Gene detail

Detailed information of aten_s0012.g164.t1 in Acropora tenuis

Genomic Location: sc0000012_pilon:2054911...2074319
NR annotation: XP_029186401.2, LOW QUALITY PROTEIN: tubulin polyglutamylase TTLL13-like [Acropora millepora]
Species abbreviation ATENU · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

aten_s0012.g164.t1

ATGGCTGACAATGAAATAGAGGGAGAAGGCAGTGACAACGAGAGCGATGTGAGCTTCCACTGCGACACCGAATGCGAAGGTGAAGACAGTGGAGGAGAAGTACCTGAGCAGCTTGCCGAAATATGTGATGAACGAACTGCTACACCGAAGAAAGGGAAATCTAAGAGAAAGAAAAAAAGATGGATGAGCGTTTGCTTGACAAGTTGCAAATATGAAAGCGTCCGTAGAGTAACCAAGCGATTTGGGATGAAAGAAGTCGGCGAAGACGAAGACTGGACATTGTTTTGGACTGACTGTTCCGTTGCTCTTGAACGATGCATGGAAATGAAACGCTATCAGAAAATAAATCATTTTCCTGGCATGAGTGAGATATGCCGCAAAGATCTATTAGCCAGAAATATGAACCGTTTATGGAAGCAGTTTCCCAAGGACTATGCTGTTTTTCCCAAGACATGGTGTTTACCAGCAGACTATGGAGAATTTCAGGCCTACTGCCGACAGAAAAAAAACAAAACTTTTATTCTCAAACCAGACAGTGGAAGTCAAGGGAAGGGGATTTTTCTCACAAAAAATCCCAAGGATGTGAAGCCAGGAGAGCATATGGTTTGTCAGCAGTACGTTTCAAAGCCATTTCTTATTGATGGATTCAAGTTTGACCTGAGGGTGTACGTGTTGGTGACATCTTGTGATCCTCTTCGTATCTTTGTTTATGATGATGGATTAGGAAGATTTGCAACTATGAAATACATGGATCCAAGCAACAGCAATTTAGATGACATTTGTATGCATCTTACAAACTATGCTGTTAACAAACACAGTAAAGACTTTATAAGAGATGAGGAGACTGGAAGCAAAAGACGGATCACAACTATTAATAAATGGTTTGAAGAAAATGGCTATGATGTTAAGGAGATATGGGATGCAATTGAGGATGTGATCATCAAGACCTTAATTACTGCTCATCCTATCCTGAAACATAACTACAGGACCTGTTTTCCTAATCACAACAAGGGAAGTGCTTGTTTCGAAATCCTAGGCTTTGATATTCTTCTGGATAGGAAGTTGAAGGCATGGGTTTTGGAGGTTAACCACTCACCAAGTTTTACAACAGACTCTCCCCTTGACAAGGAAATCAAGGATGGGCTGATGTTTGATGCTCTTAATCTTCTAAACTTTGGTGCTTGTGATCGTCGCAAGATACTGGAAGAAGACAAAAGGAGAGTTCGTGACAGACTTTTACAAAAGCAAAGAACAAGGGAAAGCAGGAAAGAAGATGGTGATAGCCAATTTCATTACATTGAATGGTTGAAAAAATATGAAGACTCTCATCTGGGAAAATACAGGCGTATCTACCCAGAGGGAAATGAGGAAAAGTATGCAGTTTTCTTCGAGAACAGCTGTTCCTTGTTCCAAGAGACTACAGCCTCAAAGGCACGGATTGAATGCGCAAGAGTTCAACGCGAACAAATCATAGCAAAACAACAGGAGGAGGAAACTGCGAGACTTAAAAACTGTGGTCGAATTCCAAAGGGTGCGAAGGACGGTCTTAGACCGGAAAGTCCCCACAGCCGCAGGACTAGGAGACCATCTGTCAGAAAGATGTTACATGCCAGTAAAAAGAGATATGAGGGCAGAAGAGCTGGCCAGGAACATCTTGACACGACAAAACCAATAGCAATCTCTGAAGAGGAAGAACTTGAGAGAATAACCAGTCTCCTTCAGCGGGATAATCTCATTCGAGGATTAGGCGTGGTGGAGTTTGTGTACAAACTGTTGCACTGCACACCTGGGACTGGAGGACCACAGAAAAATTGTACATTACACCACTCGAACAACCAGAACAATTCTAAAGATCTTGCAATGAGAAATAGCTCGATGGGCGGCCGGGAACTTGGAAGTAGTTTGGCAAATTCGGTCACGTATGGGTCGATGGGAATACTGTCAACCGCTGGAACAGGAGCCTCCGGCAACAACGCGGGCATTACTCACTTGTCTCGGTTCCAGACCTATCAACCTACTGCTCTGTCAGCGGTAATTAACATGAACGCGCAACAAGCAGCCCCCACACTGACAAGAAACGACCGTCGAGCTTTGGCGTCTGTCGGAATAGTACCTTCGGCGCCTACTGGCTTGCCAAAACATCGTTATTGCTCGACGAAAGCATTCACACGTAGCATGCCCAATGTAGAGTATGATTGGAAATCAGGGACATACGTGGGAGTTGATTCTGGTAATCTAGCTTACGGGATGATTGATCCCAGAATGGACAATCAATCAAATGCCACGCTGAGACGTCGAACATACAGCGCTTCAGGGTTCAAGGTATGCGCAGAATCAGTCCACGCAAATGGTACACGTGGATCGCGCGCGATGGCCACGAACCTTTTGGGTGGATCACAGACCAATCTGTCAAGTCCAGGTGGAATGACACCCAGCGCGCAAGCGCAGCAGTATATGTGTTCAATGTACACGTTTCCTAATGTTCTTAAGGTGGCCCCACAGCCTCAGAATGGAATGAACTTGTCTGTTATATCGGGCCCAGCTCCTGTCAGTTACAGACCGAGTCCAGTAAATTCCACAGAACCAGGTCAGACTAACTCCTCACACAGGATCGATACGTCATCGCCTGGCTTGTTAAGATCAACTAAGGCACAGCGAGTCCGTGGTGCTACAAACAGTTTGCGATTAAAGATTGAACTTCGCGAGAACCACGCAGCCGTTCTGAGTTGA

