Gene detail

Detailed information of asel_s1917.g2.t1 in Acropora selago

Genomic Location: sc0001917_pilon:5357...8375
NR annotation: XP_029187295.2, uncharacterized protein LOC114954797 [Acropora millepora]
Species Acropora selago · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

asel_s1917.g2.t1

ATGGCAATTCACTATGAACAGATCGATTTGCTGAATATTCGTTTGCATCATGAGCAAATAAGAAGAAACCCACAGGAAGGTGAGATTGTCGGAGATGGCCGGCTCATTGGAAACAACAGACTGCATAACGCAGTTCTGTTGAGTGACATCAACGCATGTTTACAGGAAGAGCAATGTCTATACGTCAACGGCGCAAATTCAAAAGGCGAGACACCTTTACATCTAGCAGCAATAAACACCTCTCAAGAAGGAGTAGTCTTGACTGAAATACTTTTGGCGAAAGGTGGAGATGTCAACATGAAAAATAATTGGGGCCAAACCCCTGTTCTTTATGCTGCTATAACTGATAGTTTCGAAACCCTGCAAAAGCTAATAGCTGCACCCAATATCGACATCGATGTTGCAGATCTTAAGGGGTACAACGCTCTTCACTGTCTGTTATCTTATCGTAAACCTCCAAGTATAGAAGAAGAGACTTATCATCTTGAGGATGATGAAGATCTAGACGTTGTATCCTCTGACCTGAAGCAGGCACTTTGTCAGTTCGTGAAGACTGGAATTAAGCTGAACTGTCAGACAAACTTTGGAAACAGTATTCTTCATTTGGCTGCCAGAAAAGAGGACAATACTCCATTGCTAAGATTCATTCTTCGCAACTTCCCAGAAATAGATTTGAGAAGCAAGAATCAAATGGGTGAAAATTTTTTGCATGTCTACGGAGATTGCGAAATTTTTGAAAACGTTTCTGAGTTGTTAGATGAAATTGCTTCAACAAGCCTACCTGTACTCAGACAGTTGTTAGCTGAAAAAGACATTTTTGGCAGAACGCCATGGGGTAACATGATAGACAACGCCAACTTCTCGGTAGATTTTCTCCAGAACGTATTATCATATGGAATATCCGTCAACACAGCCGATAATCTTGGGAATACAGCATTACATAGAATTGCAGGAGTATCAATGGGTATCACTTGCACAAGATTAATCGAGTTTCTCATACAGAGTGGTGCAGATGTTAACACTGAAAACGTTTACAATGAAACTCCGGGCTTTGTGTTGTTTCTTGAAAACGTTTTCGATGCCTTTGTGAAGAACGGGATGGATTTTGACAAGAGAAATAGATGGGGTCGCAGTCCTCTTGTTTCTATTATGAAACACAGACCAATACCAGATCTGCTCCGAAAGCTGATAAAGGAAACCAAAGCTGATGTGAACACAAAGGATATGCATGGATCGAGTGCCCTTCATTTTGCTGCTTACCATGACTATCCAGAGCAAGTGGAACTCCTGCTTGAACATGGTGCTGACAGAAACGCCGTTGATGACTTGCAAGACAGACCATTGGATACTGCCAGACGTCACTCCAGCTTCCACAGTTATCATATCTTGGAAATGGAAGATGGTGATGATGGTGGTGTTGCCTTTCAGGTGTCAAAGAGTAATTCAGTTGAGCAAATTCTCTTACACATGCCAAGAGCTATTCCGTTGTCCAGAATAACATCCTCGCATGACGTTAAAAATTTTCTCGGCCTCCAAGCAAGTTCGGATGAAATGATTAATCACCTCCTGACCAAGTATTATCGTAGACCTGCAGCAGTGTCTGAAGAAGTGGAAATGATTACAGCGGATGTCATTTCCCTTGTTGACAAACTATGTGCGAGAATTGGCGAGTATGATGCCAGATGTGAAATGTCAATATTTCCTACTGGTAGCTCGGCTGAAGGAACGAAAGTTGGTCGCCCAGACGAATTCGATTTCGCTTTATGCCTTGAGAAGTTAGTTGACAAGACAAACATTGTGATGACTGAAGAGTGCTTGCAAACCGGCTACGCTTGTCTTAGATTCAAAGACACTCCAGTTCCAAAGGAGTATCGGCACTTTTCTGACGCGGAGGGATACTTTTTAGCGATGCCACTCTTGGAACACTTGTTTAGATTCTTTAGACGAGCTCTCAATGAAACAAATCTGTGGCTGTCTGGAAATTTGTACTACAATTTCGAGGACAAGATAAAGGTCCTTCACGGTAAACCAGTGTTCAACTTCAGTGTTTATTGGATGGGATCAGTGTTCAAGCAGCTTAAGATAAGCATAGATCTGGTTCCAGCGGTGTACAAGAGAGGATGGTGGCCTCCCAACATCAACTTTAAGGAAATCCCTTTAGCAAATGAAAACGTGATCGATGCTGGATGCTTCCTTATACTTCAGACGCTAACACAAGACTTCGACAAGAAAAGACATCTACTAGATGACAGCATAAGTCACACTTGCAACATCTTTGAGGATGACGCAGATTTTGGTAAACGCAGAATGTTGCGCATCTCGGCCACTCCAGCAGAGATAGCGCTTGTGAAATCCTTACCAGAGAAATTTCGCCATGCTTATGCTCTTTGCAAAATAGTGAAAAGCAAAGTCGTATCCCCAGAAATTGAAGTTGATAGCATTCCAACAAATCGTTATTACCTGTTGAAGAAATTCCAGGAAAAGAAAGCATTGCCGATCAAGCCATCAGAAGTAATAAAAAGCTACATGTTGAAGAATTGTACACTTTATGCGTTGCAAGAAATGCGCCGAGGTTCAGAGCGAAGTTACTCAAAGTTGAACGTTTCTGAAATCGCTACAAAGTTATGCGAGTTCCTTTTGCAATTTGCCGATGAGAAATGGTTAAAGCCTTACTTTCTTCCTTTCTCCGACGTCTTTGAGATTGACGAACCAAAATCTGCTTACACTGACTTTTTGCTCCAGCTCAAACGCGAGTATAGCTTGAAGCTTATGCTTGGTTTATTAAAGCATCCGTTTCCCGAAGAATGCTTAGCGTCTAAAATAAAAAGGGTGCCTATGATGTGGCACTGA

