Gene detail

Detailed information of aten_s0024.g111.t1 in Acropora tenuis

Genomic Location: sc0000024_pilon:1603850...1635784
NR annotation: XP_029179300.2, nuclear RNA export factor 1-like isoform X1 [Acropora millepora]

Gene Structure

More details in Jbrowse

Sequence

CDS

aten_s0024.g111.t1

ATGTCAAAAAATTTGTTTGCCAAAGCCGTTGAAGATGCAACGTTAACAGTGACTAAGTCTCCAGATGGATCACGGAGCTTCAGAGCTGAAGGACCAGATAGACCAACTAGGGGAAGATTTCATCGTGGCTACTCGAGGGGAAGAGGGAGAGGACGTGGTCGTGGCCGTGGCAACTATCGAACCAGAGGCAGCTTTCCTCATCCAAGGTCACACCTAGGTGATGATGATGATGATGATGATGATATCCGCATGTATTCAATGGATGAAGGCCTCAGATCGGATTCAAGATTTAATCCTTATCGATCAAGACCTCTATCTCATCGTGGTGGAAGAGAGGGAAATAACAACAGAGGCGATATTAAGTCCAGATTAGGGGCAGCTCCCTTTAACAAAGGAAGCAGTGGCCAAGCCTGGTTCAAAGTTGTGATCATAGAAGGTCAGAAACACGACAAAGAGTGGTTAATAAGAAAACTGCAGAATGCATGTGAAGAAGCCTTTCAACCAATTGATTTTCACATCATGAAAGGAGACAGTGTAGCATTTTTTGTGGAAGGAAGTAAAGCTGCAGAAGCGTTGAAGAAAGTGAGCCATAAGATTACAGTAAGAGATGGCTCAAAGCTCATATTCACTGTTCGGTCCAGTGGCGCACCTCATAATCCAAACAGTGTATTTACTGCGGCCGTGGATGGAAGCCGTGGCAATACCAGGGAAGGCAACAGTACTCCAGATGACAACACCAAAGAAATTTTAAAGCATTGCTTGGGTAAGCGTTATGATGTAATGTCAAAGGCTCTCAATCTCTCAGACCTTTTCCATGATGAAGTGCTGAATGAATATAATGTGCAAGGAGCATTATCAAAGCCTTGGTTAGCTTCAAGGATTGTGCAGATCATTGGTGAGAACTGTCCAGAGGTTTTGTCACTGGATCTAAGTAACAACAAACTGAGAAACTTAGATGGCTTCAAGGACCTTGGACAACAAACATCAAATCTAAAACATCTCAAAGTTTGTAACAATCAGCTCCGGGCTGTTGAGGACCTTGACAAGATAAAATCGTTGAGTCAGCTCACCTCCTTGGAGCTTGATGGAAATCCTCTTTGTGACATGTTTCAAAATAAAGGAAGTAATTACATCAACTCTGTAAGAAGCAGGCTTCCAAAAATCACCTTTTTGGATGGTCATGAACTTCCTCCGCCAATTGGCTTTGATCTTCCCTCTCAACAAGCATTGCCTCCATCAAAGGGCAGTTTCTTTTGTGATCCTCAAATACAAACGATGGTTTTGAAATTTCTTGAACAGTATTTTAAGATCTATGATACAGACGATAGGCAAGGCTTGCTTGAAGCTTATCATGACCAGGCCATATTCTCAATGTGCGTACATTTTGGAACAATGAGCAAGGACCGTAGTGCTCCTAGGGGTCCTTCTCTTGGAGAGTACTTGAAAAACAGCAGAAACATGACGCGAGTCACAGAACCAGAACGACGTGTTGCTCTTTTGAAGCACTCAAGGCTGTCCGTGGTTGCGTTTTTGAATGAGCTTCCTGCCACCAAACATGACTGGTCCACTTTTACAGTTGATGTGAGCCTTGCTTTGCCAACTTGTCTGTCATTTGCTGTGCGGGGTTTGTTCATGGAGAATTCCAAAACCCTGCGCTCGTTTTCAAGAGTGTTTCTTGCTGTTCCTGGTTCTGGTGGAAAAACGTTGAGCATCATTAATGATGAACTTCACGTCCGAAATGCCTCACCAGCTCAAGTTGAGCGTTTGGCTAATGAAACATCTGCGTCCAGCACAGAGAAGGTCAGCGCAGAAGTGTTCCCTGTGTCATGTACACCTCAGCAACAAGAGATGCTTCTGAAGTTTTCACAACAATCGACAATGAATTTGGAGTGGTCATTCAAATGTCTCAAGGAAAATAATTGGGATTATGGAAAAGCTGCTCATGCCTTTACTTCATTAAAGAGCAATGGCAGTATACCTCCTCAAGCATTTATCAAGTCAAGCTAG

