Gene detail

Detailed information of asel_s1932.g2.t1 in Acropora selago

Genomic Location: sc0001932_pilon:3026...6415
NR annotation: XP_029206766.1, A-kinase anchor protein 17A-like [Acropora millepora]
Species Acropora selago · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

asel_s1932.g2.t1

AGAGTTCTATTTTAAATACCAAGATGGCAGCTCAAGTTTGTGATGATACATCCGAAGCGACGGAACTGTCCTCTATTAAACGCTTATATCTCAAGCCTGTTGCTAAGGTCGGCGTACATGTCACTTTGCCAGAGATTAAGGTCGCCGGTGTATCGATATCAAACTGGGAAGTCATGGAGAGATTAAAATCCATGATAGCTCCGGATCAGTTTGCCGTTTTGAGGGTCGTAGAATCATCGTTGGAGTTTATTCGCTTTGAGGGTGAAGCCGACGCAAAAAGTTTAGTCTCTAAATTTGTTTCGAAACTAGACGGAAAATTCATCAAACTCAGTGGCTTTGCGGATCCACTGAAAGTGCGAGCGGCAGAATCAAAGTTGAAATTTCCTTCTGCTCATGACTGGAACTCGTTTTTTAGAGAATCTGACGATTTAGACGAGCGGAACCCAGGTGAAAGACCAGACACTATCCAGATGAAAGGACTCCCTTGTAAGTGGTTTGCAGATGAGGATTCTCCTGGCAAACCAAGTGAGGAGGTACTGATAGCTGTGTTTCGTCGGTTTGGGAAAATACGTTGTGTAGATATACCTATTCTTGATCCCTACAGACAAAGGTTATCCAGAGGCAATAGTGAATTTCAGACGTTTTATTTCGGATCTCACTTGCACTTTGACGCTTTCATTCAATACAGCCAATATCAGGGATTTTCTAGTGCCATGACAGCATTAAAGGGAATGAAATTAATGTATATTTCTGAAGAAGGCAGAGCAGCAACTGCTAATATTCAGGTGGATTTTGACAGAACTTGCCATCTCTCCCAGAAGAATATTAAAAAGAGAGATCAGGAGCGGGACAGGTTGATTGAAATTGAACGGGCagaggaggaaagaaagaggatggaaaaagaagaggaggaaagaagaaaagaggaagaacggctggaagaagaaaggaaagaagctgagcgagaaagggtgcttcaagaggcagtaaaaaaaaaggaagagaggaagagagctaaggaggaaaggaggagacagaagCGTGCAGAAAAGGCTAGAAAAGAAATTGAACGTAGAGAACTGCAAAGACATTTAGAAAGAGAGAGGGAAAGGAAGAGGGCTGAACAGAAGGAATGTGCAATGCGGCTGTTGAAGGAACTACTGCAGCTTGCTGCCTCTGCAAAGGAGAAGGAGGATGAAGAAAAGAGGAAATTTGAAGAAGAGCAAAAGAAAAGGGAACAGGAATTAGAAATGTTGAGACAGATTGAAGAAAAGAAACGGAAACTAGAAGAAGAGCAGAGAAGACGAGAAGATGAGGAAAGAAGAAAGAAAGAAAAGCTAGAGGAACAAGAGAAAAATCTAAGAGACAGACTGATTCAAAATTTGAAAAGAATGGAGCAAAGAAGGGATGAACTGAAAAAGGAATTACTGCAGAGACAAATTGCAAGTAACATGGCGAAACTGAGTTCATTTGTACCTGGTGAACGCGCAAGAAAATGAATGGCCAAGTTTTTAGAGGCTTGCCAGGTTATGCAACAAGTTAAGAAAATAAAGGAAGTAATCAGGAGTGTGTGTTTAAATCTTTTAATGCAACCCCCTACTAAGCTACACAATGAAAGGGCAGAAACAGCATTGAAGTCTTTGTTTGAGAACAAATCTTAAGTTTCTTCCACTTTTTCTTGTCATTTTGTAAATCCAAAAATTACAGTATGTCGGCCAAAGTAACATTGTGCAGTTTTGTTTATTTGGCTTAGCAGAAAAGGAAGCTGTTGTTACCATGTGCTGTCTTCCTAGCGAACCCGGTTGAAGGCCAGTGGTGAGTGTGATGAAAGCCTTTTGGTTTTCACAGCCGTTTGAGATTCAGGAAAAAAAAATCTCAGGTAACACCTGACAGTACCATCCATAAAATAAACAAGATTCTCACTGATCAGTGGAATCAAAACTGAAATTAAGTGATCCCTCTTTAAACCAATCTGACTTCCAATCAAGGGCTCAGTCCTGAAGAAGACAACATTACACTGCATGCAAATCTTTATTAAAATTACTATCAAGGGTCATTATCAAGTGTACTTGCTCATGTAGTTGAGTGGGGATCCACTCAAAACCAGAAAGCTACCTGTACATTGAAGTATTACTTTAACAACTCAGAGAACTATAAAGCATGTTCATGTAGTGTCAGGGTGGCCATCTTTGTGACTCCAAGAGGGTGAACCACTCAATCACAATGTGACAAGTTACCTTCTTCCTGGGGAGAGAGGGAGGGGGCTGCAACTAGTCTCCTTCAAAAGCCATCTTGCAAAGGAGACTCCGCAGCAAGAGGAGAGGTGCCACTTCCTTTACAAGCCAATATATTTTACCCTCCTCCCCCCTAAAAAAGAGAACTTGCTCATAGGTAACACTGCCTTAAAGTCCCAAAGTACTTTCACATCAACAATTAACACCTATTCCTTCAAGTCTACTGGAAAGTTAAAATACCTCCACATATCAACTACATGAAAATGCTCCGTGGGTTAGCTTTGTACAACAATAATTAAATACAATATCATAATGTTTCTTCGTGAGATTTCTTCAAATTTAACTAAAATACCAGAGTCATGTATAAAATTACTATGTCAGCAGTTTTCACTGCATGTACTTAAAATAAATCACTAACATAACACTGTCACATGCTTTGAAAATTCCACATCACATCCCTGATAACAGAAGGAAAAATATAGCTGTCTTAATGGTCATAATAAATTATTATTTTCATCATCTGTTCGCCTTTTTGTCAAATTGAAGTCTTGAGCAATCTTCCTTGCTCAAGACATTGTAAGTTTCAATAATTTATTATCACTTCTGGTTACTGGCAATTATGCATAGAAAAATCAGAGATTTCATAAGGCGGCCAAAACAGGAGGAACAAAATCACGCAAGACAGTATTAACTAGGGTCATTATTTCTAGATTTTCCTGGAAATATAAAGAAAAGTGTGACAAACCCTGTTCAAAACTTGTGGTGGTTTTGGAATTCCAAGGTGCAAGTTGTTTGGAAACAAGTGCTCTGCAGTGTAGTCGTTGGTTAAAAAAAAAAGAAATTCAATCAACTATAGAAGATGAAGCCATTTACAGTGCTAGGATGTTTACAGTCCCTTCTCTATTCAGTCATTTTAGTAATGGCTGAAAAGTTTTAATCCTTAATGCAAGCAGAACATAACCTTGAAAGAGATTGCTTTGGGACTATTTTATTTATTTCTATTAATTTTACTGTATATCTAAAATGAACAAGAGTTTGGAAGATTTTCTGCATTCTCTTATTCCAAACTGTTGAATTAGTCCCAGAGCAGGTAAACTCTATGTTTTGTGCCTTTATACTCAGAAGCTTTGTCAGACAATGAAGGTGTGCAGTTTTT

