Gene detail

Detailed information of aten_s0029.g175.t1 in Acropora tenuis

Genomic Location: sc0000029_pilon:2582724...2585850
NR annotation: XP_029180542.1, omega-6 fatty acid desaturase, endoplasmic reticulum isozyme 1 isoform X2 [Acropora millepora]
Species abbreviation ATENU · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

aten_s0029.g175.t1

CATGAAACTACAAAACAGTGTTCTTTAATGAAAGGTCTCTCGCTGTTTTACAGCGCGAGCCCTTATTACGTAACAATGATATCTTGGCAACCGCCGTCGCGGAACATCTTTCTGACGCCTGCCGCGCGGAATAATAATGTCACAGAGAATATCTCACTGCTCGAGACGGATCAGTGATAAAAGAAGAAATTCACAACAATAAAAACGGTCAGTTGCCTGTTTGCAGTGTTGCGTTGTTTGTCAATTAGTTCAGTATTTCAATCATTTGTACTATATCGCTCGGATAAGCTGTTTGAATTTAAGAGCGTAATTTCATAACTATCGGCGATTCTTGGACTTTCTTTTGCGGTTGAGAGGAAATAACCACCCGCCATTTATTCTGATTTATTTATTAATTCCGGAACAGGTGCTGAGTGAATTATTTAGGTTATTAACCCTCGGTTGGTAGACTTCATGATGTTGATTGGTTGAAAAGATAAAACATTCTACGCGTCAGGATGGATGAAACGACTAGAAGGCGAGGGAAAGAAGGTCCATCGGTTGACGAAATAAGTAAAATACAAGAGAAAATCGTGGAAGCAAGAGTTCCCACAAGTGCTCCGCCTTTTACACTGAAGGACTTGAAAGATGCGGTTCCCGCTCGCTGCTTTGAGAGTTCTCTTCTTACTTCGAGTTTATACCTTTTGCTCGACCTGACTGGCGTCTTCCTGTTGTACGCCGCGGCGATGTGGGTTTTTTATGCTTCTCTTCCGTGGTACGCTCACGCCGTTTTTTGGCCCGTTTATTGGATATGTCAAGGTTGTGTGAGTTTCGGTGTGTGGATAATAGCTCACGAGTGCGGTCACTATTCCTTCTGCGCCAGTAAGTTCGTCTGTGATATCGTTGGCTTAGTGTTGCACACTGCATTGTTCGTGCCTTATCACTCATGGAGAATCAGCCATGCACAACATCACCGCAACACAAACAGAATGGATGGCGACCAAGCTTTCGTTCCAAACACTCGCACGTTTCTCAAGTCGGGAAATGATTTAGAATTTCCAAATATATTTTGGCGCATGCTGCATCTTGTGAAATACTTATCCATTGGCTGGCCTGCGTATCTGTTTTTCCACGCGCGAGGCAGGCCTTATGAAAACTACCCCTCTCGCCCAAACCATTTCAACCCATTCGCTCCAATCTTCTCACGGAAAGATTTCTGGGATGTCGTTGTGAGCGACATCGCATTGCTGGTTTGGATTGGTATCCTGTATTACTTCAGTGCCAATGTTTACAGTCTTGGATGGTTGGTGAGCCTGTACGTTATCCCACTTATGCAAGTCAACATGTGGTTAGTCATTGTCACCTATCTGCAGCACACAGATATTAAAGTCCCTCATTACTCAGGCAATGAGTGGACCTGGCTAAAAGGGGCCCTATGCACCGTGGACAGGGACTATGGTATACTCAACTACGTCTTCCATCATCTTACAGATTGTCACGTGGCACATCACCTCTTCTCCTATATGCCACATTACCATATGGCTGAGGCAACCGAGGCCATTAAACCAATTCTGGGTAGGTACTACACATTCGACAACACCCCCGTGTGGAAGGCGCTATGGAACACCGACAGCTATTGTCGGTTTGTGGAAAACAGCGGAAAAATTTTGTGGTACAAATTCTTACCCGAACATTAACAAACAATTCAATGGAACATTGGCAACAATCTTGAAAATTACAGAGAACAATTTTAAAACAATTTATCAAGATTAATGTGTTAAAATATTTCAACTGTATTCCATTGTAAAAACCGATGGCAAGTGTTATTTGAGCAGCGCCAAATAATAATAAAAGGTGGTTTGCCTCTCTTTGACTGATTAGCATAACATGCATTTTCAAAACACTCATAAATAATGCACTATTGAAATATAATATCTGAAGCTATTTTAATCTTCCTACTATTATGTCTAAATGCTATGAATTCGTAAAGTTGAACTTCTCTAGGAGAAACTCAACTATGAAGACAAACATAATTTTTTTTTGCTTGCATCTTAATTTGTTGGCAAGTATTGACGAGATGTTAAAGAGGTTCCACTATCACAAATTTGGACAGAGAGCTGGGGCAAGGGTGAATTTGGAGATTGATCTCAAAGTTTCAGACTATTCCGTTGAATAATTTACGTTTTGTTTCAATAAAAGATTGGTGACTGAGAAGGTCACATATCCTAGTTTTCAAGCAATCACCGCACAGTAATGATTTTGTTTAGCGAAGAGTGAGAAAAGATACGGCTTGAAAGATGTAGCAAACAACTATTGACAATTATTCTCCAGGTGCAAGCTGGATCAACCTTAGTGATCTAATCAGTTTGTTTTAGTTTGTTTAAACCGCCGTCCGGTTAGCTCAGTCGGTTGAGTGACGGACTTCCGTGCGGAAAGTCGTGAATTCCAACCTTAGCCGGACCTTAAATAACTGAGTAGATAGTGCTGCCTTTGTAATTACATCTGCAAATGATTAGACTCTCTAGTCTTCTCGGATAAGGACGATAAATCGTAAACCCCTTCTCGCAGCTCTTCATTGTTCACAATTCTGCGAGACGTAAAAGAACCAAAAAAGTTGTTAGAGCAGAAACCTGTACAACATGTGGTAAATATAATTTCCGCTGGCCAAACCAGCCTTCTCCATGTGCAAACGAAATACATGGTACTGAAATTCATATTGGCTCCACGTTGTATCGGTTTTTGCCCTGGAAAGTTCACCGCAAATGTATGTTTTATTTAGCATTGCTTCATCTTTTTGGAGTGCAGCCTCGGAATTTGACGTCATTAGAGGCGCGGCTCGAACAGATTTCCTTTGAACTAAGCACAACATTGTGTTGTGCCCACGTCTGATGCCCAAGTGCACGGCAGAGTCATGTCTTTCAAGCTTTCCGCTACTGGTGAAACTCGCAAACCTGCGCGTGTTTCTCAGTTCTTAATTTTGATCCCCTTTCCGAGTGCAATAGTCCTTCTGCGTTAAATAATTGTATGCGTAATCC

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P48630	Omega-6 fatty acid desaturase, endoplasmic reticulum isozyme 1 OS=Glycine max OX=3847 GN=FAD2-1 PE=2 SV=1
Q84VT2	Delta(12)-acyl-lipid-desaturase OS=Punica granatum OX=22663 GN=FAD12 PE=2 SV=2
Q8GZC3	Delta(12)-fatty-acid desaturase FAD2 OS=Vernicia fordii OX=73154 GN=FAD2 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005746 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00487 all species →	FA_desaturase	Fatty acid desaturase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR005804 all species →	Domain	Fatty acid desaturase domain	Interproscan
IPR012171 all species →	Family	Fatty acid desaturase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR32100 all species →	OMEGA-6 FATTY ACID DESATURASE, CHLOROPLASTIC	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0006629 all species →	Biological Process	lipid metabolic process	Interproscan
GO:0006636 all species →	Biological Process	unsaturated fatty acid biosynthetic process	Interproscan
GO:0016491 all species →	Molecular Function	oxidoreductase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K10256	FAD2; omega-6 fatty acid desaturase / acyl-lipid omega-6 desaturase (Delta-12 desaturase)	EC:1.14.19.6 EC:1.14.19.22	Lipid biosynthesis proteins	ko01004	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.