Transcript

asel_s1917.g2.t1

GGAGACACCAGGGTCTGAATTTTGAACAACTTTTTTTCAGTGGGTCCTCTTCAACTGATTAGCAGTGAAAGAAGGATTTGGAAAAAGCAACACTTGAATTTATGCCCTCGTCGTCAGCTGAGCTGATTTTAACTTGCTGTCATGGCAATTCACTATGAACAGATCGATTTGCTGAATATTCGTTTGCATCATGAGCAAATAAGAAGAAACCCACAGGAAGGTGAGATTGTCGGAGATGGCCGGCTCATTGGAAACAACAGACTGCATAACGCAGTTCTGTTGAGTGACATCAACGCATGTTTACAGGAAGAGCAATGTCTATACGTCAACGGCGCAAATTCAAAAGGCGAGACACCTTTACATCTAGCAGCAATAAACACCTCTCAAGAAGGAGTAGTCTTGACTGAAATACTTTTGGCGAAAGGTGGAGATGTCAACATGAAAAATAATTGGGGCCAAACCCCTGTTCTTTATGCTGCTATAACTGATAGTTTCGAAACCCTGCAAAAGCTAATAGCTGCACCCAATATCGACATCGATGTTGCAGATCTTAAGGGGTACAACGCTCTTCACTGTCTGTTATCTTATCGTAAACCTCCAAGTATAGAAGAAGAGACTTATCATCTTGAGGATGATGAAGATCTAGACGTTGTATCCTCTGACCTGAAGCAGGCACTTTGTCAGTTCGTGAAGACTGGAATTAAGCTGAACTGTCAGACAAACTTTGGAAACAGTATTCTTCATTTGGCTGCCAGAAAAGAGGACAATACTCCATTGCTAAGATTCATTCTTCGCAACTTCCCAGAAATAGATTTGAGAAGCAAGAATCAAATGGGTGAAAATTTTTTGCATGTCTACGGAGATTGCGAAATTTTTGAAAACGTTTCTGAGTTGTTAGATGAAATTGCTTCAACAAGCCTACCTGTACTCAGACAGTTGTTAGCTGAAAAAGACATTTTTGGCAGAACGCCATGGGGTAACATGATAGACAACGCCAACTTCTCGGTAGATTTTCTCCAGAACGTATTATCATATGGAATATCCGTCAACACAGCCGATAATCTTGGGAATACAGCATTACATAGAATTGCAGGAGTATCAATGGGTATCACTTGCACAAGATTAATCGAGTTTCTCATACAGAGTGGTGCAGATGTTAACACTGAAAACGTTTACAATGAAACTCCGGGCTTTGTGTTGTTTCTTGAAAACGTTTTCGATGCCTTTGTGAAGAACGGGATGGATTTTGACAAGAGAAATAGATGGGGTCGCAGTCCTCTTGTTTCTATTATGAAACACAGACCAATACCAGATCTGCTCCGAAAGCTGATAAAGGAAACCAAAGCTGATGTGAACACAAAGGATATGCATGGATCGAGTGCCCTTCATTTTGCTGCTTACCATGACTATCCAGAGCAAGTGGAACTCCTGCTTGAACATGGTGCTGACAGAAACGCCGTTGATGACTTGCAAGACAGACCATTGGATACTGCCAGACGTCACTCCAGCTTCCACAGTTATCATATCTTGGAAATGGAAGATGGTGATGATGGTGGTGTTGCCTTTCAGGTGTCAAAGAGTAATTCAGTTGAGCAAATTCTCTTACACATGCCAAGAGCTATTCCGTTGTCCAGAATAACATCCTCGCATGACGTTAAAAATTTTCTCGGCCTCCAAGCAAGTTCGGATGAAATGATTAATCACCTCCTGACCAAGTATTATCGTAGACCTGCAGCAGTGTCTGAAGAAGTGGAAATGATTACAGCGGATGTCATTTCCCTTGTTGACAAACTATGTGCGAGAATTGGCGAGTATGATGCCAGATGTGAAATGTCAATATTTCCTACTGGTAGCTCGGCTGAAGGAACGAAAGTTGGTCGCCCAGACGAATTCGATTTCGCTTTATGCCTTGAGAAGTTAGTTGACAAGACAAACATTGTGATGACTGAAGAGTGCTTGCAAACCGGCTACGCTTGTCTTAGATTCAAAGACACTCCAGTTCCAAAGGAGTATCGGCACTTTTCTGACGCGGAGGGATACTTTTTAGCGATGCCACTCTTGGAACACTTGTTTAGATTCTTTAGACGAGCTCTCAATGAAACAAATCTGTGGCTGTCTGGAAATTTGTACTACAATTTCGAGGACAAGATAAAGGTCCTTCACGGTAAACCAGTGTTCAACTTCAGTGTTTATTGGATGGGATCAGTGTTCAAGCAGCTTAAGATAAGCATAGATCTGGTTCCAGCGGTGTACAAGAGAGGATGGTGGCCTCCCAACATCAACTTTAAGGAAATCCCTTTAGCAAATGAAAACGTGATCGATGCTGGATGCTTCCTTATACTTCAGACGCTAACACAAGACTTCGACAAGAAAAGACATCTACTAGATGACAGCATAAGTCACACTTGCAACATCTTTGAGGATGACGCAGATTTTGGTAAACGCAGAATGTTGCGCATCTCGGCCACTCCAGCAGAGATAGCGCTTGTGAAATCCTTACCAGAGAAATTTCGCCATGCTTATGCTCTTTGCAAAATAGTGAAAAGCAAAGTCGTATCCCCAGAAATTGAAGTTGATAGCATTCCAACAAATCGTTATTACCTGTTGAAGAAATTCCAGGAAAAGAAAGCATTGCCGATCAAGCCATCAGAAGTAATAAAAAGCTACATGTTGAAGAATTGTACACTTTATGCGTTGCAAGAAATGCGCCGAGGTTCAGAGCGAAGTTACTCAAAGTTGAACGTTTCTGAAATCGCTACAAAGTTATGCGAGTTCCTTTTGCAATTTGCCGATGAGAAATGGTTAAAGCCTTACTTTCTTCCTTTCTCCGACGTCTTTGAGATTGACGAACCAAAATCTGCTTACACTGACTTTTTGCTCCAGCTCAAACGCGAGTATAGCTTGAAGCTTATGCTTGGTTTATTAAAGCATCCGTTTCCCGAAGAATGCTTAGCGTCTAAAATAAAAAGGGTGCCTATGATGTGGCACTGAGCACTCAAGTGCGGCACATAGTTTCGGT

