Gene detail

Detailed information of asel_s0455.g4.t1 in Acropora selago

Genomic Location: sc0000455_pilon:17747...25505
NR annotation: XP_015768991.1, PREDICTED: BTB/POZ domain-containing protein KCTD5-like [Acropora digitifera]
Species Acropora selago · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

asel_s0455.g4.t1

TAAACCTTTCCTCATCAAAACGCTCTCAAAGTGCTGAGAAAGTGTAGATTTAGATCAGAGAAGCCAGGTGAATTTGCTCAAGTTAACTACAGCTAAATATAGACGGCTATTTTTAACCCTTTCGCCGACCAATTAGTTCGATTCACCGACACATTATCTCTCGGCCAATATATTGAGATCTACATACAACACGATGTGCGCAAGATGGCTGCTTCTAGTAACAACTGGGTCAAGCTAAATGTCGGTGGAACCTCCTTTTTAACGACAAAACAGACACTTTGTAGACATCCCAACTCTTTCTTACATAGACTGTGTGCAGAGGACCCCGATCTGCCTTCGGATAAGGACGAAAATGGAGCCTACATGATTGATCGCGACCCTCGCTATTTTGGACCTGTTTTGAACTATTTAAGGCATGGAAAGCTCATAATCGACAAAGATCTTCTAGAAGAAGGTGTTTTAGAGGAGGCTGAATTTTATAATATTGATCCACTTGTTAGACAAATAAAGGAAAAAATACAGTCCCGTGAAGCTCGTCTAAAACATCCCTTCCAATCAAAGAAACACGTATACAGAGTATTACAGTGCCATGAAGATGAACTTACGCAGATGGTTTCTACTATGTCAGATGGTTGGAGATTTGAACAGTTGATAAGTGTTGGAAGTAATTACAACTATGGAAGTGAAGATCAAGCTGAATTTTTATGTGTAGTATCAAGAGACATTTCTGATTCACAAGAGCAAGTTGCAGCAGGCAATGAGCAGAGCAACAAGGCAAAGACTCTAAGACAGAAAGGATTAAGAATGTAGAATCTTATTTAATCAGATATTGCAATATTTCTGATTGTTTCCCTCCTGAACCCCTACCCTATACCCCTTAGTTAGTGTTGCCACTTCTCCAAGGCCAATGGTGTGGAGTATTGGGGCCCGCAATGTAAATAAGCCATCTCCATGTTATCATGGTGGATTTATTTCACTTGAGCTAAGAAGGGGAGACATCTTGATGAtactatgattgttgttagttttattgtcattagccttattataataaattatcatcattGCTGGAAGAAAATATTTTTAAATCAACCTAATTTGTTGTCAGCCACTCTGATCTTAGTCTATCTTTGTTCTCGGACAATAATTATTGGCAATGAATCCAAGCTTAAGCAAAGTTGTTTTTTATGCCACAGCTGGCCACCAGAAGTGATTTAGTTGTTTGACGCTGTCACATTTGTATTTGTATCTGAAGTGTCTTTGCTTAAGCTTTCTAATAATTATTTTGTTATCGCACACCTTATGACACAAAAACAATGATACAGAAGTCAATAATAACATTGGCACAGTTTTAGCAGTTAAATAGACCATTATaaaaaaaaacacaaaaaaaaaaGATTTGGAATTTGATGTATAGCAAATACATGCAGCCAGCTAACAAAGTAGGTAACTGTCAATAGTTTTCTAGTTGCTTGGCCCATTGTTTTGGCTCGTTAGTGTTTTCCACACTTGTAAGTAGAGTAACAAATAGCTTACTGTAACAGTATTGAAGGACGCTGTGGTGTTGCTCTCTGGCTGCATTCTTTTTAGGTGATTAATTTATTATTGTGGTTTGCCAGTCACCTTCTAGTTGACTAACCAGAATGTACAAGAAGTACCAGTTCACTTGTGTGTTATTTTTTTTGCACTTAAACGCACTATTTCTCTTGCATCTAGTTTTTTTTTTTTAGCAACCTCGAAGTTTTGATATAGTTTGTAGAATTGTCACAGACTTATATTAAGTTGAAATTTTGACTTAGTGCTAAATGAGTTTCTTTTAATACAGTTTAGGAAAGTATTGTGCTTGTATTTTCAACTAGGTCCTTTATTACCTGGATTTTTCTCTTCTGGTGCTGTTACCTTTACATACTTCTTCCCAACCAAGTTAGAGAGCAATACTATAAGTTACGGCCCGTTTTTTTTTGTTCAATTTACCAAACTCTATAAATAAAAACTTGAAAAATGGGCCCTAACTTATAGTGACGTTTTACAAGATAACATGAGAAAGATATTATCTCTTGGGAGTTTATTCAGGAAAGAAAACACGCCAGAAGTCCAACAGGTCATACTCTCACATACTTTTTGGCTGTTAAACTGACTGTGTACTTTTGGAAGGACGTAATAATCTCATTTAAAATACCGAAGTGGTGGAAGATTCCCAAAATTGCTAAACTCACTGCTCTACTCTCCTACTTACTTAGTACTCCATAAGTTGAAAAACAAGCTAAGTGTATACTTGCTTACTTTTTTCTTTTTGTTAAAATAGAACCACACTTAGGTGAATTAATTTTCTTCTGAGATGATTGTTTTCTTTCAAAGTATAATTTAATTTGACAAACACTTGAAGAAAAAAATTTTCTAACCAGCGAATGCTGTTCAGTCTTGGCAAGCAACTTTTTATCATATCAACGTGTTGTACTCATCAAAGCCATTACTTTTGCATAGTTGTTTTTGATATTTTGCGGTTTCTTTCCACAGCACGATTCCTGGCACAATGTTTTTAATTAGAATTTTGTTCTCTCTTGTGAACCTCAATGTATTATAGTTCCCCACCTATTTCTCCTTATCATTTAGGGCATACTAGTCACCACACTCAATGACACCTTTGGTTGTGTTGTTTGTATTCGAGCTATATCATCATGCGACACAAAGTTTTAGTCAAAGAACAGCAGATTTTATGTATATTATGAAATGTCCAGAACAAGTTATTTACATTTTAGGCTAGAAGTTAAGTGTAGTGTTGTTTGTATTTAATGTAATGAAAAGCA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
A5PKG7	BTB/POZ domain-containing protein KCTD5 OS=Bos taurus OX=9913 GN=KCTD5 PE=2 SV=1
Q8VC57	BTB/POZ domain-containing protein KCTD5 OS=Mus musculus OX=10090 GN=Kctd5 PE=1 SV=1
Q9NXV2	BTB/POZ domain-containing protein KCTD5 OS=Homo sapiens OX=9606 GN=KCTD5 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001813 (this species only)
Ubiquitin family	E3\|E3 adaptor Cullin RING\|BTB · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02214 all species →	BTB_2	BTB/POZ domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR003131 all species →	Domain	Potassium channel tetramerisation-type BTB domain	Interproscan
IPR000210 all species →	Domain	BTB/POZ domain	Interproscan
IPR011333 all species →	Homologous_superfamily	SKP1/BTB/POZ domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR14958 all species →	POTASSIUM CHANNEL TETRAMERISATION DOMAIN CONTAINING PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0031463 all species →	Cellular Component	Cul3-RING ubiquitin ligase complex	Interproscan
GO:0043161 all species →	Biological Process	proteasome-mediated ubiquitin-dependent protein catabolic process	Interproscan
GO:0097602 all species →	Molecular Function	cullin family protein binding	Interproscan
GO:0051260 all species →	Biological Process	protein homooligomerization	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K21914	KCTD2_5_17; BTB/POZ domain-containing protein KCTD2/5/17	-	Ubiquitin system	ko04121	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.