Gene detail

Detailed information of asel_s1234.g1.t1 in Acropora selago

Genomic Location: sc0001234_pilon:4688...24462
NR annotation: XP_044177507.1, LOW QUALITY PROTEIN: uncharacterized protein LOC114966094 [Acropora millepora]

Gene Structure

More details in Jbrowse

Sequence

CDS

asel_s1234.g1.t1

GTCCTCGTTTTCTGCACAGTTCAGCTGCTTTTGCTGCAGGGGTACTATACCAAAGCGACTTCTTTTCAAGCAGGAAAGGTTAATATATCGGACTTAACACAAAACAACCACGGTTGTCAATCGGTGTCGTTTACAGCAGCATTCCAGGGTCGGGGTAGTGTGAAGGTGATTGCGACTGTAAGCCACGGAAACGAGCACACCAAGATTCACGATCCAGCAGCACTATGGGTCAAATCTGTGACAACTTCAGGTTTTGACGTCTGCGTGCGTGAGACGGGGCGAGGCTCCAACGGTGCGTCTGTTGTGAGCTGGTTGGCGTTTCAAGGATCACATCAAGGCACATACTCGGGAATTGAACAATTTGATGACTTCACCTCCAGGACGCAATGCAAGAAAATATCCCTGAGCGGTCGTGCCAGCACCAGTGGAAGACCCCAAGTATTTGCCACCGTGCAGCATCAATATTCAGACAGACACTTTGATGCTATGAATGTTTGGGTTGAGGAAATTTCTAACTTTGGATTTGTGGTCTGCTTGAGGGAATTGATGACGTTTGATGGAGTTCATTCCGGTCTCCAAGTGCACTGGTTGGCATATGACGATTTACCACCCTCCTGGAACTTTACAAAACGAGGAAAACTTCATTTCTCGGGACTTGGACCACCTCCCAAAGAAACTAATTATGCTTTCTGCCAGGATCTGAGGTTCAAGGAGCCATTTTACGTTCCACCCACTGTCCTTGCCTCAGCCAGCCATGACAATATAACCAATGCACTAAGGGATAAATCAGGTGGTCTCTATAGTAACGCTTTGAATGCTTGGGTAGAGGAAGTAACACACTCTTGGTTCAAAGTGTGCGTGAAAGACAGCCAGGGCCTAAGCAACTCACACAACCCCATAACTGTGCACTATATTGTAATAGGAGATCTTGACCCTTGCAATAATATTACCTGTGAATACCATGCCATTTGCAAGGCGTTCAGTGCCTTCGATGCCCGTTGTCTATGCGACGACAGCTGTCCTTCTTATGAGGAGCCTGTTTGTTCTTCCAATTCGACCACATTCAAAAACAAGTGCCTCTTTTATCTGGACGCCTGCACACGTAGAAGTAACCACACCCTCTATCATCCAGGAAGTTGTACAGGCTTCCCGGTCAAGGCAGGACGAGTTGCCTTGACACGGCAAATGCAGTGGGCAGAAACCGCTTGTGAAATAGTGAAATTCCCGCCATTTTCATTCTACCCAGACAAAGAGGTTCACGTGCAGATAACAACAAACCATTGGAACATTAGCATAAACAATTACGTCCACGAGGCTACAGTGTCGTGGGTTCAACTTGTCAATTATGAGGGCTTTGAGGTTTGCGTGACTTGTGCTGGAAGAAACGACCGTGCCACCCAAGAATTTGCAACAGTAGATTGGATGGCTTACCAAGGGGCACCGGATGGAGGCGTGTCTGGTAAAACTCGCATGCCGCATTGGTGGACTGGAACAAAATGCAAGAAAGTTGCATTTCCACAGCACAAATTTAGTACCGCCCCTACGATCTTGGTCACGGCAAACCATGTGAGCGTCTCAAACAAGCACGATGCTGCAAGTCTGTGGGTTGAAAACGCTACCAGTTCATCTTTTTGCATCTGCCTTCGTGAACTGCAGAACTATGATGGCTTTCACGAGGATATATTTGTGACTTGGATGGCTTTCGGAAAAATTCATCGTCCGTTGTTTACCGAGAGCAAAAATGTGTTCTTTCCTAATAATGGCTCCCTTTCTACATATTACAACGGTGCATTTTGTGAGGACTTGCAGTTTGAAAAAAATTACAGCTCTCCGCCAATAATAATGATAGCGGTCCGACACTACTCAAGCGGCGACAATCTACCGCCAAAGTATATTTCTCTTACAGCCTGGATAGAGTACATCAGAACCAATGAATGCCGCATTTGTCTAAAGGAATTGTTCGCTGACCGTCACGATCCTGCTGTCTTGTCTTACACGATCCTTGGAGAGATATGCAAGCCTGGCTGGTCATACTTTGGCGGCATCTGCTATTTAACCAGCAAGATATGCAACACATGGACAGAGGCTCAAAAAGCTTGCAACTCTTACCATGCCAACCTTGTTAGGATCAGAAACCAGGAAGAGAATGTATACGTACAGCATCGCCTGAATGGCGCCAAGGGGTGGATCGGATTGACTGACTCAAGAACAGAAGGGACTTTTGAGTGGGCAGATAATCAAACGGTCAACTTTACTTACTGGGCAGAAAATCAACCAAACAACTTCAGAAACGAGGACTGCGTTCACACCTTGGGAGTCCGCCACGGATTTAAGTGGAATGATGTGGACTGCAGTAGCTGTCGCAACTACACTTGTTCAGAAGATTTGGATGAATGCAACGAACATAACAACAATTGTCATGCAAACGCTTTTTGCATCAACACATTTGGATCCTACGAGTGCGAATGCTCTGCAGGATATACTGGTGATGGCAGGAACTGCACAGatattgacgaatgttcctcatctcacttgtgtgatagcaacgctacgtgtaacaattcctacgggtcatacatctgcacctgtgacagcggCTACACTGGAGATGGACGCAATTGTAAAGGTGGACTAGACGACTCCCGCATTTTGTCGGGAGACACGAGCAAAATTACGCAGCTTAATACTTGGCTTTCGCCTCACTTACGGAACTCGTTGAAAAgttattgggcactttgctggagggcttccactcatggttggagttcacagacatttcacagaaactgtgatggaaggggaccaaccgtgaccattattagagtcggcagctatatttttggaggatacacggacaaatcgtggcgatgtatgaatgatttcttttcaCTAGATAACTGTGTCTCAAAAGGGCTAGAATAA

