Gene detail

Detailed information of asel_s0388.g4.t3 in Acropora selago

Genomic Location: sc0000388_pilon:103466...143377
NR annotation: XP_029210262.2, sodium/hydrogen exchanger 10-like [Acropora millepora]
Species Acropora selago · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

asel_s0388.g4.t3

ATGGTCCTTCCATTTGAAAGACAGCCGCTCTTACATAAAAGATACGCAGCTCTTTCTTCCCCCGACCTGACAAGATCCTATCTGGGCGAAAATGGCGACTCGATTGAAGGCGAAGAGTATGCGAATTTCCTGAAAGCACTTGCAAGCGGAGAACGGCAAGATCCAGGAGTATCAAAACCCAAGCCAAGTGCAAAGGGGCAAACAGGTCACCCAACCCAAGGGAATAAAGACTCAAAGCCAGGAAAAAAGTCATCTGGAACAGCAGTCTCACCACAGAGAAGCAGCGGGCTGCTTCAAGTGACACTGACAGCAAAGCGCAATAAGGAGAAACATCAGGAGACAATGAGAGTTATTGAGGATCACATGTTACAGCACAAACAGGAAGAGAGGGCCTTAAAGAGATATGAGGGTGACATCATTAAGAAACAACACCATCTGCGAAGAACAATGGAGGATGTTAATAACACTATTGTTCGGCAGGTTATGAAGGGATGGCCAATTCCTTACACCGTCGTTTTAATTGTCGTTGGTCTTGCTGTTGGAGCATTATCTGGCTCCGTTACAGCTGTTCAAAGGTACACCTCCTTGTCAAGCCAAAATCCTCACCTTATTCTTACAACATTTTTGCCAGTTCTTCTATTTGAATCAGCCTTTGCTATGGACGTCCATATATTTTACAAGATGTTCTGGCAGGTCGTTTTGCTTGCAGTCTTTGGTTTGGCAGTGGCCACAGCTCTGTCTGGTGTAATGGCAAAAATGGTCTTTGTTTATTATCATTGGACCTGGTTTGAAGCATTGCTCTTTGGCTCAATAGTCAGCGCTACGGATCCAGTGGCTGTAGTGGCTTTGCTTAACGACCTAGGAACAAGCAAACAGCTATCTACCATCATTGAGGGCGAATCGTTGTTGAACGATGGTATGGCAATTGTGCTCTACAAGATATTTTTCAACTTGGCGTTTTCTACAATGACTGCCACGGAAATAGGGTTGTACTTTCCTCAAGTGGCTCTTGGAGGATTCTTTTTTGGTCTAATAGCTGGAAGAGTCACTGTGTTTTGGCTACAGCATGTATTCAATGACGCTTTGGTAGAAATCAGTATCACCTTAGCAAGTGCTTACCTCACATTTTATATTGGAGAGGAAGTATTGGGGATTTCAGGGGTCATTGCTGTTGTGATGCTTGGGATACAAATCAACGCTCTCAAAACAAGCATCAGCCCAGAGGTGGAAGTTTTCCTGCACCGGTTCTGGGAAATGTTAGCCTATCTGGCCAATACACTGATATTCATAATGGTTGGCGTTGTTATCATGGAAAAAGCGCTGAACAGTTTAGACGAGTACGACTTGTTCCTGTTGGTGGTGGGCTACTTTGGCATTACGGTGATAAGGGGTTTAGTAATGATGGCATTCAGTCCCATTTTGATGCGTATTGGATACGGTTTGTCATGGCAGAATGCTGTGGTGACGGCCTGGGGAGGATTGCGGGGCGCAGTAGGCCTTGCTCTTGCACTGCAGGTCTACATCGATCAGCCTCTCATTGGTGGAAAGGTATTGGCACACACAGCTGGCATCGTGATGTTTACTCTTCTGGTTAATGCCACAACTATGAAAAAGCTGCTTGAGAAACTCGGAATGAGTGATATATCAGACTCCAAGAAAATCTCTATGGCGAATGCTGTGCGGCAGATACAAGAGAGCAATCAACGCACATTAACAATGCTGAAAGCAGATCGCTTTTTGGCTGACGCAGACTGGGATATGGCGGAGAGAGATTGCGAAGTCCATAATCCCTACATGGAAGTTGAAGAAGGGGAGCACGCAGAAGAAACTCCACTGCTTGTTCGCCTGAGCACGTGTCCAAACTGTGAAGCCAGTGTTCCTAACGAACCATCTCCAAAAGAATTTGCAGAGATGGCGAACGATGGCAGAGTTCGTTTGATAAAGGCTCTGAAGGTCAGCTACTGGAAACAGTTTGAGCATGGTATGCTGTCCCGTGAGGCAGTGCAGGCCTTGATTAATCTGGCTGATACCGCCATGGACGAGGAAGAAAGTTTTATTGAAATGGATGATTTGAAGCCTTACTGGAGAGTGCCACCAATCCTTGAAAAAGTCAAAGACAAGCTGGAACAGTTGAAGCATCAAAAACCCGCGGAACGCATCCCTCCACCAACGATCAGGGTTCTATCTTTCATGTACACGGTGGCTGTGCATGTTTCGTTTGACATTGTCATGAATGTTTTAATCATTATCAATATGGTGCCGATTATTCTGGAATTGGCTTCTGACGACGATGCTCCGTTTATGCCCATCTTAAACAAAATCAACTATTTTTACTGCTCTTTGTACGTCACTGAAGCAATTTGGAAGATGATGGCATTCAGGCGTTACTACTTCAAAGACTACTGGAACCTATTAGATTTGTTTATAGTGATCTTGTCTATAGTCGACATAGTGATTGACCTATCAGTTGACCAGGCTACAGGTGGATTCTCTCCATCTATCCTTAAGGTGGCCAAGGTTTTCAGAGTGTTGCGAATGGGCCGTGTGCTCAGACTGTTCAAATTCGCATCCGGCGAATTTGACGACGGAGGGAAGAACATCGATATTCGAACAACACAGACTGTTCTTCCAAAAGTGATAGATTTCGTTAACGACATCATCAATCATCAGTTAAGCTTTGGATATGACGTCGGTAAAGGCTACATCATCGCCGAAGAAGAAGTTATTAAACTCATTGATCACATGGTAGTGGACAAACGAATTGCAAGAGACTTGAAGCAGAGATCCGAACAGAATCGTTTAAACGTTGTCAGAAGCTTAGGCATGCTGCAAAGAGAGCATCCCGGAATAGCCATCTCAGTGAAGACGCGGCAAGCAATTCGTACCATACTTAACAACGCCCGTGACGTCATTCACGAGCTCAAAGGGGGCGGCTTGTTAGACGAGGCAGAAGCCGCAAAACTTGAATCGATCGTTGAAGTGAAAATGAAACGGCAATTAAGCACTCCAGCATCTCTTCCACCTCAGAAACCTTTAGAGTTGCTTCGCAATGTGATTTGGTTGGAAGGAATGCCTGCAGAGGCAGTCGAGTTCATCACATCAGCAGCACGCATCAAGTTGTTTGAGGTTGGTGATACTATCACAAGGCAGGGTGAAGATGCTACGGGGATATACCTCATTGTGTCGGGAATGGTTAAGATGGTTGGTGTATCGGTGAGAAAAAAGAGTTTGGAGGAGAACGAGGAACCGGAAGTTGGAGAGATGATTGTGACCAAAGACTACATTTCTGCTGGGAACTTGATTGGAGAATTGGCAATGCTCACTTCAGCGAGGAGAAACTCGTCCTGCACTTGCGAGTCTGAGGTCCAGGTATTTTTTATCCCAAGAGAAGACATGACAGAAGCCATGGATCGCTTTCCTGACCTGGTGAACAATCTATGGAGAGTTTGCGGTGTGCGATTGGCTGTGCCACTCCTCTTGGAGGTGCCAACTTACTACAACTGGACAAAAGACAAAATTCGTATCATGTGTGAACGATCTCACATCGCAGCTCTTCCCAAGCCTCCAAATGTGGTATTTAAGATTGCTGACTACATGAGAGAGGCTATACTTGTTCAAGGTAAGGTTACGGAGGCCGCTACAGAAACCATTTACGAAGCACCTTGTGTTCTGCCAAAAAATCATCGACTATTCAAATTACATTTCGAAGTGGAGGAGCCCAAAATTTTAGTCATCACCCGTTCACACGAAAGTGCAATGCCCGACGATCCAGAGGATAACCCTTCAGTGCTGGATTTTGTTGGAATTCACGCTCGCGGACGCGATTCATGGATCAGGAGAGAAATCGTTCATGGAGTAGATTCTGGTTCAGAAACAGTATTCAGAGGGAAACAAAAAGGGTCAAATAGATGGGAAGGGAGTTACCGAAAGCTTGATCCAGTACAGGACAGGTTACAGGGCAGAAGGATCACAGTCTCATCCATGAAAGAGGATGAGAAAGACTGTTAG

Transcript

asel_s0388.g4.t3

