Detailed information of asel_s1961.g1.t1 in Acropora selago

Genomic Location: sc0001961_pilon:1...6795
NR annotation: XP_044174777.1, splicing factor 3A subunit 1-like [Acropora millepora]
Species Acropora selago · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q8K4Z5Splicing factor 3A subunit 1 OS=Mus musculus OX=10090 GN=Sf3a1 PE=1 SV=1
A2VDN6Splicing factor 3A subunit 1 OS=Bos taurus OX=9913 GN=SF3A1 PE=2 SV=1
Q15459Splicing factor 3A subunit 1 OS=Homo sapiens OX=9606 GN=SF3A1 PE=1 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0005100 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF01805
all species →		SurpSurp moduleFamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR035967
all species →		Homologous_superfamilySWAP/Surp superfamilyInterproscan
IPR000061
all species →		DomainSWAP/SurpInterproscan
IPR045146
all species →		FamilySplicing factor 3A subunit 1Interproscan

 PANTHER
PANTHER termDescriptionSource
PTHR15316
all species →		SPLICEOSOME ASSOCIATED PROTEIN 114/SWAP SPLICING FACTOR-RELATEDInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0003723
all species →		Molecular FunctionRNA bindingInterproscan
GO:0006396
all species →		Biological ProcessRNA processingInterproscan
GO:0000381
all species →		Biological Processregulation of alternative mRNA splicing, via spliceosomeInterproscan
GO:0005686
all species →		Cellular ComponentU2 snRNPInterproscan
GO:0045292
all species →		Biological ProcessmRNA cis splicing, via spliceosomeInterproscan
GO:0071004
all species →		Cellular ComponentU2-type prespliceosomeInterproscan
GO:0071013
all species →		Cellular Componentcatalytic step 2 spliceosomeInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for asel_s1961.g1.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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