Gene detail

Detailed information of asel_s1011.g1.t1 in Acropora selago

Genomic Location: sc0001011_pilon:1...3458
NR annotation: XP_015763055.1, PREDICTED: uncharacterized protein LOC107342116 [Acropora digitifera]
Species abbreviation ASELA · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

asel_s1011.g1.t1

gcgctgaaaatggccacggtatcaagatgtacagaggagcaactcaacttcttcagggtttgtttcattaccactgaagagttaacgtacggtctgagaacaatcttcaaacaggaatgggacaaccgttacgcaactacacctggaaaatggaaagatgaggccaaaaacggacaagacttcaaaaacggggagtctccacgaaaccaagcaaaaaatcaagaactattagcaactatgatcaatggaaatagagccgaatgggattgcacaatgctgttttacgctatcctgtattccgattgtattgggcgtggtctgaattcagtcgtccggtcaaacgtagatgatctgaggaaattccgcaacgaagtcttcgctcatgtgcctcaaggccagatctccaagccaaagtttcaaagtgcaatcgccaaagtccagggtgcgtttcaagctcttggcctgtccactgcaaagatccaagaaatcagaaatcaagcaaattttcccaccatccatttggataaggtcttaaaagaggttgacaggctcaagcagcaagtcaaagtccttgaagatcaattgcagagtgaaacaacgccgttttgcattcttccgcctaagccctcgcacgatgttgcagcacgaaatgatgaggtggctaacataactaaagtgttaaaacaactaaaagagaccaacgagagccgactaaggtacctttatatctcaggaaatcctggaagtggcaaaactcagttggctagcttggtagcagagcaaattttcaagcaaagcacggatgcatttgtgatgactttgaatgctgcaaaccttgacaggcttctagattcatatgtctcttttgcgcgacatctcaagtgtccagagtatgcagttaccactactctagatgacaaaaacctgaagacagaggagaagatcgctttcataaagtctttagctggtgccaaagtggagctttacgcgtcgtggctgttgttagttgacaatgtcgtcagcatacctgaggtgcatgctcatttgccagacccaggaaacagccactggagtaaaggtcaattactgatcacatctcaggacaccacttctatccctccagataacagtttcactaaacaaatgtctgtaagcaagggcatggcgccatctgaagccacctccttattggccaccatctctggtatcgctgacgatgagacagcgaaaaaagttgcacgtgcattagattatcaacctcttgccttagcaagcgccgctacgtttgtaaaacaactttgcgacagtaagccatcatcgaacttgggctggagagactttctcgagaaacttgacgaaggcaaactaaaaaacactgagacctttctttcaaacacaaatgcaagttatccatattctatgaccactgcaattgcatcagccgtggaaaagtcgatctcatccgacatagttctaaaacatgcattcaatgttatttctgtttttgcgccacaaccattaaaccttgacattgtaaccaactacattcagaaggccgagcagaatagcgaagtgagcacaggaggcgagtttaaggacaaagatgtgattggtttgaggattcgcaaaagttcgctcctgttagttgaagaagacaacaatgaagtctacgttcgcatacatcaagttatttgttatgtacatttcgacttgaaagcagcaaaacgctttgctagtttagctctaaagttaatatcccgcgatagtatgcttgatcacgtgtatgcagcaagggctcattctctcatggaccaagtactgtttgaggaaggaaaacgtcacttcgaactctctctagctcttcagcttcaattggtagggtctaaacattctgatgtcgcgagttcttacaacaacttagggaatgtactcgaacatcaaggtgacctgaagaaagcaaaggagtatcatgagtgtgctcttgctattaggcaacaaactttggggcctgaacatcctgacgtcgcaatttcgtatagcaacttagctactgtacttcgtgatcaaggtgacctgaagcaagcgaaggagtataatgagcgtgctcttgctattatgcaacaaactttggggccgcaacatcctaatgtggcacgttattataacaacttagctgctgtacttagtgatcaaggtgacctgaagcaagcaaaggagtattatgagcgtgcttttgctattaggcaacaaactttggggcctcaacatcctgatgtcgcaagttcttataacaacttagctaatgtactgaatgagcaaggtgacctgaagcaagcaaaggagtatcatgagcgtgctcttgctattaggcaagaaactttggggcctcaacatcctgatgtggcacgttcttataacaacttagctaatgtactgagtgagcaaggtgacctcaaggaggcaaagaagtattatgagcgtactcttgctattatgcaacgaactttggggcctcaacatcctgacgtcgcaacttcgtatagaagcttagctactgtacttcgtgatcaaggtgacctgaaccaagcaaaggagtattatgagcgtgctcttgctatgacgaaagaaactttagggcctcaacatcctgatgtcgcaagttcttacaacaacttagcgaaggtacttagggatcaaggtgacctgaagcaaacaaaggagtatcatgagcgtgctcttgctattacgcaacaaactttggggcctcaacatcctgatgtcgcaagttcTtataacaacttagctaatgtacttcgtgatcaaggtgacctgaagcaagcaaaggagtatcatgagcgtgctcttgctattaaagaacaaactttggggcctcaacatcctgatgtcgcaacttcttataacaacttagcGaatgtacttAgtgGtcaaggtgacctgaagcaagcaaaggagtatcatgagcgtgctcttgctattaggcagcagactttggatcctcaacatggcaatgtttgtaggttgctataa