Transcript

aten_s0024.g111.t1

CTTCAAGTTTCTGAGGAAGTTTTTTGTCCGTTTTGAAATTGTAGGCCCCTTTTTCTCATAACTGTAGAGACGACGAAGACTTTTTGGAGTAGCTTTGAATTCTTGCTGCCGACGCACTTTATTATCACTATGCGTGAGGGACACTCTGTGACTAATAAATGTCGCACTTACGGTCGGGACTATCTCGTATGACTTTTTGAAATCGTTGCTGAAATTTTCGCCCATAGCATGTCAAAAAATTTGTTTGCCAAAGCCGTTGAAGATGCAACGTTAACAGTGACTAAGTCTCCAGATGGATCACGGAGCTTCAGAGCTGAAGGACCAGATAGACCAACTAGGGGAAGATTTCATCGTGGCTACTCGAGGGGAAGAGGGAGAGGACGTGGTCGTGGCCGTGGCAACTATCGAACCAGAGGCAGCTTTCCTCATCCAAGGTCACACCTAGGTGATGATGATGATGATGATGATGATATCCGCATGTATTCAATGGATGAAGGCCTCAGATCGGATTCAAGATTTAATCCTTATCGATCAAGACCTCTATCTCATCGTGGTGGAAGAGAGGGAAATAACAACAGAGGCGATATTAAGTCCAGATTAGGGGCAGCTCCCTTTAACAAAGGAAGCAGTGGCCAAGCCTGGTTCAAAGTTGTGATCATAGAAGGTCAGAAACACGACAAAGAGTGGTTAATAAGAAAACTGCAGAATGCATGTGAAGAAGCCTTTCAACCAATTGATTTTCACATCATGAAAGGAGACAGTGTAGCATTTTTTGTGGAAGGAAGTAAAGCTGCAGAAGCGTTGAAGAAAGTGAGCCATAAGATTACAGTAAGAGATGGCTCAAAGCTCATATTCACTGTTCGGTCCAGTGGCGCACCTCATAATCCAAACAGTGTATTTACTGCGGCCGTGGATGGAAGCCGTGGCAATACCAGGGAAGGCAACAGTACTCCAGATGACAACACCAAAGAAATTTTAAAGCATTGCTTGGGTAAGCGTTATGATGTAATGTCAAAGGCTCTCAATCTCTCAGACCTTTTCCATGATGAAGTGCTGAATGAATATAATGTGCAAGGAGCATTATCAAAGCCTTGGTTAGCTTCAAGGATTGTGCAGATCATTGGTGAGAACTGTCCAGAGGTTTTGTCACTGGATCTAAGTAACAACAAACTGAGAAACTTAGATGGCTTCAAGGACCTTGGACAACAAACATCAAATCTAAAACATCTCAAAGTTTGTAACAATCAGCTCCGGGCTGTTGAGGACCTTGACAAGATAAAATCGTTGAGTCAGCTCACCTCCTTGGAGCTTGATGGAAATCCTCTTTGTGACATGTTTCAAAATAAAGGAAGTAATTACATCAACTCTGTAAGAAGCAGGCTTCCAAAAATCACCTTTTTGGATGGTCATGAACTTCCTCCGCCAATTGGCTTTGATCTTCCCTCTCAACAAGCATTGCCTCCATCAAAGGGCAGTTTCTTTTGTGATCCTCAAATACAAACGATGGTTTTGAAATTTCTTGAACAGTATTTTAAGATCTATGATACAGACGATAGGCAAGGCTTGCTTGAAGCTTATCATGACCAGGCCATATTCTCAATGTGCGTACATTTTGGAACAATGAGCAAGGACCGTAGTGCTCCTAGGGGTCCTTCTCTTGGAGAGTACTTGAAAAACAGCAGAAACATGACGCGAGTCACAGAACCAGAACGACGTGTTGCTCTTTTGAAGCACTCAAGGCTGTCCGTGGTTGCGTTTTTGAATGAGCTTCCTGCCACCAAACATGACTGGTCCACTTTTACAGTTGATGTGAGCCTTGCTTTGCCAACTTGTCTGTCATTTGCTGTGCGGGGTTTGTTCATGGAGAATTCCAAAACCCTGCGCTCGTTTTCAAGAGTGTTTCTTGCTGTTCCTGGTTCTGGTGGAAAAACGTTGAGCATCATTAATGATGAACTTCACGTCCGAAATGCCTCACCAGCTCAAGTTGAGCGTTTGGCTAATGAAACATCTGCGTCCAGCACAGAGAAGGTCAGCGCAGAAGTGTTCCCTGTGTCATGTACACCTCAGCAACAAGAGATGCTTCTGAAGTTTTCACAACAATCGACAATGAATTTGGAGTGGTCATTCAAATGTCTCAAGGAAAATAATTGGGATTATGGAAAAGCTGCTCATGCCTTTACTTCATTAAAGAGCAATGGCAGTATACCTCCTCAAGCATTTATCAAGTCAAGCTAGCCACGTGTTCACTTCCTTGGTGTCCAAGTTTTATTTCATACTTTGATGGAGAACAAGTTGTACCAACATTTTAACGTAATTTTAACTCACAATAACGATTTACAGTGATGTTCGTCAAGCAAATGTGTTGGTGTTTGTCATCTGTTATAATTTTAAAAGAGATGTGTTATATTGAGAAAGTTATTAAAGTCTATTCAATTGT

