Gene detail

Detailed information of asel_s0387.g10.t1 in Acropora selago

Genomic Location: sc0000387_pilon:192446...209085
NR annotation: XP_029205934.2, F-box only protein 9-like [Acropora millepora]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

asel_s0387.g10.t1

CAGCGAATCAAAAATGCTCTTTCAATTGTTCCACTCCTGTCAACAACAAACATGGCGGTCGAAGGGAAAACATTGATCTGTAAATTTGCTTTTCGTGGTTATACTATGAGGAAACTTGTGGAAATAATCTGTTGCGGCATTACGATATCACTATAAGATGGCGGATGAAAGAAGGTTGGATGGGGAACTTGCATCTTTTCGTCGTGAATGGCAAGAGGAAATCAGACGAACAGTGGCTGAGGGTGGTTCTTCATCCAGAAATTCACCCGTTCCCCCAGAATCAGATGCGCGGCAACGAAGCTCTGAGGGATCACCAGAACCACTTCCTTTGACAAAGGACACTATCAGCGCAGCACAAATTCTGGAGGAAAAGGCTACAAAGCTTTTCCTGGAAGGAGTATCAGCTGAAAGAAATGGGAAAGTTTATGAAGCGACATATTTTTACCGACAAGCTCTTCAACTTGTGCCAGACATTGAGTCAAAAATCAAAGACTTCACAAATTTTAATCTGGAGTCAGAAGATGAAGATGATGCTTATGATGACAATCTTCAAACATTCCAAGATGCTTATGACATTTCAAATCTAGATGACTCGACAATCAGATTCAACTCTTTGTCTGTGAATGGTATTTGTCGGCCACAATATGAGACAAGGATGACACACATCTCTGACATTCCTCTAGAACTCATCATGTACATTTTCAAGTGGGTGGTGTCAACGGAGCTGGATATGAAATCACTGGATCAACTTGCGAGAGTTTGCAAAGGATTTTATGTCTGTGCCAGGGACCCTGAGATATGGAAACTTGCTTGTCAAAGAGTTTGGGGCCTACACTGTAGCAGTGCTTCCCAGTGGAATGGATCATGGAGACTAATGTATATTAAGCAGCCGCACCTTTTATTTGTGGAACTCATCATGTACATTTTCAAGTGGGTGGTGTCAACGGAGCTGGATATGAAATCACTGGATCAACTTGCTAGAGTTTGCAAAGGATTTTATGTCTGTGCCAGGGACCCTGAGATATGGAAACTTGCTTGTCAAAGAGTGTGGGGCCTACACTGTAGCAGTGCTTCCCAGTGGAATGGATCATGGAGACTTATGTATATTAAGCAGCCGCACCTTTTATTTGTGGGAGTTTACATCAGCAAGACATCTTATGTGAGACCAGGTGAAAGGACGCTGAGCTTTTCCTATCGACCATTTCATTCCGTGGAGTACTTCCGTTACATGAGGTTCTTTGTGGATGGCTCTGTCCTACTGCACACAAGCGCTGATGAGCCTGTGACTGCTCTCGCAAGATTAAAACACAAGCACGGTGGGGGAAATCCATCAGTATCTGTGGGACAGTACAGATTATCTGAAGATATGGTCACCATAGTCTTGAACAGAAAGCCAGCAACTGACAGCCATAATCAAGCAAGAGGCAGAAAAACAAGAGGTCCTCCCTCTCCAATTTTGGAGCAAATCTTCCGCATGGAATTAAAAGTCAGCAGCACAGGACGACGTCGTCGGCATAACCGCCTGACCTGGGCTCATTACAGTGTCAGTACAACTTACAGATCATCTGGCCAAACAGTCTGTTCAGAGTTTGACTTGAACAACCAATTTCCACCCCTGTACTTTTCTGTTGTCAAGAGTTTCTGCAACAATGCAGTAGCACCGTTGGGTTGAGAAATTTCTCGCAATTTTAATAATTCTTGTCTCTTCCTGCGACTTTAGAGCAAGTTGTCGTTCATTTCAACAAAATAATAATTTAGTAATTAACGTTATCTAGAAAAGCTTTAATCTGGTCTGTGTTGTGCAATAGGACAGAAAAGCCATGAGCCCCTACACAGAAAGCAAATCAATAAATCCAATAAGGCATTTTTAATGCCCTAGAGGTCTGATGCCCCATTCGTAGCAATGGGAGAGTGCAGGGGAATAAGCTAAGGTTTGTGTGTATGTTTGTTTTCATGCACAATGTAGATAATGTTTTCTTAGTTTTTGCAATGTGACCATCATTTTGGTTCTTTGTTTGAATTTTTTAATGATCCAGTCACAAACCAGTTAAATTTTCATGTTTCAGTTTAATAAAGTTGAGTTGTGAGAACTGTTTTGCTGGGCATTCATGAAGCCTTAGTAAATCATTCAAGAAATGCATGCAAAGTTTTGATGCATAATAATCATGGTTATTGCATGGACACATCGTTTTGATCCTACTCATGTACAGaataggccttttgcagctaagccatcacgtgacctacttttcagaaaattatggcatatagcttaacaaatgccagaaatggaaaaagcatgttgacaatatcaaaatggccaaatttgaggccccgatcattaaaagatgagatttatg

Protein

Uniprot

Gene family

Uniprot term	Description
Q6P3K3	F-box only protein 9 OS=Danio rerio OX=7955 GN=fbxo9 PE=2 SV=1
F6Y9J3	F-box only protein 9 OS=Xenopus tropicalis OX=8364 GN=fbxo9 PE=3 SV=1
Q9UK97	F-box only protein 9 OS=Homo sapiens OX=9606 GN=FBXO9 PE=1 SV=1

Gene family	Subfamily
Ubiquitin Family	E3\|E3 adaptor Cullin RING\|F-box

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF12937	F-box-like	F-box-like	Domain	Interproscan
PF19270	FBO_C	F-box only protein C-terminal region	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR045118	Family	F-box only protein FBXO9/FBXO48	Interproscan
IPR036047	Homologous_superfamily	F-box-like domain superfamily	Interproscan
IPR001810	Domain	F-box domain	Interproscan
IPR045464	Domain	F-box protein Hrt3/FBXO9, C-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12874	F-BOX ONLY PROTEIN 48-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005737	Cellular Component	cytoplasm	Interproscan
GO:0019005	Cellular Component	SCF ubiquitin ligase complex	Interproscan
GO:0031146	Biological Process	SCF-dependent proteasomal ubiquitin-dependent protein catabolic process	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K10295	FBXO9; F-box protein 9	-	Ubiquitin system	ko04121	deepkoala