Gene detail

Detailed information of aten_s0005.g73.t1 in Acropora tenuis

Genomic Location: sc0000005_pilon:782444...789233
NR annotation: XP_029184772.2, ankyrin repeat and SOCS box protein 8-like [Acropora millepora]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

aten_s0005.g73.t1

TATGTGAACTTCACCGTTTATGCAGCATCGTAGAAGGACAAAAGTCCTCTTAAAATACAAAAACAACAAGTTAAAAACAAAATCAGAAATCAGCGCAAAATGTGACCCAATAATCTGGATTTAGTAACCCACCTGACTTTGAAACCAGGCCCGGCCCTCAGCGCATCTCTAAGGAAAATTTGAAGATGGAAGATAATTTATTTAATGAAGTCTTTCGGCCAACTCCTCTGAGATCTCGCCCACTCAGCGTTATCCTCTCCAATCCGAGGGAAAATGGAGTGAAAGAGTTTTTGGATGCGGTGCAAGAAGGGCATCTTGATGATGCCAAGGTCATTTTTGAAGTCAAGAAAATAGATCCCAATGCTTGTCTTAGAGGAGGAGAAACTGCATTGCATATATGTACAGCAAATGGACAGCTAGAATTTTGCAAGTTCCTCCTTGAAGTGGGATCTAATGTAAATCAAAAAGATGGACGCTTAAAGATTCCCCTTCACTTAGCATGTTCAAATGGCCATTTGGATATTGTGAAGGTGCTTGTTCAGGGTGGTTCTAGCTTAGGCGAAATTGACAAACTTGGGAGATCACCTCTTCTATGGGCAACGGCTGGTGGATTTGTGGAAGTTGTGAAGTTCTTACTTGAAGCAGGAGCGCCTGCAAAATCTAATAGAAATTGGCATGCTCTTCATGAGGCCAGCAAAGTGGGTTCTACTGAGTTGGTGCAAATCTTGATAAACGCAGGGGCACCTGTAAATAATCCACAGCAATATTCTGGTGGTGCTCCATGGTCTCCTCTTCATATTGCTGTGCGCCATGGTAATCTAGACTGCATCAAAGTGCTCATCATAGCTGGTGCTAATGTGAACAGTATCAATGCTGGGGGACACACTCCTTTGCATGAAGCTGCATACAGAGGATATGAGGATACAATAAAGATGCTTCTATTACATGGAGCAAACCATCATGCAGCAAGTAACCAGAGGAGGACACCTTTACATGAAGCTTGCATGCAGGGCAAAGTAAAATCTGCAGTAATGTTGTTGGATGTTGGCAGTGAAGTAAATGCTGTAGATTTAGTAAGAGACACTCCTCTCCATTTGGCCCTCAGAGCCAACCACGCCTATGATATTGCTGTCCAGTTAACTTCTACACTCCTGAGATATGGTGCATCGCCAACTCTTCTTGGCCGAGATGATGACATGCCAATTGATATAGCTAAGCAAACTTATCAGGATTACTGCTTAGAATTGTTAGAGGATGCCTTGGAAATACCCCAGCCTCTTACTCAACTTTGCAAAATTTCAGTGAGGAGACAATTAGCTTGTCACTGGGAAAGTATTAGTGAACTTCCTCTGCCATTGACACTGAAGACTTTCATTAAAAGTGCTGTTTGATGATTTGTCAACAATCATCATAAAGATTTTTACAATCAAATTTTGATATGGCAGTCTTCCAGAGAATCTTTGGTACAATTTTTATTTGTAACTATTTATTTCATCTCTCAAACTCTGCATTTCCTGTGTTTTCTCTTTCAATAATAATTGTTACTTTTTTATTTATAAGGGCTGCTTATTTGATGAGGCAATAAGGAGCTTAAATATGCAATATTATTTTGTAGCCATGAAATACAACCATAAGTGAGCTGTTTTCCTATGAACATGTCTTTACATTACACATTTATATTTTTAATTATCTTTTCACCAGAGGGGATGACTCATTTAAATGTGGGGAAGACCACTGTCCTGGGATGCTAAATGTTCACTTCTGGTTTTCTCATAATATAGGTCAATGTTTCCTTGCAGACAGATTTGGTGTAGCGTAGAGAACTTATCTCAAACTCAGAATAACCACTGATTAAAATAGTAAGAGGTTCAATAATAATTATTATTTAAGCTGAAGGGGATTCACACTGTCAAAAATAGATACTTTCTCAGAGGGAAAAGTTTGTTCTGTATTTAATTCAGAAATATTTTTCTCCTTTATAAGTTCTTTCCTTTTCTTTTATGATGGAGCAGTGTTCATAGATTGAGTCCTTATCCTGTTAACTTTCAAAGTCAGATAAACAGCATTTGCTTTA

Protein

Gene family

Gene family	Subfamily
Ubiquitin Family	E3\|E3 adaptor Cullin RING\|SOCS

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF12796	Ank_2	Ankyrin repeats (3 copies)	Repeat	Interproscan
PF07525	SOCS_box	SOCS box	Domain	Interproscan
PF13637	Ank_4	Ankyrin repeats (many copies)	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002110	Repeat	Ankyrin repeat	Interproscan
IPR051070	Family	NF-kappa-B Inhibitor	Interproscan
IPR001496	Domain	SOCS box domain	Interproscan
IPR036770	Homologous_superfamily	Ankyrin repeat-containing domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46680	NF-KAPPA-B INHIBITOR ALPHA	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005829	Cellular Component	cytosol	Interproscan
GO:0007253	Biological Process	cytoplasmic sequestering of NF-kappaB	Interproscan
GO:0051059	Molecular Function	NF-kappaB binding	Interproscan
GO:0071356	Biological Process	cellular response to tumor necrosis factor	Interproscan