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q02040	A-kinase anchor protein 17A OS=Homo sapiens OX=9606 GN=AKAP17A PE=1 SV=2
A2A3V1	A-kinase anchor protein 17B OS=Mus musculus OX=10090 GN=Akap17b PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0008204 (this species only) · gene tree & orthology

Pfam domain

No Pfam domain signature was recorded for asel_s1932.g2.t1 in Acropora selago.

InterPro

No InterPro signature was recorded for asel_s1932.g2.t1 in Acropora selago.

PANTHER

PANTHER term	Description	Source
PTHR12484 all species →	B-LYMPHOCYTE ANTIGEN-RELATED	Interproscan

Gene Ontology

No Gene Ontology signature was recorded for asel_s1932.g2.t1 in Acropora selago.

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K13169	AKAP17, SFRS17; A-kinase anchor protein 17	-	Spliceosome	ko03041	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of asel_s1932.g2.t1 across 24 RNA-seq samples of Acropora selago. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

24Samples

23TPM > 0

1Conditions

25.3Max TPM

7.5Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
coral larvae	24	23	7.50	25.27

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR14308009	coral larvae	coral larvae	not recorded	not recorded	SRP315987	25.27
SRR14308004	coral larvae	coral larvae	not recorded	not recorded	SRP315987	10.12
SRR14308018	coral larvae	coral larvae	not recorded	not recorded	SRP315987	9.84
SRR14308011	coral larvae	coral larvae	not recorded	not recorded	SRP315987	9.52
SRR14308012	coral larvae	coral larvae	not recorded	not recorded	SRP315987	8.85
SRR14308026	coral larvae	coral larvae	not recorded	not recorded	SRP315987	8.03
SRR14308027	coral larvae	coral larvae	not recorded	not recorded	SRP315987	7.47
SRR14308008	coral larvae	coral larvae	not recorded	not recorded	SRP315987	6.90
SRR14308013	coral larvae	coral larvae	not recorded	not recorded	SRP315987	6.89
SRR14308017	coral larvae	coral larvae	not recorded	not recorded	SRP315987	6.86
SRR14308022	coral larvae	coral larvae	not recorded	not recorded	SRP315987	6.85
SRR14308007	coral larvae	coral larvae	not recorded	not recorded	SRP315987	6.84
SRR14308024	coral larvae	coral larvae	not recorded	not recorded	SRP315987	6.65
SRR14308015	coral larvae	coral larvae	not recorded	not recorded	SRP315987	6.64
SRR14308021	coral larvae	coral larvae	not recorded	not recorded	SRP315987	6.59
SRR14308016	coral larvae	coral larvae	not recorded	not recorded	SRP315987	6.54
SRR14308023	coral larvae	coral larvae	not recorded	not recorded	SRP315987	6.33
SRR14308020	coral larvae	coral larvae	not recorded	not recorded	SRP315987	6.30
SRR14308006	coral larvae	coral larvae	not recorded	not recorded	SRP315987	6.20
SRR14308014	coral larvae	coral larvae	not recorded	not recorded	SRP315987	6.09
SRR14308010	coral larvae	coral larvae	not recorded	not recorded	SRP315987	5.95
SRR14308019	coral larvae	coral larvae	not recorded	not recorded	SRP315987	4.97
SRR14308025	coral larvae	coral larvae	not recorded	not recorded	SRP315987	4.32
SRR14308005	coral larvae	coral larvae	not recorded	not recorded	SRP315987	0.00

Source: CnidoSite RNA-seq expression matrices (ASELA_TPM, StringTie quantification over 24 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.