Gene detail

Detailed information of aten_s0195.g9.t1 in Acropora tenuis

Genomic Location: sc0000195_pilon:276586...291205
NR annotation: XP_029202780.2, hepatocyte growth factor-regulated tyrosine kinase substrate-like isoform X2 [Acropora millepora]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

aten_s0195.g9.t1

GTCCTTTTTTTAGCACAAGACGTCATTCCTCAATACAATGCATAGCCACCATATTAGAAACAACTCTGCGAGGTAACTTGACGAAACGAGTAGTTCACAGTGTTTAGAGCTATTTTGATCACTACCTAATCTGATTCAGTCATGGGGATATTTTCAAATACCTCAAATTTTGATGTACTAGTTGATAAAGCGACAAGTCAGCTCCTTTTGGAACCAGATTGGGACAGTATTCTTCAAATCTGTGATTATATTCGACAGGAAGATGTTATTCCCAAATATGCCGTGGCAATCATGAAAAGAAAGATATATGATAAAAATCCACACGTAGCAAGATATGGTTTAATTGTGTTGGAAGCTTGTGTGAAGAACTGTGGAGCTCCCATGCATAAAGAAGTTGCCACCAAGGACATGATGGATTCATTCAGAGAACTAGCTAAGTCCAGCCCTGAACCAGTGAAAGAACAGATTCTCAGTATGATCCAGACTTGGTCAATAGCCTTTCGCAAAGAGCCAAAATACAAAATTGTTCAGGACACCTTTAATCTCATGAGAATGGAAGGATACAAATTTCCTTCAGTGAATGAATCTAGTGATGCTTTGTTTACAGCAGAAACAGCTCCAGAGTGGGCAGAGGGGGATGTTTGTCACATGTGCAGAGTTAAGTTTTCAACCTTTCAAAGACAGCACCACTGCAGGAACTGTGGTCAAGTATTTTGTCAGAAGTGTTCCTCAAGAGTGTCCATAATTCCACAATATGGCATAGAAAGGGAAGTAAGGGTCTGTGATCCCTGCTTCTATAAACTCAATCCCTCGGCTAGCAAAAGTGAAGAAGGCTCAAAGAAGTCTGAAAGTGCATCATCTGACAAAGATTTGCCTCCAGAATACCTCAACAGTCCACTGAGTAGAGAATCTCAGACGCCTGCTAAGAAAACTGCAAAAGAAATTCAAGAAGAAGAGGAAGAGGAATTTCAATTGGCACTGGCGTTGTCACTGTCACAAGAAGAGGCTGCCAAAGATAGTCGACAACGTCCAAGTACCAAGTCAAATGAAGCCGCAGAACCATCATACAGCTCCTACAGGCAGACCAGCAATTTGTATTCGTCTCCTATGGATCCGTATGGAGGACAACTGGGAAATCAACAGCCACCACCACAAACCACACCACTGAATCAGTATCCTGTGGTAATGCCCTCCTCTCTCACAGGGCAACCAAAGCTGAATCAACTACCACCATCTCAAAACCCGCCGCAGTTTTCACGACAAACGCAGTTAACTAATACAGGGCCACATCTACCTGAGGCCACTCCTTCACAGTTAACCAACCCACCACAAGCTCAGTTTTTACCGGAAGGGGTTGCGTCACAGTATACCCATCCAGCATCACAGGTTACACAGCCCAAACCACAGACATTTCAGTCTCCCGAGATCAATGGTTTTCCTTCTGTAGATGCCTCTCAGATCCCACCACAAATGTTTTCATCTGGCTCGTTACAGCCACAACTAAACATGGGTCAGCCCTCATTTCAACAAGGACCCCTAATACAACAAGGACAACCAGGAGTTAATCCTCTCCAAGGGTCTTCAGCACAGCAAGGACAGCCAATACAGCAGGGACCTCCTATGCAACAGGTTTATGAACCGCAGCAACAACAGCCCCAACAATTTGCACCTCAACAAGGCTACCAACCTGGTCCAGGCCAAGGTCCGCCTGGCCAACATCAGCCACCACCACAGTACTATGGATCAGCACTACCCCCTCAGCAGTCAAACCAAGCTCCGCAGAGACAATTGTCTGACTTAGAACTGATTTCATTTGACTAACAGAACAGTCCAATGACTGTTTTCGTCTTAAATGTACTTTTAACTCTCATGTTAAGGTGAACTTAGATGAATTTTGTCGCAAAATAGTTGCATTTAAAATACAGATGTAAAAAAAAGGAAACGGGAGTATGATTGTACTTCAACTTGTAATTCTTCCAATAGTTAATAGATAGTAAATGAAATTGAATGGTGGACCGAAAATTGCAATACAGGAAAATTGCGGAAACTTCATTTAATGGTTACAGCGGTAACAAACCACTTTAATTGAAAACTGCTATGCAGTACTGTAAGCATTAATATGCATTTTTTTGGCATGGAACTCGATACGTTTTTGTTAGTTCATTCCGCTCGGGAGCATGCTCTGCTTGGAATATGATGAATCAGTGGAAGCTGGTTGTAGAAGGTTCCTCAGTGTTTGGCTTTGTAACCACTTAATCTTTGTTAGCATTAACTCTTCTTCAGCACTAAGCTTAAGCAAGCACGACGACGACGGCAACTGGAACCTCCATAAATTCCATATGTAAAACTGAAAAACAGTAGTTTTGCAGGTTTTGCACGTGAATTTTTCACTTTTCTACATTTGACAGCAGTTCTTTTCCTTTCGACGACGTAAAATTACCTCCTCTGCCGTTTTGTGGACGACGCGAGCACTTGTCGACAAGGTTTTGATTTTGTCCTCTTTTCTCTGAAGCACTGAGTTCAATTTAATTCCAGGATACGTTGAACAAATTTTGCAAGCATAATGCTTTGAAATATTTTAGAAATTATTGGAGAAGTGGGAAGTTCAGTTTTCAGATGACGTTCTTGCTGTCATCGGCGTCGTCTTTGCTTAAACTCTCCATCGGAAGTGCTTTGTACAATTTGGCTTAATTAAGAATGATAAAGTTT