Transcript

asel_s1011.g1.t1

agcgctgaaaatggccacggtatcaagatgtacagaggagcaactcaacttcttcagggtttgtttcattaccactgaagagttaacgtacggtctgagaacaatcttcaaacaggaatgggacaaccgttacgcaactacacctggaaaatggaaagatgaggccaaaaacggacaagacttcaaaaacggggagtctccacgaaaccaagcaaaaaatcaagaactattagcaactatgatcaatggaaatagagccgaatgggattgcacaatgctgttttacgctatcctgtattccgattgtattgggcgtggtctgaattcagtcgtccggtcaaacgtagatgatctgaggaaattccgcaacgaagtcttcgctcatgtgcctcaaggccagatctccaagccaaagtttcaaagtgcaatcgccaaagtccagggtgcgtttcaagctcttggcctgtccactgcaaagatccaagaaatcagaaatcaagcaaattttcccaccatccatttggataaggtcttaaaagaggttgacaggctcaagcagcaagtcaaagtccttgaagatcaattgcagagtgaaacaacgccgttttgcattcttccgcctaagccctcgcacgatgttgcagcacgaaatgatgaggtggctaacataactaaagtgttaaaacaactaaaagagaccaacgagagccgactaaggtacctttatatctcaggaaatcctggaagtggcaaaactcagttggctagcttggtagcagagcaaattttcaagcaaagcacggatgcatttgtgatgactttgaatgctgcaaaccttgacaggcttctagattcatatgtctcttttgcgcgacatctcaagtgtccagagtatgcagttaccactactctagatgacaaaaacctgaagacagaggagaagatcgctttcataaagtctttagctggtgccaaagtggagctttacgcgtcgtggctgttgttagttgacaatgtcgtcagcatacctgaggtgcatgctcatttgccagacccaggaaacagccactggagtaaaggtcaattactgatcacatctcaggacaccacttctatccctccagataacagtttcactaaacaaatgtctgtaagcaagggcatggcgccatctgaagccacctccttattggccaccatctctggtatcgctgacgatgagacagcgaaaaaagttgcacgtgcattagattatcaacctcttgccttagcaagcgccgctacgtttgtaaaacaactttgcgacagtaagccatcatcgaacttgggctggagagactttctcgagaaacttgacgaaggcaaactaaaaaacactgagacctttctttcaaacacaaatgcaagttatccatattctatgaccactgcaattgcatcagccgtggaaaagtcgatctcatccgacatagttctaaaacatgcattcaatgttatttctgtttttgcgccacaaccattaaaccttgacattgtaaccaactacattcagaaggccgagcagaatagcgaagtgagcacaggaggcgagtttaaggacaaagatgtgattggtttgaggattcgcaaaagttcgctcctgttagttgaagaagacaacaatgaagtctacgttcgcatacatcaagttatttgttatgtacatttcgacttgaaagcagcaaaacgctttgctagtttagctctaaagttaatatcccgcgatagtatgcttgatcacgtgtatgcagcaagggctcattctctcatggaccaagtactgtttgaggaaggaaaacgtcacttcgaactctctctagctcttcagcttcaattggtagggtctaaacattctgatgtcgcgagttcttacaacaacttagggaatgtactcgaacatcaaggtgacctgaagaaagcaaaggagtatcatgagtgtgctcttgctattaggcaacaaactttggggcctgaacatcctgacgtcgcaatttcgtatagcaacttagctactgtacttcgtgatcaaggtgacctgaagcaagcgaaggagtataatgagcgtgctcttgctattatgcaacaaactttggggccgcaacatcctaatgtggcacgttattataacaacttagctgctgtacttagtgatcaaggtgacctgaagcaagcaaaggagtattatgagcgtgcttttgctattaggcaacaaactttggggcctcaacatcctgatgtcgcaagttcttataacaacttagctaatgtactgaatgagcaaggtgacctgaagcaagcaaaggagtatcatgagcgtgctcttgctattaggcaagaaactttggggcctcaacatcctgatgtggcacgttcttataacaacttagctaatgtactgagtgagcaaggtgacctcaaggaggcaaagaagtattatgagcgtactcttgctattatgcaacgaactttggggcctcaacatcctgacgtcgcaacttcgtatagaagcttagctactgtacttcgtgatcaaggtgacctgaaccaagcaaaggagtattatgagcgtgctcttgctatgacgaaagaaactttagggcctcaacatcctgatgtcgcaagttcttacaacaacttagcgaaggtacttagggatcaaggtgacctgaagcaaacaaaggagtatcatgagcgtgctcttgctattacgcaacaaactttggggcctcaacatcctgatgtcgcaagttcTtataacaacttagctaatgtacttcgtgatcaaggtgacctgaagcaagcaaaggagtatcatgagcgtgctcttgctattaaagaacaaactttggggcctcaacatcctgatgtcgcaacttcttataacaacttagcGaatgtacttAgtgGtcaaggtgacctgaagcaagcaaaggagtatcatgagcgtgctcttgctattaggcagcagactttggatcctcaacatggcaatgtttgtaggttgctataacaacctagctaccgtttataaatatcaagctgaact

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000117 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13181 all species →	TPR_8	Tetratricopeptide repeat	Repeat	Interproscan
PF13424 all species →	TPR_12	Tetratricopeptide repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR019734 all species →	Repeat	Tetratricopeptide repeat	Interproscan
IPR011990 all species →	Homologous_superfamily	Tetratricopeptide-like helical domain superfamily	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR002151 all species →	Family	Kinesin light chain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45783 all species →	KINESIN LIGHT CHAIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0005871 all species →	Cellular Component	kinesin complex	Interproscan
GO:0007018 all species →	Biological Process	microtubule-based movement	Interproscan
GO:0019894 all species →	Molecular Function	kinesin binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for asel_s1011.g1.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.