gtctctaagcttggtgaaaaataagacagcgagcgaaatacactcgctgcgcgacacttggacTCCTTGTGAGCCCACGATCAGCAACAGCTGTTTCGTAACAATGCCTCCCATGGCAACGCTTGTCTACCGAAGTCATCAAGTGTGAGCTGATCGTGTTTATGATTCTCGAAATCTTTCTCTTTGGGGGTTAAAAATGGTCCTTCCATTTGAAAGACAGCCGCTCTTACATAAAAGATACGCAGCTCTTTCTTCCCCCGACCTGACAAGATCCTATCTGGGCGAAAATGGCGACTCGATTGAAGGCGAAGAGTATGCGAATTTCCTGAAAGCACTTGCAAGCGGAGAACGGCAAGATCCAGGAGTATCAAAACCCAAGCCAAGTGCAAAGGGGCAAACAGGTCACCCAACCCAAGGGAATAAAGACTCAAAGCCAGGAAAAAAGTCATCTGGAACAGCAGTCTCACCACAGAGAAGCAGCGGGCTGCTTCAAGTGACACTGACAGCAAAGCGCAATAAGGAGAAACATCAGGAGACAATGAGAGTTATTGAGGATCACATGTTACAGCACAAACAGGAAGAGAGGGCCTTAAAGAGATATGAGGGTGACATCATTAAGAAACAACACCATCTGCGAAGAACAATGGAGGATGTTAATAACACTATTGTTCGGCAGGTTATGAAGGGATGGCCAATTCCTTACACCGTCGTTTTAATTGTCGTTGGTCTTGCTGTTGGAGCATTATCTGGCTCCGTTACAGCTGTTCAAAGGTACACCTCCTTGTCAAGCCAAAATCCTCACCTTATTCTTACAACATTTTTGCCAGTTCTTCTATTTGAATCAGCCTTTGCTATGGACGTCCATATATTTTACAAGATGTTCTGGCAGGTCGTTTTGCTTGCAGTCTTTGGTTTGGCAGTGGCCACAGCTCTGTCTGGTGTAATGGCAAAAATGGTCTTTGTTTATTATCATTGGACCTGGTTTGAAGCATTGCTCTTTGGCTCAATAGTCAGCGCTACGGATCCAGTGGCTGTAGTGGCTTTGCTTAACGACCTAGGAACAAGCAAACAGCTATCTACCATCATTGAGGGCGAATCGTTGTTGAACGATGGTATGGCAATTGTGCTCTACAAGATATTTTTCAACTTGGCGTTTTCTACAATGACTGCCACGGAAATAGGGTTGTACTTTCCTCAAGTGGCTCTTGGAGGATTCTTTTTTGGTCTAATAGCTGGAAGAGTCACTGTGTTTTGGCTACAGCATGTATTCAATGACGCTTTGGTAGAAATCAGTATCACCTTAGCAAGTGCTTACCTCACATTTTATATTGGAGAGGAAGTATTGGGGATTTCAGGGGTCATTGCTGTTGTGATGCTTGGGATACAAATCAACGCTCTCAAAACAAGCATCAGCCCAGAGGTGGAAGTTTTCCTGCACCGGTTCTGGGAAATGTTAGCCTATCTGGCCAATACACTGATATTCATAATGGTTGGCGTTGTTATCATGGAAAAAGCGCTGAACAGTTTAGACGAGTACGACTTGTTCCTGTTGGTGGTGGGCTACTTTGGCATTACGGTGATAAGGGGTTTAGTAATGATGGCATTCAGTCCCATTTTGATGCGTATTGGATACGGTTTGTCATGGCAGAATGCTGTGGTGACGGCCTGGGGAGGATTGCGGGGCGCAGTAGGCCTTGCTCTTGCACTGCAGGTCTACATCGATCAGCCTCTCATTGGTGGAAAGGTATTGGCACACACAGCTGGCATCGTGATGTTTACTCTTCTGGTTAATGCCACAACTATGAAAAAGCTGCTTGAGAAACTCGGAATGAGTGATATATCAGACTCCAAGAAAATCTCTATGGCGAATGCTGTGCGGCAGATACAAGAGAGCAATCAACGCACATTAACAATGCTGAAAGCAGATCGCTTTTTGGCTGACGCAGACTGGGATATGGCGGAGAGAGATTGCGAAGTCCATAATCCCTACATGGAAGTTGAAGAAGGGGAGCACGCAGAAGAAACTCCACTGCTTGTTCGCCTGAGCACGTGTCCAAACTGTGAAGCCAGTGTTCCTAACGAACCATCTCCAAAAGAATTTGCAGAGATGGCGAACGATGGCAGAGTTCGTTTGATAAAGGCTCTGAAGGTCAGCTACTGGAAACAGTTTGAGCATGGTATGCTGTCCCGTGAGGCAGTGCAGGCCTTGATTAATCTGGCTGATACCGCCATGGACGAGGAAGAAAGTTTTATTGAAATGGATGATTTGAAGCCTTACTGGAGAGTGCCACCAATCCTTGAAAAAGTCAAAGACAAGCTGGAACAGTTGAAGCATCAAAAACCCGCGGAACGCATCCCTCCACCAACGATCAGGGTTCTATCTTTCATGTACACGGTGGCTGTGCATGTTTCGTTTGACATTGTCATGAATGTTTTAATCATTATCAATATGGTGCCGATTATTCTGGAATTGGCTTCTGACGACGATGCTCCGTTTATGCCCATCTTAAACAAAATCAACTATTTTTACTGCTCTTTGTACGTCACTGAAGCAATTTGGAAGATGATGGCATTCAGGCGTTACTACTTCAAAGACTACTGGAACCTATTAGATTTGTTTATAGTGATCTTGTCTATAGTCGACATAGTGATTGACCTATCAGTTGACCAGGCTACAGGTGGATTCTCTCCATCTATCCTTAAGGTGGCCAAGGTTTTCAGAGTGTTGCGAATGGGCCGTGTGCTCAGACTGTTCAAATTCGCATCCGGCGAATTTGACGACGGAGGGAAGAACATCGATATTCGAACAACACAGACTGTTCTTCCAAAAGTGATAGATTTCGTTAACGACATCATCAATCATCAGTTAAGCTTTGGATATGACGTCGGTAAAGGCTACATCATCGCCGAAGAAGAAGTTATTAAACTCATTGATCACATGGTAGTGGACAAACGAATTGCAAGAGACTTGAAGCAGAGATCCGAACAGAATCGTTTAAACGTTGTCAGAAGCTTAGGCATGCTGCAAAGAGAGCATCCCGGAATAGCCATCTCAGTGAAGACGCGGCAAGCAATTCGTACCATACTTAACAACGCCCGTGACGTCATTCACGAGCTCAAAGGGGGCGGCTTGTTAGACGAGGCAGAAGCCGCAAAACTTGAATCGATCGTTGAAGTGAAAATGAAACGGCAATTAAGCACTCCAGCATCTCTTCCACCTCAGAAACCTTTAGAGTTGCTTCGCAATGTGATTTGGTTGGAAGGAATGCCTGCAGAGGCAGTCGAGTTCATCACATCAGCAGCACGCATCAAGTTGTTTGAGGTTGGTGATACTATCACAAGGCAGGGTGAAGATGCTACGGGGATATACCTCATTGTGTCGGGAATGGTTAAGATGGTTGGTGTATCGGTGAGAAAAAAGAGTTTGGAGGAGAACGAGGAACCGGAAGTTGGAGAGATGATTGTGACCAAAGACTACATTTCTGCTGGGAACTTGATTGGAGAATTGGCAATGCTCACTTCAGCGAGGAGAAACTCGTCCTGCACTTGCGAGTCTGAGGTCCAGGTATTTTTTATCCCAAGAGAAGACATGACAGAAGCCATGGATCGCTTTCCTGACCTGGTGAACAATCTATGGAGAGTTTGCGGTGTGCGATTGGCTGTGCCACTCCTCTTGGAGGTGCCAACTTACTACAACTGGACAAAAGACAAAATTCGTATCATGTGTGAACGATCTCACATCGCAGCTCTTCCCAAGCCTCCAAATGTGGTATTTAAGATTGCTGACTACATGAGAGAGGCTATACTTGTTCAAGGTAAGGTTACGGAGGCCGCTACAGAAACCATTTACGAAGCACCTTGTGTTCTGCCAAAAAATCATCGACTATTCAAATTACATTTCGAAGTGGAGGAGCCCAAAATTTTAGTCATCACCCGTTCACACGAAAGTGCAATGCCCGACGATCCAGAGGATAACCCTTCAGTGCTGGATTTTGTTGGAATTCACGCTCGCGGACGCGATTCATGGATCAGGAGAGAAATCGTTCATGGAGTAGATTCTGGTTCAGAAACAGTATTCAGAGGGAAACAAAAAGGGTCAAATAGATGGGAAGGGAGTTACCGAAAGCTTGATCCAGTACAGGACAGGTTACAGGGCAGAAGGATCACAGTCTCATCCATGAAAGAGGATGAGAAAGACTGTTAGCTCTACTTTTAGCCAGCGAGGCCTCATGTGCAGGGTCGACTCATGGGATGTTATCAGCTTCTCATCTCGTACAGAAAACCTACAGGCGTTGGCGGCAGTGATAAATTATGTCTGACCACTCTTTAGCGTAAATATCTAGGGTTAGCAGTTGTAGACGTTTAACAAGAGACAATGTTTTGTGCATTTTTGCATACTGTTGTTGAATAAACTGTCTCTTTAAAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
A3RL54	Sperm-specific sodium:proton exchanger OS=Strongylocentrotus purpuratus OX=7668 GN=SLC9C1 PE=1 SV=1
Q6UJY2	Solute carrier family 9 member C1 OS=Mus musculus OX=10090 GN=Slc9c1 PE=1 SV=3
Q4G0N8	Solute carrier family 9 member C1 OS=Homo sapiens OX=9606 GN=SLC9C1 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004272 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00027 all species →	cNMP_binding	Cyclic nucleotide-binding domain	Domain	Interproscan
