Gene detail

Detailed information of asel_s0489.g2.t2 in Acropora selago

Genomic Location: sc0000489_pilon:9577...23055
NR annotation: KAJ7394766.1, PEX5- protein [Desmophyllum pertusum]
Species Acropora selago · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

asel_s0489.g2.t2

TTAAATTTCATTGAAATTTCAAATTGCCGTCCTTTGCTTTACTTGAATTTTGAATTATGTTGATACGGTGATGTGATAATCAAAGATTGAAAAACTTTATTTCTTTACGATTGCTTGCTGTTTGTAACTTGTGTGTGTATTATTTAAAGGCCTCCCGCTTTGTAAACAGCACCTCTCTATATAGTCAGGATCATTTTCATTCAACATCAATAATTTACTTGATAGCATCAAATATTGAAAATGGCAATGCGGGATTTGGTTGAGAGTGAATGTGGGAGTGCAAATCCTCTGATGAAGCTGGTGACACATTACACTCAAGATCAGTCTTTTCAACAGGATGGTCTTGTGCAAGAAAGGTTTGGCCATCACAGACAGTTGGCTGAAAGGGCATTCCATGAAGCTCAGCAAGATGAGCTGGTATCTGAGTTTCTCCATGATCCTAGAACACATGCACCACCACAATCATTTCGCATGGGAGATTTGCTTCATGAAATGCAAGAAATTGAGCTGAGGAATGCACATCACTCTCCTGTTAAAGCGCCTGGCATTGCTGATCTGGCATCTAGTGAGTGGGCTGCAGAATACATGTCATTTGAAGTGCAAAGAGCTGAAGAATGGTCAAAAGAATATGAGCAAGAAAGAAGATTACAGCCAGTAGCAGGAATTCATGACGGCTCAGCAAAGTGGGCTGATGAATACCTAGAACACATTAGTGACGTGGGACAGGAAGATTTGGATGATGCTGCATGGGCGAATGAGTACAAAGTTGACAGTGAAAATGCTGCGGAACTTTCTAAGACTGCCGGAGAGCTGATTGAAAATGCCACCGACCCAAAATTTGCCAACTCAAAGTTTATGAAGTTTGTTAAGAAACTAAGAGATGGTGAATACACAATTGAAAATAACCAGGTTATAGATGCTAAGACAGGCCAGGAAGTTACAGAAGAGAGTGAAACTTCAACTGAATGGGTTGACGAGTATGAGAAATTCAAAGCAAATGAAGCAGATGAATGGATCAAAGAATTAACGTCGGCAACGAATGTACAAAAGTCTGACACAGAATTTTGGGCCGACCTTGAAGGCGAGTGGAATGAATTGATAAGACGCGATGGAGAAAGTGATCTCTCTTGGTACAGAGACGGTGACGCAACATTGAACAAGGACTACACTTTTGAAGAAGATAATCCGTTAAAAGATCACCCCAATCCATTTGAAGAGGGATTGAAAAAGCTGAAAGAGGGAGATTTGATCAGTGCGATCTTACTTTTCGAAGCAGAGGTCAAACAGCGACCCGAGCACGCTGAGGCGTGGCAGTACTTGGGTACAAGTCAAGCCGAAAATGAACAAGACATCGCGGCAATTATAGCTTTAAATAAGTGCCTTGAAAAACAGCCAGAAAATTTAACAGCACTAATGGCCTTAGCTGTTAGCTATACCAATGAATCCATGCAGGCCCAGGCGTGCAATACCTTAAAAGCATGGTTAAAAGCCAATCCTCGGTATCGCAACTTAGTGCCGAATGAACCCGCAGAATCAGCAGCCAGTGCTCGGTCAAGGCTTGTGACGTCATCCTGGATGTCATCTGACATGTACAATGAGATTAGGGAACTCTATATCACGGCAGCTCAACGTTCCCCTGTCAATGATATCGACTCTAACGTACAGGTTGGTCTTGGTGTTCTATTTAACTTATCAGGCGAGTACGACAAAGCGGTCGATTGTTTTCAGGCCGCTCTCCAAGCAGTTCCTAACGATGCGTTGCTCTGGAACAGACTGGGCGCTACTCTGGCGAACGGCGGACGCAGTGAAGAAGCGGTTGATGCTTACAGACATGCGCTAAATCTCAGTCCAGGCTTCATACGGTGTCGTTATAATTTGGGCATCAGCTGCGTTAATTTGAATGCGCATAAGCAAGCAGTTGATCATCTGTTGACGGCATTGAATATGCAACGAAAGGGTTCCATCGAGTCAGCGGGCTCAGTCTCCACAATGTCGGACAATATTTGGTCGACAGTGCGCATGACATTGTCCCTTATGGGCAGGTCTGAGCTACATAAAGCGGTGGATACACGTGACCTGGATCATCTTAACGCTGTCTTTCCGTCGGAATCAACAGATGACGGCGCAGTAACTGTGTGACCGTACAGCGCACTGGCTCCCTGATTTTACGCATCTAGGAGCTGAAGGAGTCGTAAACAGAAAAGAAGCATGAAGCAGACTGCTCTTTACTTTAAAAGATGAAAGCCTTTCTTAGAGAAAGCGAGAGGGAATGAAAAAGCCATTGTGTGTTTCTTATTTTCCCTTCAATCTTAAGAAGCGAATTAAATGCTAGCCTTTGTAGCTGGTGGTTTTGTGGGACCGCGCGAGCGAGCGGGAAAATCACAAAGAAATTGGGAAAGGTATCTTTTTCTTCTTCTTCCTTTCCCTCCTCGCTGGCGCACTGAAGAAAACTGCGCCGCTATACAATGCAATTAATTATGAACTTTATCAGGCATGGAAAGTCATCAACGTATTTGAAGGAGAGTTTATTATAGAGGTCTGATAACGCGATATGCTGTTTGATTTATGGGTAATATGAATTTTTTTAATTGAGTTACGTTTCTGTATTGTTCAACCCAATTTAATCTGGGTGGCAACTTAATTGCAATAaatcagataaggattg

