAATGTTAAGAACACCTTTATTACCTTTATCATGTTTAAAAATAAGAAAAATGAGAATCTTTATCATGTTTAAAAATAAGAACGTTTTCATCATTGTAGCACTATTCTATACTGTTCAATCAATTGCATGCTTATCTGCTAAATTAATTTACTATATACTTATTTTTTCCACTTTTCTTTAAATTAAAGGGTTTTTCTTAAAGTAATGAAAACAGTCTTCCCTATAGAGTCTGTAAACTCAGGCAATGTATATCGGACGAGACCCCACCCATCCTTCCCAGAGGGTAGAAATTATATTCGTAGTTTTAATTTATAGTCCGACTAAAAGTGGGGGAATAGCATTTTTTTAACATCTAAAATTCGGTGGAGTTCTCCCCTGGACTATTTGACTATTACATGGTCAGAAAACCATGCTTCTTATATGTCGTTTATCTAGAAGTTAAAACGCAGGCAACTATTAGTTAGATTGAAATATTAATTATTAATAGATCGGTAAcaagagattatcaaggtaagagagtgaatatccctcatatctgccttctaaccaaggtaatccctcttaaattatttttagacatggtacccagaacttctgcgaatattactcgcgcgatgtgtgaacaggcaaagcgactttctcgaagctacctgagacgaaatggtggGGACGTCATTGCGTATGCTTTCATTTTGTCTCATAGTAGAAGATATTTTCTCCCCTCTCAGCCGTCGTTTTGTTCGGCCGGGCTTTCGTTGGTTTTGCGTTCCTTTTGCTGTTCATTTTTTGTCCGTTTATTCGGTTTTAGGTAGTTTAATTAAGCAAACTTACCGGCACGGCAATGAGTACAATGACTGTGTAAAGTGTGCGTTATACTTCTTTCATCATTTCTTTTCCGTTACGTTCTTTACAAAATGTCACAAAATAACAACCCTAAAAAAAGCTTCAAAACTACATTCTGCATATTCAAGGGAACGTGAACTATACGACGGTTGATTCTTAATTATTTTTTTTTTAATTCTGACGCTCTTACATTTTTTGTTTAAGGGATACTTCTGAAAGTATAGACAGACTGGTTGAATCTAAATTCTTCGGCAAGATTCGTAGTTTGAATGTTAAATCGTTGCATTTTGCTGCTTGGGCAGCGAGTGTCTGCCTGCACTTTCGACCATCTGTTTGTTCGGTTGCCTAACTTGTGTTTTTGCGGGTTTTTTTTTTTTGCTTTGCACTCGTTTGTCGAATCATTTGTCTGCCGTTCATTCAGTTGTTATTATTTGTGAATGGGACATCCGTCTCTCATTTAAACTCCTATTAAAGTTTCGAAATGCATTAAACATACGGACAACCGAAGCTCCCTTTCTCAGTTGTAGATGAATCAAAATATCAAAAAAGAAATCCTCGCAATGTTGGAGGTTTTCATTTCCTTTGAAATGAAACGAGACGACATAGACAGAtcctccacgaaaacatccacgcaacgcgcgagtaacgaatcgaaagaactgggtacaatgtctaaaaagaacataggacggattacctttagtatagtacctatatggaggattcgctctcttacgaatctcttgGTCGGTAACTATAAATTAATAATTAATTTAGTAAAGGACCCTTTCTGTAAAAGTGATTTGTAACAGAATTGTTGCCAGTCTCTCCAAGAGGAGGATTTAACGAGAGCACATTGAATCAACCGAGGGGTCGGAACTTTTTGCGTCCTTCCCGGCATACTCCCAAATTTTCACAGTGATATTATTTCTCCCTCGTCTCTCATGCCCTCTGAGTAAAGGAATAAGAAATAGATAGTAATAAATATACAGAGTCCTAATGCTATAAAAATATTCATATTCAATCGCACCTTACAATAAAATGGAATTTAAAAG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P0C7M7	Acyl-coenzyme A synthetase ACSM4, mitochondrial OS=Homo sapiens OX=9606 GN=ACSM4 PE=1 SV=1
Q3UNX5	Acyl-coenzyme A synthetase ACSM3, mitochondrial OS=Mus musculus OX=10090 GN=Acsm3 PE=1 SV=2
Q6SKG1	Acyl-coenzyme A synthetase ACSM3, mitochondrial OS=Rattus norvegicus OX=10116 GN=Acsm3 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001394 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13193 all species →	AMP-binding_C	AMP-binding enzyme C-terminal domain	Domain	Interproscan
PF00501 all species →	AMP-binding	AMP-binding enzyme	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR045851 all species →	Homologous_superfamily	AMP-binding enzyme, C-terminal domain superfamily	Interproscan
IPR025110 all species →	Domain	AMP-binding enzyme, C-terminal domain	Interproscan
IPR042099 all species →	Homologous_superfamily	ANL, N-terminal domain	Interproscan
IPR051087 all species →	Family	Mitochondrial Acyl-CoA Synthetase Medium-Chain	Interproscan
IPR000873 all species →	Domain	AMP-dependent synthetase/ligase domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR43605 all species →	ACYL-COENZYME A SYNTHETASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004321 all species →	Molecular Function	fatty-acyl-CoA synthase activity	Interproscan
GO:0005759 all species →	Cellular Component	mitochondrial matrix	Interproscan
GO:0006633 all species →	Biological Process	fatty acid biosynthetic process	Interproscan
GO:0006637 all species →	Biological Process	acyl-CoA metabolic process	Interproscan
GO:0015645 all species →	Molecular Function	fatty acid ligase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for asel_s0366.g4.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of asel_s0366.g4.t1 across 24 RNA-seq samples of Acropora selago. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

