Gene detail

Detailed information of asel_s1932.g3.t1 in Acropora selago

Genomic Location: sc0001932_pilon:6417...9395
NR annotation: XP_015776427.1, PREDICTED: membrane-associated progesterone receptor component 2-like [Acropora digitifera]
Species Acropora selago · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q80UU9	Membrane-associated progesterone receptor component 2 OS=Mus musculus OX=10090 GN=Pgrmc2 PE=1 SV=2
Q5XIU9	Membrane-associated progesterone receptor component 2 OS=Rattus norvegicus OX=10116 GN=Pgrmc2 PE=1 SV=1
O15173	Membrane-associated progesterone receptor component 2 OS=Homo sapiens OX=9606 GN=PGRMC2 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003269 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00173 all species →	Cyt-b5	Cytochrome b5-like Heme/Steroid binding domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR050577 all species →	Family	Cytochrome b5/MAPR and VMP1 families	Interproscan
IPR001199 all species →	Domain	Cytochrome b5-like heme/steroid binding domain	Interproscan
IPR036400 all species →	Homologous_superfamily	Cytochrome b5-like heme/steroid binding domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10281 all species →	MEMBRANE-ASSOCIATED PROGESTERONE RECEPTOR COMPONENT-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005783 all species →	Cellular Component	endoplasmic reticulum	Interproscan
GO:0012505 all species →	Cellular Component	endomembrane system	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K17278	PGRMC1_2; membrane-associated progesterone receptor component	-	Exosome	ko04147	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of asel_s1932.g3.t1 across 24 RNA-seq samples of Acropora selago. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

24Samples

21TPM > 0

1Conditions

39.9Max TPM

21.3Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
coral larvae	24	21	21.34	39.92

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR14308008	coral larvae	coral larvae	not recorded	not recorded	SRP315987	39.92
SRR14308015	coral larvae	coral larvae	not recorded	not recorded	SRP315987	35.45
SRR14308011	coral larvae	coral larvae	not recorded	not recorded	SRP315987	31.78
SRR14308026	coral larvae	coral larvae	not recorded	not recorded	SRP315987	30.74
SRR14308024	coral larvae	coral larvae	not recorded	not recorded	SRP315987	30.37
SRR14308027	coral larvae	coral larvae	not recorded	not recorded	SRP315987	28.34
SRR14308022	coral larvae	coral larvae	not recorded	not recorded	SRP315987	28.04
SRR14308012	coral larvae	coral larvae	not recorded	not recorded	SRP315987	27.80
SRR14308006	coral larvae	coral larvae	not recorded	not recorded	SRP315987	24.15
SRR14308004	coral larvae	coral larvae	not recorded	not recorded	SRP315987	23.88
SRR14308017	coral larvae	coral larvae	not recorded	not recorded	SRP315987	21.89
SRR14308010	coral larvae	coral larvae	not recorded	not recorded	SRP315987	21.85
SRR14308025	coral larvae	coral larvae	not recorded	not recorded	SRP315987	21.53
SRR14308013	coral larvae	coral larvae	not recorded	not recorded	SRP315987	21.33
SRR14308014	coral larvae	coral larvae	not recorded	not recorded	SRP315987	20.85
SRR14308021	coral larvae	coral larvae	not recorded	not recorded	SRP315987	19.71
SRR14308007	coral larvae	coral larvae	not recorded	not recorded	SRP315987	19.41
SRR14308023	coral larvae	coral larvae	not recorded	not recorded	SRP315987	18.80
SRR14308016	coral larvae	coral larvae	not recorded	not recorded	SRP315987	18.65
SRR14308020	coral larvae	coral larvae	not recorded	not recorded	SRP315987	16.34
SRR14308019	coral larvae	coral larvae	not recorded	not recorded	SRP315987	11.34
SRR14308005	coral larvae	coral larvae	not recorded	not recorded	SRP315987	0.00
SRR14308009	coral larvae	coral larvae	not recorded	not recorded	SRP315987	0.00
SRR14308018	coral larvae	coral larvae	not recorded	not recorded	SRP315987	0.00

Source: CnidoSite RNA-seq expression matrices (ASELA_TPM, StringTie quantification over 24 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.