Protein

Uniprot

Uniprot term	Description
Q9UBU9	Nuclear RNA export factor 1 OS=Homo sapiens OX=9606 GN=NXF1 PE=1 SV=1
P58797	Nuclear RNA export factor 1 OS=Coturnix japonica OX=93934 GN=NXF1 PE=1 SV=1
Q99JX7	Nuclear RNA export factor 1 OS=Mus musculus OX=10090 GN=Nxf1 PE=1 SV=3

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF09162	Tap-RNA_bind	Tap, RNA-binding	Domain	Interproscan
PF02136	NTF2	Nuclear transport factor 2 (NTF2) domain	Domain	Interproscan
PF03943	TAP_C	TAP C-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR030217	Family	Nuclear RNA export factor	Interproscan
IPR035979	Homologous_superfamily	RNA-binding domain superfamily	Interproscan
IPR005637	Domain	TAP C-terminal (TAP-C) domain	Interproscan
IPR012677	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan
IPR015245	Domain	Nuclear RNA export factor Tap, RNA-binding domain	Interproscan
IPR002075	Domain	Nuclear transport factor 2 domain	Interproscan
IPR001611	Repeat	Leucine-rich repeat	Interproscan
IPR018222	Domain	Nuclear transport factor 2, eukaryote	Interproscan
IPR032675	Homologous_superfamily	Leucine-rich repeat domain superfamily	Interproscan
IPR009060	Homologous_superfamily	UBA-like superfamily	Interproscan
IPR032710	Homologous_superfamily	NTF2-like domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10662	NUCLEAR RNA EXPORT FACTOR	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0016973	Biological Process	poly(A)+ mRNA export from nucleus	Interproscan
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0051028	Biological Process	mRNA transport	Interproscan
GO:0005737	Cellular Component	cytoplasm	Interproscan
GO:0006406	Biological Process	mRNA export from nucleus	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K14284	NXF, TAP, MEX67; nuclear RNA export factor	-	Ribosome biogenesis	ko03009	deepkoala