Detailed information of asel_s0641.g5.t2 in Acropora selago

Genomic Location: sc0000641_pilon:39726...57522
NR annotation: XP_044171683.1, cleavage and polyadenylation specificity factor subunit 1-like isoform X2 [Acropora millepora]
Species Acropora selago · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
A0A0R4IC37Cleavage and polyadenylation specificity factor subunit 1 OS=Danio rerio OX=7955 GN=cpsf1 PE=3 SV=2
Q9EPU4Cleavage and polyadenylation specificity factor subunit 1 OS=Mus musculus OX=10090 GN=Cpsf1 PE=1 SV=1
Q10569Cleavage and polyadenylation specificity factor subunit 1 OS=Bos taurus OX=9913 GN=CPSF1 PE=1 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0002447 (this species only)
Ubiquitin familyE3|E3 adaptor Cullin RING|DDB1 · all ubiquitin genes in this species

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF10433
all species →		MMS1_NMono-functional DNA-alkylating methyl methanesulfonate N-termRepeatInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR050358
all species →		FamilyRSE1/DDB1/CFT1/CPSF1Interproscan
IPR015943
all species →		Homologous_superfamilyWD40/YVTN repeat-like-containing domain superfamilyInterproscan
IPR018846
all species →		DomainCleavage/polyadenylation specificity factor, A subunit, N-terminalInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR10644
all species →		DNA REPAIR/RNA PROCESSING CPSF FAMILYInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0005634
all species →		Cellular ComponentnucleusInterproscan
GO:0005847
all species →		Cellular ComponentmRNA cleavage and polyadenylation specificity factor complexInterproscan
GO:0006378
all species →		Biological Processobsolete mRNA polyadenylationInterproscan
GO:0005515
all species →		Molecular Functionprotein bindingInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for asel_s0641.g5.t2.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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