Gene detail

Detailed information of aten_s0052.g69.t1 in Acropora tenuis

Genomic Location: sc0000052_pilon:962001...970765
NR annotation: XP_029197428.2, DNA-directed RNA polymerases I and III subunit RPAC1-like isoform X1 [Acropora millepora]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

Protein

Uniprot

Uniprot term	Description
O15160	DNA-directed RNA polymerases I and III subunit RPAC1 OS=Homo sapiens OX=9606 GN=POLR1C PE=1 SV=1
Q32L22	DNA-directed RNA polymerases I and III subunit RPAC1 OS=Bos taurus OX=9913 GN=POLR1C PE=2 SV=1
P52432	DNA-directed RNA polymerases I and III subunit RPAC1 OS=Mus musculus OX=10090 GN=Polr1c PE=1 SV=3

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01193	RNA_pol_L	RNA polymerase Rpb3/Rpb11 dimerisation domain	Domain	Interproscan
PF01000	RNA_pol_A_bac	RNA polymerase Rpb3/RpoA insert domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR033901	Family	DNA-directed RNA polymerases I and III subunit AC40	Interproscan
IPR022842	Family	DNA-directed RNA polymerase subunit Rpo3/Rpb3/RPAC1	Interproscan
IPR036603	Homologous_superfamily	RNA polymerase, RBP11-like subunit	Interproscan
IPR050518	Family	Archaeal Rpo3/Eukaryotic RPB3 RNA Polymerase Subunit	Interproscan
IPR011263	Domain	DNA-directed RNA polymerase, RpoA/D/Rpb3-type	Interproscan
IPR036643	Homologous_superfamily	DNA-directed RNA polymerase, insert domain superfamily	Interproscan
IPR001514	Conserved_site	DNA-directed RNA polymerase, 30-40kDa subunit, conserved site	Interproscan
IPR011262	Domain	DNA-directed RNA polymerase, insert domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11800	DNA-DIRECTED RNA POLYMERASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0001054	Molecular Function	RNA polymerase I activity	Interproscan
GO:0001056	Molecular Function	RNA polymerase III activity	Interproscan
GO:0003899	Molecular Function	DNA-directed 5'-3' RNA polymerase activity	Interproscan
GO:0006351	Biological Process	DNA-templated transcription	Interproscan
GO:0046983	Molecular Function	protein dimerization activity	Interproscan
GO:0005666	Cellular Component	RNA polymerase III complex	Interproscan
GO:0005736	Cellular Component	RNA polymerase I complex	Interproscan
GO:0003677	Molecular Function	DNA binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K03027	RPAC1, RPC40, POLR1C; DNA-directed RNA polymerases I and III subunit RPAC1	-	Transcription machinery	ko03021	deepkoala