Gene detail

Detailed information of asel_s1903.g2.t1 in Acropora selago

Genomic Location: sc0001903_pilon:5666...9484
NR annotation: XP_029204945.1, cytochrome c oxidase subunit 4 isoform 2, mitochondrial-like [Acropora millepora]
Species Acropora selago · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P80971	Cytochrome c oxidase subunit 4 isoform 2, mitochondrial OS=Thunnus obesus OX=8241 PE=1 SV=2
Q9TTT8	Cytochrome c oxidase subunit 4 isoform 1, mitochondrial OS=Oryctolagus cuniculus OX=9986 GN=COX4I1 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0009036 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02936 all species →	COX4	Cytochrome c oxidase subunit IV	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036639 all species →	Homologous_superfamily	Cytochrome c oxidase subunit IV superfamily	Interproscan
IPR004203 all species →	Family	Cytochrome c oxidase subunit IV family	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10707 all species →	CYTOCHROME C OXIDASE SUBUNIT IV	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005751 all species →	Cellular Component	obsolete mitochondrial respiratory chain complex IV	Interproscan
GO:0006123 all species →	Biological Process	mitochondrial electron transport, cytochrome c to oxygen	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K02263	COX4; cytochrome c oxidase subunit 4	-	Non-alcoholic fatty liver disease	ko04932	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of asel_s1903.g2.t1 across 24 RNA-seq samples of Acropora selago. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

24Samples

24TPM > 0

1Conditions

1,322.7Max TPM

916.2Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
coral larvae	24	24	916.16	1,322.70

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR14308009	coral larvae	coral larvae	not recorded	not recorded	SRP315987	1,322.70
SRR14308005	coral larvae	coral larvae	not recorded	not recorded	SRP315987	1,087.96
SRR14308018	coral larvae	coral larvae	not recorded	not recorded	SRP315987	1,060.82
SRR14308008	coral larvae	coral larvae	not recorded	not recorded	SRP315987	1,055.57
SRR14308024	coral larvae	coral larvae	not recorded	not recorded	SRP315987	1,024.48
SRR14308019	coral larvae	coral larvae	not recorded	not recorded	SRP315987	1,004.73
SRR14308010	coral larvae	coral larvae	not recorded	not recorded	SRP315987	952.98
SRR14308011	coral larvae	coral larvae	not recorded	not recorded	SRP315987	936.60
SRR14308020	coral larvae	coral larvae	not recorded	not recorded	SRP315987	926.76
SRR14308017	coral larvae	coral larvae	not recorded	not recorded	SRP315987	914.89
SRR14308004	coral larvae	coral larvae	not recorded	not recorded	SRP315987	891.41
SRR14308007	coral larvae	coral larvae	not recorded	not recorded	SRP315987	887.41
SRR14308027	coral larvae	coral larvae	not recorded	not recorded	SRP315987	886.58
SRR14308021	coral larvae	coral larvae	not recorded	not recorded	SRP315987	880.36
SRR14308006	coral larvae	coral larvae	not recorded	not recorded	SRP315987	879.76
SRR14308025	coral larvae	coral larvae	not recorded	not recorded	SRP315987	869.06
SRR14308013	coral larvae	coral larvae	not recorded	not recorded	SRP315987	863.61
SRR14308023	coral larvae	coral larvae	not recorded	not recorded	SRP315987	851.52
SRR14308015	coral larvae	coral larvae	not recorded	not recorded	SRP315987	846.93
SRR14308012	coral larvae	coral larvae	not recorded	not recorded	SRP315987	842.78
SRR14308014	coral larvae	coral larvae	not recorded	not recorded	SRP315987	797.96
SRR14308016	coral larvae	coral larvae	not recorded	not recorded	SRP315987	782.66
SRR14308022	coral larvae	coral larvae	not recorded	not recorded	SRP315987	720.96
SRR14308026	coral larvae	coral larvae	not recorded	not recorded	SRP315987	699.34

Source: CnidoSite RNA-seq expression matrices (ASELA_TPM, StringTie quantification over 24 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.