24Samples

10TPM > 0

1Conditions

0.9Max TPM

0.2Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
coral larvae	24	10	0.19	0.94

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR14308011	coral larvae	coral larvae	not recorded	not recorded	SRP315987	0.94
SRR14308006	coral larvae	coral larvae	not recorded	not recorded	SRP315987	0.70
SRR14308023	coral larvae	coral larvae	not recorded	not recorded	SRP315987	0.62
SRR14308022	coral larvae	coral larvae	not recorded	not recorded	SRP315987	0.48
SRR14308025	coral larvae	coral larvae	not recorded	not recorded	SRP315987	0.42
SRR14308020	coral larvae	coral larvae	not recorded	not recorded	SRP315987	0.39
SRR14308026	coral larvae	coral larvae	not recorded	not recorded	SRP315987	0.30
SRR14308017	coral larvae	coral larvae	not recorded	not recorded	SRP315987	0.28
SRR14308013	coral larvae	coral larvae	not recorded	not recorded	SRP315987	0.27
SRR14308010	coral larvae	coral larvae	not recorded	not recorded	SRP315987	0.18
SRR14308004	coral larvae	coral larvae	not recorded	not recorded	SRP315987	0.00
SRR14308005	coral larvae	coral larvae	not recorded	not recorded	SRP315987	0.00
SRR14308007	coral larvae	coral larvae	not recorded	not recorded	SRP315987	0.00
SRR14308008	coral larvae	coral larvae	not recorded	not recorded	SRP315987	0.00
SRR14308009	coral larvae	coral larvae	not recorded	not recorded	SRP315987	0.00
SRR14308012	coral larvae	coral larvae	not recorded	not recorded	SRP315987	0.00
SRR14308014	coral larvae	coral larvae	not recorded	not recorded	SRP315987	0.00
SRR14308015	coral larvae	coral larvae	not recorded	not recorded	SRP315987	0.00
SRR14308016	coral larvae	coral larvae	not recorded	not recorded	SRP315987	0.00
SRR14308018	coral larvae	coral larvae	not recorded	not recorded	SRP315987	0.00
SRR14308019	coral larvae	coral larvae	not recorded	not recorded	SRP315987	0.00
SRR14308021	coral larvae	coral larvae	not recorded	not recorded	SRP315987	0.00
SRR14308024	coral larvae	coral larvae	not recorded	not recorded	SRP315987	0.00
SRR14308027	coral larvae	coral larvae	not recorded	not recorded	SRP315987	0.00

Source: CnidoSite RNA-seq expression matrices (ASELA_TPM, StringTie quantification over 24 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.