Transcript

aten_s0012.g164.t1

CAGTTAAACAAATGACAACAGTATGGCTTCCAAAATGTCTCACGTTCCGCAGGCGTGAAATTTTATTTCTTCTTTCTGTGGCGATTTAAAGGCAAACAATTTGTTATGGCTGACAATGAAATAGAGGGAGAAGGCAGTGACAACGAGAGCGATGTGAGCTTCCACTGCGACACCGAATGCGAAGGTGAAGACAGTGGAGGAGAAGTACCTGAGCAGCTTGCCGAAATATGTGATGAACGAACTGCTACACCGAAGAAAGGGAAATCTAAGAGAAAGAAAAAAAGATGGATGAGCGTTTGCTTGACAAGTTGCAAATATGAAAGCGTCCGTAGAGTAACCAAGCGATTTGGGATGAAAGAAGTCGGCGAAGACGAAGACTGGACATTGTTTTGGACTGACTGTTCCGTTGCTCTTGAACGATGCATGGAAATGAAACGCTATCAGAAAATAAATCATTTTCCTGGCATGAGTGAGATATGCCGCAAAGATCTATTAGCCAGAAATATGAACCGTTTATGGAAGCAGTTTCCCAAGGACTATGCTGTTTTTCCCAAGACATGGTGTTTACCAGCAGACTATGGAGAATTTCAGGCCTACTGCCGACAGAAAAAAAACAAAACTTTTATTCTCAAACCAGACAGTGGAAGTCAAGGGAAGGGGATTTTTCTCACAAAAAATCCCAAGGATGTGAAGCCAGGAGAGCATATGGTTTGTCAGCAGTACGTTTCAAAGCCATTTCTTATTGATGGATTCAAGTTTGACCTGAGGGTGTACGTGTTGGTGACATCTTGTGATCCTCTTCGTATCTTTGTTTATGATGATGGATTAGGAAGATTTGCAACTATGAAATACATGGATCCAAGCAACAGCAATTTAGATGACATTTGTATGCATCTTACAAACTATGCTGTTAACAAACACAGTAAAGACTTTATAAGAGATGAGGAGACTGGAAGCAAAAGACGGATCACAACTATTAATAAATGGTTTGAAGAAAATGGCTATGATGTTAAGGAGATATGGGATGCAATTGAGGATGTGATCATCAAGACCTTAATTACTGCTCATCCTATCCTGAAACATAACTACAGGACCTGTTTTCCTAATCACAACAAGGGAAGTGCTTGTTTCGAAATCCTAGGCTTTGATATTCTTCTGGATAGGAAGTTGAAGGCATGGGTTTTGGAGGTTAACCACTCACCAAGTTTTACAACAGACTCTCCCCTTGACAAGGAAATCAAGGATGGGCTGATGTTTGATGCTCTTAATCTTCTAAACTTTGGTGCTTGTGATCGTCGCAAGATACTGGAAGAAGACAAAAGGAGAGTTCGTGACAGACTTTTACAAAAGCAAAGAACAAGGGAAAGCAGGAAAGAAGATGGTGATAGCCAATTTCATTACATTGAATGGTTGAAAAAATATGAAGACTCTCATCTGGGAAAATACAGGCGTATCTACCCAGAGGGAAATGAGGAAAAGTATGCAGTTTTCTTCGAGAACAGCTGTTCCTTGTTCCAAGAGACTACAGCCTCAAAGGCACGGATTGAATGCGCAAGAGTTCAACGCGAACAAATCATAGCAAAACAACAGGAGGAGGAAACTGCGAGACTTAAAAACTGTGGTCGAATTCCAAAGGGTGCGAAGGACGGTCTTAGACCGGAAAGTCCCCACAGCCGCAGGACTAGGAGACCATCTGTCAGAAAGATGTTACATGCCAGTAAAAAGAGATATGAGGGCAGAAGAGCTGGCCAGGAACATCTTGACACGACAAAACCAATAGCAATCTCTGAAGAGGAAGAACTTGAGAGAATAACCAGTCTCCTTCAGCGGGATAATCTCATTCGAGGATTAGGCGTGGTGGAGTTTGTGTACAAACTGTTGCACTGCACACCTGGGACTGGAGGACCACAGAAAAATTGTACATTACACCACTCGAACAACCAGAACAATTCTAAAGATCTTGCAATGAGAAATAGCTCGATGGGCGGCCGGGAACTTGGAAGTAGTTTGGCAAATTCGGTCACGTATGGGTCGATGGGAATACTGTCAACCGCTGGAACAGGAGCCTCCGGCAACAACGCGGGCATTACTCACTTGTCTCGGTTCCAGACCTATCAACCTACTGCTCTGTCAGCGGTAATTAACATGAACGCGCAACAAGCAGCCCCCACACTGACAAGAAACGACCGTCGAGCTTTGGCGTCTGTCGGAATAGTACCTTCGGCGCCTACTGGCTTGCCAAAACATCGTTATTGCTCGACGAAAGCATTCACACGTAGCATGCCCAATGTAGAGTATGATTGGAAATCAGGGACATACGTGGGAGTTGATTCTGGTAATCTAGCTTACGGGATGATTGATCCCAGAATGGACAATCAATCAAATGCCACGCTGAGACGTCGAACATACAGCGCTTCAGGGTTCAAGGTATGCGCAGAATCAGTCCACGCAAATGGTACACGTGGATCGCGCGCGATGGCCACGAACCTTTTGGGTGGATCACAGACCAATCTGTCAAGTCCAGGTGGAATGACACCCAGCGCGCAAGCGCAGCAGTATATGTGTTCAATGTACACGTTTCCTAATGTTCTTAAGGTGGCCCCACAGCCTCAGAATGGAATGAACTTGTCTGTTATATCGGGCCCAGCTCCTGTCAGTTACAGACCGAGTCCAGTAAATTCCACAGAACCAGGTCAGACTAACTCCTCACACAGGATCGATACGTCATCGCCTGGCTTGTTAAGATCAACTAAGGCACAGCGAGTCCGTGGTGCTACAAACAGTTTGCGATTAAAGATTGAACTTCGCGAGAACCACGCAGCCGTTCTGAGTTGACTGAGCGAAGAACTGAAGAATGAAGAAAGGATGAAAACAAGGCAAACGAGGCATCATGAAGCACCCCGTGCGAGACCCAATCATTAGAATTAATTATCTATTACCATTTTTTATTGCATACACTAATTCGTAAATATTCCGTCGCCGTGTAATGTTATATCGTACGTGTAGATAGAAGTGCAAAAATATTTTTCATAGCATTTTAGAGTGAATTTTTATGATCGAAAACTTCTTTACCCCGTTAATTGAGAAAAAAAAACTATAAATGGAATTTATTGAGAATTATTCTCACAACAAGAGATGAGCTTTAAGAGATTCATATCTAAATTGTTTCGTAAGCGAGAAGAAATATAACCGATTTTATGAACTGATTATAATCATCATACGAGTTTGGGAATTATTCGACAAAAAGTAAGAAGTAAGCTTAAAAGATTCATGTTTTGTAAGCGAGATGAAATGATATAACTGAATTTATAAAATGATTATAGCAATCGCATGGGTTGAATCCTTATATGAAAGCAATTAATAATTGTTTAATGTCAAGTGTCTTACATATATGCCTCCTGCATGCAAATTTAAGGAATCAGGAAAGGAAATTGTCGCTTATTAGTATTACACTCTGTGGATTCTCTCATTCTCTTTGATGAAGTCATTAGCCTTTTATATATCCTTTTATCATGTGACGTTATTGCACACAAATTACAGTAACTCTGGAACCTGTATAGTCCCATTTAAGATCTTGAGAGCACTAGTCTGAACTTAAAGCCTTTGAAAGCTTTCACTTCCCACCAAAATCTCACGTAGTTGAATAAATGAGAGTTAGTTTTTAGTTCGGTATGTAAAAAGTCCTATCAGTTTTTCCTCTTGCAATGCTCGCAGCAATAAGAAAGCTCTTCCGTGGATCATTTAATAAAGCGACAACATTTTC