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
O09012	Peroxisomal targeting signal 1 receptor OS=Mus musculus OX=10090 GN=Pex5 PE=1 SV=2
Q2M2R8	Peroxisomal targeting signal 1 receptor OS=Rattus norvegicus OX=10116 GN=Pex5 PE=1 SV=2
Q1RMV0	Peroxisomal targeting signal 1 receptor OS=Bos taurus OX=9913 GN=PEX5 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003346 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13432 all species →	TPR_16	Tetratricopeptide repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR019734 all species →	Repeat	Tetratricopeptide repeat	Interproscan
IPR011990 all species →	Homologous_superfamily	Tetratricopeptide-like helical domain superfamily	Interproscan
IPR024111 all species →	Family	PEX5/PEX5L	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10130 all species →	PEROXISOMAL TARGETING SIGNAL 1 RECEPTOR PEX5	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0005052 all species →	Molecular Function	peroxisome matrix targeting signal-1 binding	Interproscan
GO:0005778 all species →	Cellular Component	peroxisomal membrane	Interproscan
GO:0005829 all species →	Cellular Component	cytosol	Interproscan
GO:0016560 all species →	Biological Process	protein import into peroxisome matrix, docking	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K13342	PEX5, PXR1; peroxin-5	-	Membrane trafficking	ko04131	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of asel_s0489.g2.t2 across 24 RNA-seq samples of Acropora selago. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

24Samples

0TPM > 0

1Conditions

0.0Max TPM

0.0Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
coral larvae	24	0	0.00	0.00

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study
SRR14308004	coral larvae	coral larvae	not recorded	not recorded	SRP315987
SRR14308005	coral larvae	coral larvae	not recorded	not recorded	SRP315987
SRR14308006	coral larvae	coral larvae	not recorded	not recorded	SRP315987
SRR14308007	coral larvae	coral larvae	not recorded	not recorded	SRP315987
SRR14308008	coral larvae	coral larvae	not recorded	not recorded	SRP315987
SRR14308009	coral larvae	coral larvae	not recorded	not recorded	SRP315987
SRR14308010	coral larvae	coral larvae	not recorded	not recorded	SRP315987
SRR14308011	coral larvae	coral larvae	not recorded	not recorded	SRP315987
SRR14308012	coral larvae	coral larvae	not recorded	not recorded	SRP315987
SRR14308013	coral larvae	coral larvae	not recorded	not recorded	SRP315987
SRR14308014	coral larvae	coral larvae	not recorded	not recorded	SRP315987
SRR14308015	coral larvae	coral larvae	not recorded	not recorded	SRP315987
SRR14308016	coral larvae	coral larvae	not recorded	not recorded	SRP315987
SRR14308017	coral larvae	coral larvae	not recorded	not recorded	SRP315987
SRR14308018	coral larvae	coral larvae	not recorded	not recorded	SRP315987
SRR14308019	coral larvae	coral larvae	not recorded	not recorded	SRP315987
SRR14308020	coral larvae	coral larvae	not recorded	not recorded	SRP315987
SRR14308021	coral larvae	coral larvae	not recorded	not recorded	SRP315987
SRR14308022	coral larvae	coral larvae	not recorded	not recorded	SRP315987
SRR14308023	coral larvae	coral larvae	not recorded	not recorded	SRP315987
SRR14308024	coral larvae	coral larvae	not recorded	not recorded	SRP315987
SRR14308025	coral larvae	coral larvae	not recorded	not recorded	SRP315987
SRR14308026	coral larvae	coral larvae	not recorded	not recorded	SRP315987
SRR14308027	coral larvae	coral larvae	not recorded	not recorded	SRP315987

Source: CnidoSite RNA-seq expression matrices (ASELA_TPM, StringTie quantification over 24 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.