Gene detail

Detailed information of aten_s0097.g12.t1 in Acropora tenuis

Genomic Location: sc0000097_pilon:156356...161170
NR annotation: XP_015753234.1, PREDICTED: T-box transcription factor TBX19-like [Acropora digitifera]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

aten_s0097.g12.t1

TTAGGTCATTAACTTCTGCGTTAAGATTCCATCCTGATTTTAGGGTTTCTAAATTTACTCGAGTAATAGCTTTCAGTGACAATTGTGAAAATGAAGTTCATTTCGGAGTCGCCCGAGCAGATTCCAATAGACACGGCCTCCAAAAACGCGTGCCCAAAAGTTGTTTTAATCGAGTCATGTTCTCCACGGGAAGAAAGTTCAAAGCGGGCACCAATTGCGCGAAGTCGGAATTTCAAATCCACAAGATCTCTCGGGAAACGACGAAAGCAGAATGCACCGAGTCGCTTGACTGGAGGAAAAGCAGCTATGGAGGGCGAAGGAAAGACAATTTCAGCGCGTCTCAGAAATCCCGAGTTATGGCAACTGTTCCACGAAGAGGAAACAGAAATGATTATCACAAAGGCTGGAAGGCGCATGTTCCCAGTCCCCGAATTTTGTTTGTGCGGGCTCGATCCAGGGCAGTATTACGGCTGCGCAATAGAGGTCATTGCGGCCGATAGCTACCGATATCGACACAAGTCCTCCGAGGGATGGCTCTGCTCGGGCAAAGGGATGCCGGTGAACCAGTCACACAGCAAATACCTGCACCCCAACTCGGCCAGTCTTGGGCAGTACTGGATTCGTGAGGGAGCCATCTTTGACAAGCTGAAGTTATCCAATCACATCCTCCCGACCGGTGGAAACATTGTCTTGAATTCCATGCAAAAATACCGACTGCGTCTCATTGTAACCAAGCTGGGAATGCATCATTGTGATCGTTGGATGTTCGACTTTCCAGAGACCCAGTTCATCACGGTTACAAGTTACCAGAATCCACGAATGACGCAGCTGAAGATTGACAACAATCCATTTGCCAAAGCGTTTAGAGAAGGAAAGAGGGCAGGCAGACGTGACAGCGGGGAATCAAAGGCAAAGAAAAGAAAGACCCGCTTTCCCTCTCCACCGCCAATCATTCGTTACCAGACTCCCTTCATCAGCTTTCTGAGCAACCACGACCAACCATCATCTCAACAAGCCCTTCCTCCAATTCCGCCACCGCCGCCACTGTCACATGACTGGCCCGAGGAACCGCTATTGGCTAGAGGCATTCCTGTTCTCAACGCACCCGACTTTCCATTCAGTTCTTGGGAAAGAGACGAATCCATCGCGCCAGCCCAAGGTGTTTCATCCATGAATTCCAGCTTTAAAGTTGACCTCAGTGGTCCTTTTCAGTGGCGTGAGAATTTTGCTTTCCCCTTCCAAGAACTTCCTGTCGCAGAGGAGATGCCATTTCAGCCGCAACCACAGTTTCCGACACCATGTTACTCGGTGGTGCCACCACCCACGTCGGCTTTTGGTTTGTACGAGGATGCGCACGCGCAGTTGCCACACTATATTTCCCGTGATCCATTTTGGCGGGAAATTTAGAAGGGAAGCTTTTCGATTATTTCGTCAAACGAACCCAACCTATTTCCTTTAAATGTCGCTAAGTTTTCAAAAATTCACCCTTTCCGAGATAAGTCACACTTATGAAAAAGACTGCAAAATTTAAGCTAGAACTTTCCGTGTTATGGCAAACAGTGTATTTTTTCCGTTTCCAATTCTTTAGTTTTCGTAGTCAATTTTTTTCCCATTCTGGTTCGCCATCGCCCCTATCTAATCCGAAAAGTCGATCATTGCTTTCAGCGTGTGGTGTTTTAGCATTCCCTTGAATTAATATTGTCTTGGCTCTTTCCCAGTTATCAATTGAAAGTTAATCTGGTGTAGCAATTAGCATCTCCGAAATTAATTGTTACGATTCAAAAGGAACCTCCAACTAAGTTTATAGGTGTGTCAAGCATTTCGTTTGCAAAAAAGTCCCTTGTTCATAAGTCTTTGGTAGGAATTTCTCGCTTCTTGTTGTAATAAAGGTTGTAAACTAATGCCGAACACCTTCAAAAGAAAGTTAAATTATTTGCTTCTGTTATAAATTTCAAGATTTTGACGAAAACTTGCAGTCTGAATAAAATTGAAGTGTGCATACTCTCTTTACTTGGCTTAGTTGGACTTTTAGTTAGTTTATTCATAGTTAGTTTTAACTATGGTTTATTGTGGTGCACATGTTTAAACAAAGATTCTCCGAGAGGTCCGTTAGCCACATTTTATAGATCTACGGCCAATGCTGTATCGAGAGTGTAACTTGGAGTAATTATAGAATATAGGAGTGCGTTCGAC

Protein

Uniprot

Gene family

Uniprot term	Description
P87377	T-box protein VegT-A OS=Xenopus laevis OX=8355 GN=vegt-a PE=1 SV=2
O13161	T-box protein VegT-B OS=Xenopus laevis OX=8355 GN=vegt-b PE=2 SV=1
Q28HY0	T-box protein VegT OS=Xenopus tropicalis OX=8364 GN=vegt PE=2 SV=1

Gene family	Subfamily
Transcription Factors Family	T-box

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00907	T-box	T-box	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR046360	Domain	T-box transcription factor, DNA-binding domain	Interproscan
IPR001699	Family	T-box transcription factor	Interproscan
IPR008967	Homologous_superfamily	p53-like transcription factor, DNA-binding domain superfamily	Interproscan
IPR018186	Conserved_site	Transcription factor, T-box, conserved site	Interproscan
IPR036960	Homologous_superfamily	T-box superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11267	T-BOX PROTEIN-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003700	Molecular Function	DNA-binding transcription factor activity	Interproscan
GO:0045893	Biological Process	positive regulation of DNA-templated transcription	Interproscan
GO:0000978	Molecular Function	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Interproscan
GO:0000981	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0001708	Biological Process	cell fate specification	Interproscan
GO:0006355	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0006357	Biological Process	regulation of transcription by RNA polymerase II	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K10180	TBX6; T-box protein 6	-	Messenger RNA biogenesis	ko03019	deepkoala