Protein

Uniprot

Gene family

Uniprot term	Description
Q0V8S0	Hepatocyte growth factor-regulated tyrosine kinase substrate OS=Bos taurus OX=9913 GN=HGS PE=2 SV=1
Q99LI8	Hepatocyte growth factor-regulated tyrosine kinase substrate OS=Mus musculus OX=10090 GN=Hgs PE=1 SV=2
Q9JJ50	Hepatocyte growth factor-regulated tyrosine kinase substrate OS=Rattus norvegicus OX=10116 GN=Hgs PE=1 SV=1

Gene family	Subfamily
Ubiquitin Family	UBD\|Alpha-Helix\|VHS

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01363	FYVE	FYVE zinc finger	Domain	Interproscan
PF00790	VHS	VHS domain	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000306	Domain	FYVE zinc finger	Interproscan
IPR017073	Family	Hepatocyte growth factor-regulated tyrosine kinase substrate/VPS27	Interproscan
IPR002014	Domain	VHS domain	Interproscan
IPR008942	Homologous_superfamily	ENTH/VHS	Interproscan
IPR017455	Domain	Zinc finger, FYVE-related	Interproscan
IPR011011	Homologous_superfamily	Zinc finger, FYVE/PHD-type	Interproscan
IPR013083	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan
IPR003903	Conserved_site	Ubiquitin interacting motif	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46275	HEPATOCYTE GROWTH FACTOR-REGULATED TYROSINE KINASE SUBSTRATE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0046872	Molecular Function	metal ion binding	Interproscan
GO:0035091	Molecular Function	phosphatidylinositol binding	Interproscan
GO:0043130	Molecular Function	ubiquitin binding	Interproscan
GO:0005769	Cellular Component	early endosome	Interproscan
GO:0031623	Biological Process	receptor internalization	Interproscan
GO:0032456	Biological Process	endocytic recycling	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K12182	HGS, HRS, VPS27; hepatocyte growth factor-regulated tyrosine kinase substrate	-	Membrane trafficking	ko04131	deepkoala