Gene detail

Detailed information of asel_s0437.g2.t1 in Acropora selago

Genomic Location: sc0000437_pilon:47696...59980
NR annotation: XP_029202600.2, uncharacterized protein LOC114966776 [Acropora millepora]
Species Acropora selago · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

asel_s0437.g2.t1

ATGTGGAACGTTTCTGCTCTGTCAATGCAGCAAACCCTGATTTGTAAGATGACATGCGAACTTGCGATATTTTTCATAATGATCGGTCTGCACTCGACGCACCTAGTGGTCGAGGCCACTCCACTGGTGATTGAGCCGGAGCTTGCCATTAATTGCCCGATCGTTAAATGTTCAGCGGGATATCACTCAGATTGTCAATCAAATGGACAACCACGCTGTAAGCAGTGCAGTGAAGGCTATTATTCGTCACATCCATCACAAACTAAAGAATGCCTGCGATGTTCACAATGCGGAGACAACGAATTCGAAGTGCAACCTTGTTCGCCGACTACAAATGTGATTTGTCAAAAGTGCAGAGAATGTCACTCACCCTTTCCATTCGTGTTGAAGTCTTGCACCAGGACATCAGACACAATTTGCGGGAATTGCAGTTCAGCCCTAGGACTAGAATGTGAAGAAGAAAAAAATCCTGAAGAACACTCAAGTCGACGCGAAGACAGGGAAAAGGGGAACAATGAGCAATTTATGCCAGCGCATCACAAGAAAAGGAAATTCCAAGTGATGGAAATTCCAGCCGGAGTTAGAGTCCAGCCTACTCGTCCGAGTCCAATAACAATCTCTCTTCCTCTTTCTTTCGTTCCCACAATGTCTGTGAGCACCTCTATCCATTCTATCGACAACTCAACGAGGAGTATACGGGAAACTAGAATAGCAGCAGATCCGCTGCCGCAGACGAAGAAGTCTCCAACAAGAACTTTTGCACCTTTTTCAAGTCCAAGTATAAAGAAAAAAGAAGCTGCTGTGTATAGTGAGACAGGCGAGAAAAAAAATACAATAAGGAACAAAAGGTGGCACTCAAAGTTCGAGACAAGAAACATGACTGAAGCTTTGAAACAATCGTCAGACGTTTCACCTGAGCCGTGGGAACCTTCTACTGCAACTGGAGTCATCTTCTCGTCCCATTTTGAACAGGATAAAACGACGACCTACAAATTTTCGCTGCGCACGACATCAAATACAGTTTACTATGCTCTTCCTGAGCCTTCTGGCTCACCCCTATGGAGCTCTCCAGTCCGAATTGCAATTTTCGTAATACCGGGGACTGTGTTTGTCCTAGTAGTGTTTGTCTTGCTTGCCAAAGTGATTAAAAGAAAAAGATGCACTAAACGAGGATCCCGCGGGCCTTTTTTGTGCCAGGCCGAACGCGGAACCCAGCATCCCCGATGTCCTGAGTCAAGAGAATACTGGATTGACAGACAAGCTCCACGTGCATTGAAAAGCGCTGAGACAGACGACTCGGTTCTAAGCTCTACCCAAAACACAATAATAAGCTATCTCTCAGAAGACATCAAGTCTGTACGCGAAGTCTTTCCAGAGGACCAGAGCATGCACATGTGGTCAGAGCTCCAGTTTGTTACAAGTGCGTGTGACAACTTTGACAGCACCGGGGGAAAACTAACCCACCCAAATTCCGATATCTGCATCAACATTGAGCCTGGAACATTCCCCCACGGAAAACAACAGCCTATCTTTTTCCACGTGGTTTACAATGACACGTATGTGATTCGGGACATCCCGGAGACAAACGAGAGGACGCTCATTTCTCCTGTGATAAAGTGCGGTCCCGATGACATCAATCCTCAGAAAGCGATGGAGATTGTTGTTCCTCATTGCCTCTACGTAGACGATGTGAAAAAAGGATCTATTGCAGTGTACAGATGTGAGCAGTTTACTGACGAAGAACCACAAAGTTGGGAGAAAATCCCATCCTCTTCTGAAAGATCCTGTCATTCCAAGGCTTGGTTTTCGATTAAAAAGGACAGCATCATCATCAAAACGAAGGTTTTTTCCATTTGGAGCATCTTTGTTTGCGGTGGTGGTGGACCAAAGAGAAAGAGAGTAACTGCGTTTGCCAGCAAACCGAATCCAGAAACCAATCTCATTTCTCTTCGCTGCTACATCTACGGGGACAATGAAGATTCCAAGAGGAAAGTAGAGCGCATCGATAAGGAGCGCTTTCCTGGAACTAGAACAGCAGCTTGTGAAAAACCTTTCAAGCTTTTCAGCGACAATCAAGACATCAATGTGTGGCTTGATAAGAACGCCATTACAGAGAAAGGATGGATGCTTGATGAAACTCCTGCCTCACAGATCTACAGTTATGAGATGGCATACAGGAATGGATTCAGGTCCAAATATGCTTGTGAATTCTCAGTGAAGCCCATTGCAGATTGTTCGACTCAAGTTGCAGACTTCTCCTGCTTGTTGTACTTTCAACAGACTGGCCATACACAGGACTTTATTTATGTCAATCCAGGGATCTCTTTTCTTAAACCCCCGCCAACCTTAGATGACAAAGGAAATAGCAGCAACGGCGACCAAACTCAACACTCTTTTAGTGAAACCTCAGACACAGACCCTTCAGGCTTTGTAATACCAGAACATTTGCGCAGACGTTACGACAAGCCCGTTACAGAACAGGACTGTGTTTGTATATGCGATCATATTGTGGATTGGAAAATGCTTTTACGACATTTGAAGGTATCAGAAGGGATTATCAGAAATGTAGATGAAGATTACAGAAAGACAAACGAAAAATGTTATCAAGGGCTTTTGGAATGGAAAAGGACTCGGGCCCATGAAGCTACTATAAGAAATTTGTGTACTGCCTTGTGGTCTGTTCGTTACACAGAAGCGCTTGAAAAATTGTCTAGCCAAGATGTTGGCCCGACACTGCTGGACATCCCAGAAACTGTTTGA

Transcript

asel_s0437.g2.t1

ctttcttctcaggagaaaagaaaggaattcaaagcgatgaaaaccataataaatccgatgatatcgagtcctttTCGTGAATGCAGGCATACCACATCCTACCATCGTATGTGACTTTTCAGTGTCTGCGGTTTGTGCTGATTAATCGCGCGAAACAGTTCTGTTCAAGGGGAAACCCCCAATAAAAAGGACGAATTTGATAGGTTCTGGGAATACGGAAAAAAGGCATTCTAAGAAGTCGACGGTATAGTAACTCATTTCCGATGTCATCTTCATTTGACCGCTTGATCATGATGTATTGTGCTACGCGATGAACTAAAGAAAGCAGCATTTGATATGTGGAACGTTTCTGCTCTGTCAATGCAGCAAACCCTGATTTGTAAGATGACATGCGAACTTGCGATATTTTTCATAATGATCGGTCTGCACTCGACGCACCTAGTGGTCGAGGCCACTCCACTGGTGATTGAGCCGGAGCTTGCCATTAATTGCCCGATCGTTAAATGTTCAGCGGGATATCACTCAGATTGTCAATCAAATGGACAACCACGCTGTAAGCAGTGCAGTGAAGGCTATTATTCGTCACATCCATCACAAACTAAAGAATGCCTGCGATGTTCACAATGCGGAGACAACGAATTCGAAGTGCAACCTTGTTCGCCGACTACAAATGTGATTTGTCAAAAGTGCAGAGAATGTCACTCACCCTTTCCATTCGTGTTGAAGTCTTGCACCAGGACATCAGACACAATTTGCGGGAATTGCAGTTCAGCCCTAGGACTAGAATGTGAAGAAGAAAAAAATCCTGAAGAACACTCAAGTCGACGCGAAGACAGGGAAAAGGGGAACAATGAGCAATTTATGCCAGCGCATCACAAGAAAAGGAAATTCCAAGTGATGGAAATTCCAGCCGGAGTTAGAGTCCAGCCTACTCGTCCGAGTCCAATAACAATCTCTCTTCCTCTTTCTTTCGTTCCCACAATGTCTGTGAGCACCTCTATCCATTCTATCGACAACTCAACGAGGAGTATACGGGAAACTAGAATAGCAGCAGATCCGCTGCCGCAGACGAAGAAGTCTCCAACAAGAACTTTTGCACCTTTTTCAAGTCCAAGTATAAAGAAAAAAGAAGCTGCTGTGTATAGTGAGACAGGCGAGAAAAAAAATACAATAAGGAACAAAAGGTGGCACTCAAAGTTCGAGACAAGAAACATGACTGAAGCTTTGAAACAATCGTCAGACGTTTCACCTGAGCCGTGGGAACCTTCTACTGCAACTGGAGTCATCTTCTCGTCCCATTTTGAACAGGATAAAACGACGACCTACAAATTTTCGCTGCGCACGACATCAAATACAGTTTACTATGCTCTTCCTGAGCCTTCTGGCTCACCCCTATGGAGCTCTCCAGTCCGAATTGCAATTTTCGTAATACCGGGGACTGTGTTTGTCCTAGTAGTGTTTGTCTTGCTTGCCAAAGTGATTAAAAGAAAAAGATGCACTAAACGAGGATCCCGCGGGCCTTTTTTGTGCCAGGCCGAACGCGGAACCCAGCATCCCCGATGTCCTGAGTCAAGAGAATACTGGATTGACAGACAAGCTCCACGTGCATTGAAAAGCGCTGAGACAGACGACTCGGTTCTAAGCTCTACCCAAAACACAATAATAAGCTATCTCTCAGAAGACATCAAGTCTGTACGCGAAGTCTTTCCAGAGGACCAGAGCATGCACATGTGGTCAGAGCTCCAGTTTGTTACAAGTGCGTGTGACAACTTTGACAGCACCGGGGGAAAACTAACCCACCCAAATTCCGATATCTGCATCAACATTGAGCCTGGAACATTCCCCCACGGAAAACAACAGCCTATCTTTTTCCACGTGGTTTACAATGACACGTATGTGATTCGGGACATCCCGGAGACAAACGAGAGGACGCTCATTTCTCCTGTGATAAAGTGCGGTCCCGATGACATCAATCCTCAGAAAGCGATGGAGATTGTTGTTCCTCATTGCCTCTACGTAGACGATGTGAAAAAAGGATCTATTGCAGTGTACAGATGTGAGCAGTTTACTGACGAAGAACCACAAAGTTGGGAGAAAATCCCATCCTCTTCTGAAAGATCCTGTCATTCCAAGGCTTGGTTTTCGATTAAAAAGGACAGCATCATCATCAAAACGAAGGTTTTTTCCATTTGGAGCATCTTTGTTTGCGGTGGTGGTGGACCAAAGAGAAAGAGAGTAACTGCGTTTGCCAGCAAACCGAATCCAGAAACCAATCTCATTTCTCTTCGCTGCTACATCTACGGGGACAATGAAGATTCCAAGAGGAAAGTAGAGCGCATCGATAAGGAGCGCTTTCCTGGAACTAGAACAGCAGCTTGTGAAAAACCTTTCAAGCTTTTCAGCGACAATCAAGACATCAATGTGTGGCTTGATAAGAACGCCATTACAGAGAAAGGATGGATGCTTGATGAAACTCCTGCCTCACAGATCTACAGTTATGAGATGGCATACAGGAATGGATTCAGGTCCAAATATGCTTGTGAATTCTCAGTGAAGCCCATTGCAGATTGTTCGACTCAAGTTGCAGACTTCTCCTGCTTGTTGTACTTTCAACAGACTGGCCATACACAGGACTTTATTTATGTCAATCCAGGGATCTCTTTTCTTAAACCCCCGCCAACCTTAGATGACAAAGGAAATAGCAGCAACGGCGACCAAACTCAACACTCTTTTAGTGAAACCTCAGACACAGACCCTTCAGGCTTTGTAATACCAGAACATTTGCGCAGACGTTACGACAAGCCCGTTACAGAACAGGACTGTGTTTGTATATGCGATCATATTGTGGATTGGAAAATGCTTTTACGACATTTGAAGGTATCAGAAGGGATTATCAGAAATGTAGATGAAGATTACAGAAAGACAAACGAAAAATGTTATCAAGGGCTTTTGGAATGGAAAAGGACTCGGGCCCATGAAGCTACTATAAGAAATTTGTGTACTGCCTTGTGGTCTGTTCGTTACACAGAAGCGCTTGAAAAATTGTCTAGCCAAGATGTTGGCCCGACACTGCTGGACATCCCAGAAACTGTTTGAGCCGATTCACTTATGTGTAACTTGTGTGCAATTCGCATTTTTGACTCGACCGTCACCCGTACTCATTCGTACATAGATGGTCTACATGCCAGAAAAATAGCATGGTCGCCATGACGTCATGTGAAAACACTCAATAATTCACTTACCTCCGCTTTTATCGCTCCGCGTTTAGGCGCGCAATTTATGATGTATATAAGAGAGCCATTGATCTTTATTGTGTATAAGGAAAGAATAATTATGAATCCAAAAC

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001790 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00531 all species →	Death	Death domain	Domain	Interproscan
PF00020 all species →	TNFR_c6	TNFR/NGFR cysteine-rich region	Domain	Interproscan
PF00791 all species →	ZU5	ZU5 domain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001368 all species →	Domain	TNFR/NGFR cysteine-rich region	Interproscan
IPR000488 all species →	Domain	Death domain	Interproscan
IPR011029 all species →	Homologous_superfamily	Death-like domain superfamily	Interproscan
IPR037936 all species →	Family	Netrin receptor UNC5	Interproscan
IPR000906 all species →	Domain	ZU5 domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12582 all species →	NETRIN RECEPTOR UNC5	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0007165 all species →	Biological Process	signal transduction	Interproscan
GO:0005042 all species →	Molecular Function	netrin receptor activity	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0038007 all species →	Biological Process	netrin-activated signaling pathway	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for asel_s0437.g2.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.