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0009155 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03281 all species →	Mab-21	Mab-21 protein nucleotidyltransferase domain	Domain	Interproscan
PF00023 all species →	Ank	Ankyrin repeat	Repeat	Interproscan
PF12796 all species →	Ank_2	Ankyrin repeats (3 copies)	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036770 all species →	Homologous_superfamily	Ankyrin repeat-containing domain superfamily	Interproscan
IPR002110 all species →	Repeat	Ankyrin repeat	Interproscan
IPR046903 all species →	Domain	Mab-21-like, nucleotidyltransferase domain	Interproscan
IPR024810 all species →	Family	MAB21L/Cyclic GMP-AMP synthase-like receptor	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24118 all species →	POTE ANKYRIN DOMAIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for asel_s1917.g2.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of asel_s1917.g2.t1 across 24 RNA-seq samples of Acropora selago. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

24Samples

21TPM > 0

1Conditions

4.8Max TPM

2.6Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
coral larvae	24	21	2.64	4.81

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR14308024	coral larvae	coral larvae	not recorded	not recorded	SRP315987	4.81
SRR14308026	coral larvae	coral larvae	not recorded	not recorded	SRP315987	4.43
SRR14308027	coral larvae	coral larvae	not recorded	not recorded	SRP315987	4.40
SRR14308022	coral larvae	coral larvae	not recorded	not recorded	SRP315987	4.13
SRR14308012	coral larvae	coral larvae	not recorded	not recorded	SRP315987	4.09
SRR14308015	coral larvae	coral larvae	not recorded	not recorded	SRP315987	3.93
SRR14308025	coral larvae	coral larvae	not recorded	not recorded	SRP315987	3.61
SRR14308014	coral larvae	coral larvae	not recorded	not recorded	SRP315987	3.41
SRR14308006	coral larvae	coral larvae	not recorded	not recorded	SRP315987	3.34
SRR14308016	coral larvae	coral larvae	not recorded	not recorded	SRP315987	3.01
SRR14308019	coral larvae	coral larvae	not recorded	not recorded	SRP315987	2.87
SRR14308010	coral larvae	coral larvae	not recorded	not recorded	SRP315987	2.62
SRR14308021	coral larvae	coral larvae	not recorded	not recorded	SRP315987	2.56
SRR14308011	coral larvae	coral larvae	not recorded	not recorded	SRP315987	2.52
SRR14308008	coral larvae	coral larvae	not recorded	not recorded	SRP315987	2.37
SRR14308007	coral larvae	coral larvae	not recorded	not recorded	SRP315987	2.31
SRR14308004	coral larvae	coral larvae	not recorded	not recorded	SRP315987	2.18
SRR14308013	coral larvae	coral larvae	not recorded	not recorded	SRP315987	1.84
SRR14308017	coral larvae	coral larvae	not recorded	not recorded	SRP315987	1.76
SRR14308020	coral larvae	coral larvae	not recorded	not recorded	SRP315987	1.55
SRR14308023	coral larvae	coral larvae	not recorded	not recorded	SRP315987	1.54
SRR14308005	coral larvae	coral larvae	not recorded	not recorded	SRP315987	0.00
SRR14308009	coral larvae	coral larvae	not recorded	not recorded	SRP315987	0.00
SRR14308018	coral larvae	coral larvae	not recorded	not recorded	SRP315987	0.00

Source: CnidoSite RNA-seq expression matrices (ASELA_TPM, StringTie quantification over 24 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.