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
A6NNM8	Tubulin polyglutamylase TTLL13 OS=Homo sapiens OX=9606 GN=TTLL13 PE=1 SV=2
A4Q9F6	Tubulin polyglutamylase TTLL13 OS=Mus musculus OX=10090 GN=Ttll13 PE=1 SV=1
A8CVX7	Tubulin polyglutamylase ttll6 OS=Danio rerio OX=7955 GN=ttll6 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005350 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03133 all species →	TTL	Tubulin-tyrosine ligase family	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR004344 all species →	Family	Tubulin-tyrosine ligase/Tubulin polyglutamylase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12241 all species →	TUBULIN POLYGLUTAMYLASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0036211 all species →	Biological Process	protein modification process	Interproscan
GO:0000226 all species →	Biological Process	microtubule cytoskeleton organization	Interproscan
GO:0005929 all species →	Cellular Component	cilium	Interproscan
GO:0015631 all species →	Molecular Function	tubulin binding	Interproscan
GO:0018095 all species →	Biological Process	protein polyglutamylation	Interproscan
GO:0070740 all species →	Molecular Function	tubulin-glutamic acid ligase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K16582	TTLL6_13; tubulin polyglutamylase TTLL6/13	EC:6.3.2.61	Cytoskeleton proteins	ko04812	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.