Transcript

asel_s1234.g1.t1

Protein

Uniprot

Uniprot term	Description
Q9JJS0	Signal peptide, CUB and EGF-like domain-containing protein 2 OS=Mus musculus OX=10090 GN=Scube2 PE=1 SV=1
Q9NQ36	Signal peptide, CUB and EGF-like domain-containing protein 2 OS=Homo sapiens OX=9606 GN=SCUBE2 PE=1 SV=3

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF07534	TLD	TLD	Domain	Interproscan
PF00059	Lectin_C	Lectin C-type domain	Domain	Interproscan
PF07645	EGF_CA	Calcium-binding EGF domain	Domain	Interproscan
PF12947	EGF_3	EGF domain	Domain	Interproscan
PF07648	Kazal_2	Kazal-type serine protease inhibitor domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000152	PTM	EGF-type aspartate/asparagine hydroxylation site	Interproscan
IPR000742	Domain	EGF-like domain	Interproscan
IPR006571	Domain	TLDc domain	Interproscan
IPR018378	Conserved_site	C-type lectin, conserved site	Interproscan
IPR037221	Homologous_superfamily	H-type lectin domain superfamily	Interproscan
IPR001304	Domain	C-type lectin-like	Interproscan
IPR016187	Homologous_superfamily	C-type lectin fold	Interproscan
IPR016186	Homologous_superfamily	C-type lectin-like/link domain superfamily	Interproscan
IPR002350	Domain	Kazal domain	Interproscan
IPR049883	Domain	NOTCH1 EGF-like calcium-binding domain	Interproscan
IPR001881	Domain	EGF-like calcium-binding domain	Interproscan
IPR024731	Domain	EGF domain	Interproscan
IPR036058	Homologous_superfamily	Kazal domain superfamily	Interproscan
IPR009017	Homologous_superfamily	Green fluorescent protein	Interproscan
IPR018097	Conserved_site	EGF-like calcium-binding, conserved site	Interproscan
IPR009030	Homologous_superfamily	Growth factor receptor cysteine-rich domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12916	CYTOCHROME C OXIDASE POLYPEPTIDE VIC-2	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005112	Molecular Function	Notch binding	Interproscan
GO:0007219	Biological Process	Notch signaling pathway	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005509	Molecular Function	calcium ion binding	Interproscan