Gene detail

Detailed information of asel_s1426.g1.t1 in Acropora selago

Genomic Location: sc0001426_pilon:772...6090
NR annotation: XP_044175290.1, LOW QUALITY PROTEIN: uncharacterized protein LOC114961454 [Acropora millepora]

Gene Structure

More details in Jbrowse

Sequence

CDS

asel_s1426.g1.t1

ATGCTGAATATAAATGGTCCTTTACAGATAGGAGGTGTATCGACAAAAAATCTTTTATATCCAGAACTATCCATTACAAGTTACAAAGGCTGCATTCGAAATGTGATGAGTCAAGGCAAATACTACGATCTCAAAGCTCCGTCTCACATGGAAGGCACCAAAGAGGGATGCCCAAGGATGGACCAACATTGTAACCGGCATGATTGCGACCCTCGTGCAACATGTGTACCATCACGAGCTGGTCACTCTTGCTCCTGTCCCTTTGGTTTGACCGGTCACAATTGTGGACAAAAAACACTCCCGCGGTCCTATGATAACGGCAGTTTTACTTGGTATGTGTTCAATTTACACGAGTTCGTGTATGACCCGCGGGAAACAAAGATCCGCATCCAGATCCGAACACGTGATCCCGACGGCGGTGTATTGATGTTTAACGATGGAAGCCAAGAGGGCCGCTACAGTTTGTTAGAGGTGGTACCATACAACATCGACGGTGAAGGAGATAGGGGTCTGATTGTCACATACACCCTGGGATCAGGCAATGGCCAACGGCCTGCAATGTTACAGCTGACCGGTGTGAATGTAGGCGACGGTCAGTGGCACAATATAAGTGTTGTGCGCGAAAGAAGTATTGTGACGCTCTCCGTGGACAGTGATGAGGATGGATATTCAGTGAATAAACATCTTGGCGAAGAACACGCATTTTTTGAATTGGATCCCACAAGAACATTTGTTGGCGGACTAGAGTCTCCGATCTTGTCCCGCAAGGGTCTGGATACGGACTTTGTTGGCTGTGTTAATGACGTGCAATTCAATGGCTATCCGCTGTACGATTACGATGGAAACAGCTTTGTGCGCGACGCTCGATCCATAGGTGTCAGCGAAGGCTGCAGTTCAACTCCCGTATGTAAATCAAGTCCTTGCGTTGCCTCGGAATGGTGTCGAGACGTCTGGCGGAAGTTTGTGTGCTTGCCACGTCTTTGCACCTCTAAACCTTGTAAGAATGGCGGGAGGTGTCTGGAAGGCGTGGACCGCGATGGAAACAGTAGATTCCACTGCCAATGTCCAGGTGGATTTGAGGGAGCCCTGTGCGAGGTTGAGAGCTCTGTGGTCGTTGCGACCATTCCTAGTGTCACGTTTAAAAATGGCTTGATTATAGGTTTGTCCTTGCTGGTGGCAACGCTTGTTTTGTCTGTTTGCATTTTGATTGTCTTTGTTCGCCGCTCTCATCGCGCCAAACAGCGAAAGTCAGAAGAAGAACAACACTTTCAACCGGACAACGTGGCAAACTACCGGATCGAGGGTGGCGGCGAGGCGGACTTGGAAGAAGAGGACCATCTAAAAGACATCTTGAAATCTTTTGAAACTGCGGATTTTACTCCTTGTCAAAGTCGATTTAAGCTGTCAGGGAGCAACAGTGACCTAAAAGGATTTCCTGTTGTCATGGCCCAGATCAAAAGAGAGGGTGATGTAAGAAAAAGCAATGGAATACCCGGTTGCAAGTATGCACAGAAACCAGTCAAACCTGAAACACAAGATACTGACAGCTCGTTTTCTCAAAGGGGATCCGATCAGGAGCGTCCGGACTCGTCCTCGTCACCATCAGCGGTGTCGACTCCTGAACGGCGCAGGCGCGTTCGATCATCCAAAGGAGAGTTCTTTGAACGTCAGAACCCCGAAGGGGAAGAAGGGGTGGTAGATATCAGCCCTACTCGGAAATTAACGGAGATCTTCGGATTGAACGAGCAAGAACAGGAAGGGATGCGATCGCCGCCCGAAGGATTTTCGTCACCAGAGAAGTTTTCAAGTCTTAATAAAAGAGAGCCTGGGAACGGCGCCTCTTTGCAGAGACCAGCAAAAAAACAAGATTGTAACAACTGCGAGCAAAATGGAGCACACTCTTACTTACCATCAGAGATGGAGAACCTACCGAAGAATTCATTTGGACTGGAAAATCCATTATCCCGACCCATCAGTGATATCTGTTGCAAATTGAATGGAAATGCCGACCTCCCTGTCGTTCAGCGGCGTTCTCTTTCACCCAAGAAGTCTGCACAGTGTTGCTATCCCAGGGGCGTGCCACCTCAAGCGGGAACCTTCCTTCCAGATGATGCTATGCAAAGGTTTTACTTTGAAGGGTCGGGATCCCCTACCATCTCTCTTAGTACCTTGGGAGATAATTCAACTGAATCAGAGACTGATGAAAGTTATGAGTATATGAATCACATGGGAGAAAAGTTTAACAAGCTTGCAAGGATGTATGGAGTTGCACCCTCGGTTAAGTTCAGCCCTCATGATAAATTCATTGGAGAATAA

