Gene detail

Detailed information of asel_s0385.g20.t1 in Acropora selago

Genomic Location: sc0000385_pilon:267449...284545
NR annotation: XP_044174918.1, TNF receptor-associated factor 6-like isoform X3 [Acropora millepora]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

asel_s0385.g20.t1

GTTGCTCGTTTGGTTCGGAGTCTTTTAGGGAAACAAGCACAAATCCTGAAGGTTACGACGAGTATTTCGATCCTCCTTTAGAAAACAAATATGAATGCCCAATCTGTCTTTTGGGTCTTCGCGAACCAGTGCAAACTCTTTGTGGACACCGATTTTGTCGAGGTTGCATTTTGCGCTCAATGAGGAACCATTCAATGTGATTCAAGGTGTCAACAGTGCTGGGTATGAGCATCAAGGAGTTCATAGAAGGCATCATGGTCGGCCACTCATCAACAAAACAAACAACCAAAAAAGGAAGGAGGGAGGGATGCGGGTGCTAAGTGTCCAGTTGATAATGAACATCTGGATGAGTGGCAGCTCAATCCAGACATCTTTGCCAAGCGGGAAATGCTCAATCACCCTGTTTTTTGTCGATTGAAGAAAGTCCATGAGTGCCCGTGGAAAGGGCCTCTAGGCGAGCTTGAGGATCACTTGAATGAGTGTGATTTTGTCGATGTGTCTTGCCCTAAGAATTGCGGTAAGGAATTCCAAAGGAAAGATCTGAAAAAGCATTTGAAGGATGACTGTCCAAATAGGACCATCCCTTGCACCTTCTGCACGGAAGAAGTTTTGTGGAATAGCATGGAGAATCATTTCCAAGATTGCCCTCAATATCCTTTGTCATGTGAGAAGTGCGGAAAAGAAAACATTGCAAGAAATGAGATGCAAGATCACAACGAGAAAGAGTGTCCAAGGGCGGAGCTCAAGTGTCCTTTCAATGTCGTGGGCTGTCCCTTTGAGGGAACTCGCCCAGCAGTGAATGAACATGTTAAGAAGAAGATGTTAAGTCATTTGATGGACCTCACAAAGGAATTCGGAGCATTGACGATTGAGCGGCCAGTCCTCCAAGCACCAAAGAGTCTCTCTCGACGCACCAGGGGTGGGGGAGAAGCCCAGGAGCAGGCTAGTCAAGACGTGCTTCTCATGAATTTGGCGACATTGTGTCAACGACAGCAAACGGAAATCGATGAATTGAGACGCCTTGTTAATGAGACAAAAGGCGTGGTGGAACATTTGGGACGCTGCCTTAATGAATCGTGCATGACGCCGTTGCAAGAACTTACTAACAGGTGGCAGTACTTTCCTCCACTGTTGCCTAGCACTGATCTCTGCAGGGATTCCATCCCGCAACTGCCCGCACGGTTGTTCAGTACGTTACCAACTGATCCACAGCAGGCAGTGAATTCACGTCTTCAGTGATCTCAGGAACCACGATTCAAACTGTTTGAGAAGATTTGACTCATCAGCTTTGTTGGAAAGATGTTTGAATCGATCAACCGTCAAGAAACGAGAGGGTTTGAATTCGAAGGCCGTGTGTGCAATGGCTCTTATATCTGGAAGATTGAAAACTACCGACAGCGTCGTCAGGACGCCCTCAGCGGCATTGCGACGGCTCTACACAGCCCAGCCTTCTATACCAGCCTCTATGGTTACAAGCTGTGCTTGCGTATCAACTTGAATGGCGTGGATTGTGGAGATGGAAGATACATAGCTCTCTTTGTGCACATGATGAACGGCGATTTTGATAGCGTTCTTGAGTGGCCGTTTACCGGAAGGATCACCCTTACCATCTTGGACCAATCCGAGGGCACCGAATTTCGTCAGCACATCAGCGAGACCCTTATTGCCAAGCCCAACCTGTTGGCCTTTCAGCGGCCAACAGCTCCGCGCAACTACAAGGGCTATGGCTACGTGGAGTTTGCTCCGATCGAGCACATCCGAGATCCCCAGTACATTAAAAACAATACCATGCTGGTTCGCGTTCAGATTGATCATTGAGAAACCATTCGCACTAATTCAGCATTTATGGCCTCAAGCGCGGATGTGGTCGGATTTGTGGGGTTGGACGCCATGTCATCATAATAGTTCAGTTATTTTCTTTTTCCATGTCCGGTGGAGACTTTTGGACACCGTTTTGTTCACGTTAGGATTAAGAAGCAATTCATGTCATAGCCTTTTAAGTGAGTGCTCAAGAACACAGGACATCATTTCAGCTAGCACAGTAACAAAAGATCATGATGCAATaggccactttcgaattgtgcaaaaacaaaaggacaaaggcgaggctgagaggactagtttgcgatttccttttaaaaaACAAAGAAAAATGCAAAATTTCcctctcaacgtgactttgttcttttgttcttacacatttcgaaagtGGCCTATTGGCGAATTGACGGATGGTTTTCACGTTGGACAAATAGAAACCATGATCGCGAATCCCTTCGAACTTATAATAAGAAAATGAGAAATTGCAG

Protein

Uniprot

Uniprot term	Description
Q9BUZ4	TNF receptor-associated factor 4 OS=Homo sapiens OX=9606 GN=TRAF4 PE=1 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02176	zf-TRAF	TRAF-type zinc finger	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001293	Domain	Zinc finger, TRAF-type	Interproscan
IPR013083	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10131	TNF RECEPTOR ASSOCIATED FACTOR	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0008270	Molecular Function	zinc ion binding	Interproscan
GO:0033209	Biological Process	tumor necrosis factor-mediated signaling pathway	Interproscan
GO:0070534	Biological Process	protein K63-linked ubiquitination	Interproscan