Detailed information of aten_s0051.g40.t1 in Acropora tenuis

Genomic Location: sc0000051_pilon:618683...641836
NR annotation: XP_029193221.1, regulator of nonsense transcripts 1-like [Acropora millepora]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
Q9EPU0Regulator of nonsense transcripts 1 OS=Mus musculus OX=10090 GN=Upf1 PE=1 SV=2
Q92900Regulator of nonsense transcripts 1 OS=Homo sapiens OX=9606 GN=UPF1 PE=1 SV=2
F1RCY6Regulator of nonsense transcripts 1 OS=Danio rerio OX=7955 GN=upf1 PE=2 SV=1

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF04851ResIIIType III restriction enzyme, res subunitFamilyInterproscan
PF13087AAA_12AAA domainDomainInterproscan
PF09416UPF1_Zn_bindRNA helicase (UPF2 interacting domain)DomainInterproscan
PF18141UPF1_1B_domRNA helicase UPF1, 1B domainDomainInterproscan
PF13086AAA_11AAA domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR018999DomainRNA helicase UPF1, Cys/His rich zinc-binding domainInterproscan
IPR027417Homologous_superfamilyP-loop containing nucleoside triphosphate hydrolaseInterproscan
IPR006935DomainHelicase/UvrB, N-terminalInterproscan
IPR047187DomainUpf1-like, C-terminal helicase domainInterproscan
IPR040812DomainRNA helicase UPF1, 1B domainInterproscan
IPR041679DomainDNA2/NAM7 helicase-like, C-terminalInterproscan
IPR045055FamilyDNA2/NAM7-like helicaseInterproscan
IPR041677DomainDNA2/NAM7 helicase, helicase domainInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR10887DNA2/NAM7 HELICASE FAMILYInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0000184Biological Processnuclear-transcribed mRNA catabolic process, nonsense-mediated decayInterproscan
GO:0003723Molecular FunctionRNA bindingInterproscan
GO:0003724Molecular FunctionRNA helicase activityInterproscan
GO:0005524Molecular FunctionATP bindingInterproscan
GO:0005737Cellular ComponentcytoplasmInterproscan
GO:0008270Molecular Functionzinc ion bindingInterproscan
GO:0003677Molecular FunctionDNA bindingInterproscan
GO:0016787Molecular Functionhydrolase activityInterproscan
GO:0004386Molecular Functionhelicase activityInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K14326UPF1, RENT1; regulator of nonsense transcripts 1EC:5.6.2.5
EC:5.6.2.3
Messenger RNA biogenesisko03019deepkoala

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