PF00999 all species →	Na_H_Exchanger	Sodium/hydrogen exchanger family	Family	Interproscan
PF00520 all species →	Ion_trans	Ion transport protein	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000595 all species →	Domain	Cyclic nucleotide-binding domain	Interproscan
IPR027359 all species →	Homologous_superfamily	Voltage-dependent channel domain superfamily	Interproscan
IPR014710 all species →	Homologous_superfamily	RmlC-like jelly roll fold	Interproscan
IPR018422 all species →	Family	Cation/H+ exchanger, CPA1 family	Interproscan
IPR006153 all species →	Domain	Cation/H+ exchanger	Interproscan
IPR005821 all species →	Domain	Ion transport domain	Interproscan
IPR018490 all species →	Homologous_superfamily	Cyclic nucleotide-binding domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10110 all species →	SODIUM/HYDROGEN EXCHANGER	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005886 all species →	Cellular Component	plasma membrane	Interproscan
GO:0006812 all species →	Biological Process	monoatomic cation transport	Interproscan
GO:0015385 all species →	Molecular Function	sodium:proton antiporter activity	Interproscan
GO:0015386 all species →	Molecular Function	potassium:proton antiporter activity	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0051453 all species →	Biological Process	regulation of intracellular pH	Interproscan
GO:0071805 all species →	Biological Process	potassium ion transmembrane transport	Interproscan
GO:0098719 all species →	Biological Process	sodium ion import across plasma membrane	Interproscan
GO:1902600 all species →	Biological Process	proton transmembrane transport	Interproscan
GO:0015297 all species →	Molecular Function	antiporter activity	Interproscan
GO:0055085 all species →	Biological Process	transmembrane transport	Interproscan
GO:0005216 all species →	Molecular Function	monoatomic ion channel activity	Interproscan
GO:0006811 all species →	Biological Process	monoatomic ion transport	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K14726	SLC9A10_11; solute carrier family 9 (sodium/hydrogen exchanger), member 10/11	-	Cilium and associated proteins	ko03037	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.