Transcript

asel_s1426.g1.t1

GATGCTGAATATAAATGGTCCTTTACAGATAGGAGGTGTATCGACAAAAAATCTTTTATATCCAGAACTATCCATTACAAGTTACAAAGGCTGCATTCGAAATGTGATGAGTCAAGGCAAATACTACGATCTCAAAGCTCCGTCTCACATGGAAGGCACCAAAGAGGGATGCCCAAGGATGGACCAACATTGTAACCGGCATGATTGCGACCCTCGTGCAACATGTGTACCATCACGAGCTGGTCACTCTTGCTCCTGTCCCTTTGGTTTGACCGGTCACAATTGTGGACAAAAAACACTCCCGCGGTCCTATGATAACGGCAGTTTTACTTGGTATGTGTTCAATTTACACGAGTTCGTGTATGACCCGCGGGAAACAAAGATCCGCATCCAGATCCGAACACGTGATCCCGACGGCGGTGTATTGATGTTTAACGATGGAAGCCAAGAGGGCCGCTACAGTTTGTTAGAGGTGGTACCATACAACATCGACGGTGAAGGAGATAGGGGTCTGATTGTCACATACACCCTGGGATCAGGCAATGGCCAACGGCCTGCAATGTTACAGCTGACCGGTGTGAATGTAGGCGACGGTCAGTGGCACAATATAAGTGTTGTGCGCGAAAGAAGTATTGTGACGCTCTCCGTGGACAGTGATGAGGATGGATATTCAGTGAATAAACATCTTGGCGAAGAACACGCATTTTTTGAATTGGATCCCACAAGAACATTTGTTGGCGGACTAGAGTCTCCGATCTTGTCCCGCAAGGGTCTGGATACGGACTTTGTTGGCTGTGTTAATGACGTGCAATTCAATGGCTATCCGCTGTACGATTACGATGGAAACAGCTTTGTGCGCGACGCTCGATCCATAGGTGTCAGCGAAGGCTGCAGTTCAACTCCCGTATGTAAATCAAGTCCTTGCGTTGCCTCGGAATGGTGTCGAGACGTCTGGCGGAAGTTTGTGTGCTTGCCACGTCTTTGCACCTCTAAACCTTGTAAGAATGGCGGGAGGTGTCTGGAAGGCGTGGACCGCGATGGAAACAGTAGATTCCACTGCCAATGTCCAGGTGGATTTGAGGGAGCCCTGTGCGAGGTTGAGAGCTCTGTGGTCGTTGCGACCATTCCTAGTGTCACGTTTAAAAATGGCTTGATTATAGGTTTGTCCTTGCTGGTGGCAACGCTTGTTTTGTCTGTTTGCATTTTGATTGTCTTTGTTCGCCGCTCTCATCGCGCCAAACAGCGAAAGTCAGAAGAAGAACAACACTTTCAACCGGACAACGTGGCAAACTACCGGATCGAGGGTGGCGGCGAGGCGGACTTGGAAGAAGAGGACCATCTAAAAGACATCTTGAAATCTTTTGAAACTGCGGATTTTACTCCTTGTCAAAGTCGATTTAAGCTGTCAGGGAGCAACAGTGACCTAAAAGGATTTCCTGTTGTCATGGCCCAGATCAAAAGAGAGGGTGATGTAAGAAAAAGCAATGGAATACCCGGTTGCAAGTATGCACAGAAACCAGTCAAACCTGAAACACAAGATACTGACAGCTCGTTTTCTCAAAGGGGATCCGATCAGGAGCGTCCGGACTCGTCCTCGTCACCATCAGCGGTGTCGACTCCTGAACGGCGCAGGCGCGTTCGATCATCCAAAGGAGAGTTCTTTGAACGTCAGAACCCCGAAGGGGAAGAAGGGGTGGTAGATATCAGCCCTACTCGGAAATTAACGGAGATCTTCGGATTGAACGAGCAAGAACAGGAAGGGATGCGATCGCCGCCCGAAGGATTTTCGTCACCAGAGAAGTTTTCAAGTCTTAATAAAAGAGAGCCTGGGAACGGCGCCTCTTTGCAGAGACCAGCAAAAAAACAAGATTGTAACAACTGCGAGCAAAATGGAGCACACTCTTACTTACCATCAGAGATGGAGAACCTACCGAAGAATTCATTTGGACTGGAAAATCCATTATCCCGACCCATCAGTGATATCTGTTGCAAATTGAATGGAAATGCCGACCTCCCTGTCGTTCAGCGGCGTTCTCTTTCACCCAAGAAGTCTGCACAGTGTTGCTATCCCAGGGGCGTGCCACCTCAAGCGGGAACCTTCCTTCCAGATGATGCTATGCAAAGGTTTTACTTTGAAGGGTCGGGATCCCCTACCATCTCTCTTAGTACCTTGGGAGATAATTCAACTGAATCAGAGACTGATGAAAGTTATGAGTATATGAATCACATGGGAGAAAAGTTTAACAAGCTTGCAAGGATGTATGGAGTTGCACCCTCGGTTAAGTTCAGCCCTCATGATAAATTCATTGGAGAATAAGAGTACACATTTATCATCTTCAACTATTACAGGGGAGGGGTTGGCACAAGGCTAACATC

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01049	CADH_Y-type_LIR	Cadherin, Y-type LIR-motif	Family	Interproscan
PF02210	Laminin_G_2	Laminin G domain	Domain	Interproscan
PF00008	EGF	EGF-like domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000233	Domain	Cadherin, Y-type LIR-motif	Interproscan
IPR013320	Homologous_superfamily	Concanavalin A-like lectin/glucanase domain superfamily	Interproscan
IPR000742	Domain	EGF-like domain	Interproscan
IPR001791	Domain	Laminin G domain	Interproscan
IPR050372	Family	Neurexin-related cell adhesion and synaptic protein	Interproscan
IPR027397	Homologous_superfamily	Catenin binding domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR15036	PIKACHURIN-LIKE PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005509	Molecular Function	calcium ion binding	Interproscan
GO:0007156	Biological Process	homophilic cell adhesion via plasma membrane adhesion molecules	Interproscan