Gene detail

Detailed information of aten_s0004.g126.t1 in Acropora tenuis

Genomic Location: sc0000004_pilon:2542701...2545689
NR annotation: XP_044174912.1, TNF receptor-associated factor 6-like [Acropora millepora]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

aten_s0004.g126.t1

GGTTGGGAAGAAGATTTGAAATGGTGCTGAGGAAGAGGTGTAGCTTTTTAGTATGGGAATACTGACTCCAAATTTGCTCTCTTGATTTCTAGTTGAACAAAAGTGCATCCTGGGTTTTTTCCTGTTTGTTTCCTGTGTTTTTTTTCTCACGTTGGGTATTTGATTCCTTCCAAAGGGACCTCGTCCAGCTGTGAATGAACATGTTAAGGAGAAGATGTTAAGTCATTTGATAGACTTCATCAAGGAATTGGAAGCATTGAAGATTGAGCATCCAGGTCTCCAACCACTGAAGAGTCGCTGCCGACGCAGCAGGGGTGGGGTAGAAACCCAGGAGCAGGCTAGTCAAGACGTGCATCTCGGTGATTTGGCAACATTGTGTCAACAACAGCAAACGGAAATCGATGGACTGAGACGCCATGTTAATGAGATGACAGGCGTGGTGGAGCGTTTGGAACGCCGTCTTGATGAATCGCGCATAAGGGTGGAAACGCCGTTACAAGAACTTACTATCAGGTTCAACCGTCAAGAAATGAGAGCGTTTGAGTTCGAAGGCCGTGTGTGCAATGGCTCTTATATCTGGAGAATTGAAAACTACCGACAGCGTCGCCAGGACGCCATCAACGGCATTGCAACGGCCGTACACAGCCCAGCCTTCTATACCAGCCTCTATGGTTACAAGCTGTGCTTGCGTATCAACTTGAATGGCGTGGATAGTGGAGTTGGAAGATACATAGCTCTGTTTGTTCACATGATGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCAACCATGTTTTTCCTGAAAAAGCAAAGGAAATGAAAATATCCTGTTGGACGCTCTTCTAATTCATGTCTTTTATTTCATTTCAACAAAATGTTGATACAGAACTAGAGTATGAAACTTGATGCATGACGTCCACTTCTTCTGCTACAAGGTCTCTTTGCGAGTGGCTCAAACTCACTCTCGTCACCCTCCTCACTCTCGCTCTCCTTATTCTCACTCTCCTCACTCTCACGCTCTCCAAGAGTTGAAAGATGACTTGCTAGATGATACAGCCTGGTCAGTTGTTGTGCAGTGGTTTAATGAAGATCATTAGGGTCCTCTAAACAGATCTTCATTTTAAAACACTGCACTAACGACTGGCCATGATCCATCAGATCATTAACTTCTAAATCTGCTTGAATCAAATTGATATGGAATGTATGTTCAGTGCAACTAAAGGACTACTTTCTCTCCAGTACCAATCCAGATAGTTAAATTTATTATCAGCCATTCATTCAATCAACTTTTTTCAAGAATGTCCAAAATTGAACAATTTTGAATTAAAAATGCCTAGAGATTTAATTGTCCTGAACATTATATTCTCATAAAGTGACATCTTGAAATATCACAATTTCATTAGTGCATGTTGTTACTGATTTACTATGTTAATTACTAACGGGGGGGGGCTATGATATTTTCCTTTGATAAATCAGCATCTCTTGAGGGGGAGGGGGTCAGAAAAAAACACTGAGATGATTAGGGGGGCTTCCAAAAAATGAAAGGAAAAAATAAGGAAATCATCATAGCCCACCCTCTAGATAAATTATGAATGCTCCCTAACACAGTCACACATGATGATAAGGATGCACGCCCAATTTTTTGTATACTTGCGACAGACATTGCGTTACATGTCAATCATACTTCGTTAAATTTTTTTCTGCAATGATGTAATTCAACCCTTATCAACTCGTTTGACCAAACCAAATTTTTGTTTAACTCTCCCACCAACGCAGCACCAGTTTCTCTAGAAACTAGAAATCCATTAAGTGAGTACGAATCGGTAGGAGTACGAACGACCGTAAACCCTTGTCAACATTACACTCACAGCCATCCCAAGGAGCTCCCACTAATGACATGACCCCAGGATGCAAACCATTTACAATGTCACAAGTAATCTCATTTCTTTTTGTTTAATGACTCGTTGTCTTGTTCCTCTGCGATAAAATCATCCTATAAAGGACGGTGCCTACT

Protein

Uniprot

Uniprot term	Description
Q12933	TNF receptor-associated factor 2 OS=Homo sapiens OX=9606 GN=TRAF2 PE=1 SV=2
P39429	TNF receptor-associated factor 2 OS=Mus musculus OX=10090 GN=Traf2 PE=1 SV=1
Q60803	TNF receptor-associated factor 3 OS=Mus musculus OX=10090 GN=Traf3 PE=1 SV=2

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF21355	TRAF-mep_MATH	TRAF/meprin, MATH domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR008974	Homologous_superfamily	TRAF-like	Interproscan
IPR002083	Domain	MATH/TRAF domain	Interproscan
IPR049342	Domain	TRAF1-6/MEP1A/B-like, MATH domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10131	TNF RECEPTOR ASSOCIATED FACTOR	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0031663	Biological Process	lipopolysaccharide-mediated signaling pathway	Interproscan
GO:0032813	Molecular Function	tumor necrosis factor receptor superfamily binding	Interproscan
GO:0033209	Biological Process	tumor necrosis factor-mediated signaling pathway	Interproscan
GO:0045087	Biological Process	innate immune response	Interproscan
GO:0051092	Biological Process	positive regulation of NF-kappaB transcription factor activity	Interproscan
GO:0061630	Molecular Function	ubiquitin protein ligase activity	Interproscan
GO:0070534	Biological Process	protein K63-linked ubiquitination	Interproscan