Gene detail

Detailed information of ayon_s0004.g297.t1 in Acropora yongei

Genomic Location: sc0000004_pilon:4691944...4703483
NR annotation: XP_015776101.1, PREDICTED: TNF receptor-associated factor 6-like [Acropora digitifera]

Gene Structure

More details in Jbrowse

Sequence

CDS

ayon_s0004.g297.t1

ATGGCGATCAATATACTGgattatgacttacttttcataccagttcttcttccttgtcattgggcacttggggttgcaaatgtaaatcaaaagacaatatcattctgggatggaaaaaaaattacttctcctgccttcttcagaaacatcaggtgcttcctaaaggatcagattgccagaaagagaagacccctagacaaagtggattggatggatgaattcccgaagACGCAATCGGGAAACCCAGATAAGGCGGAGAACAGTAGCAGTGCGGATTTCTCCTCCCTTGACGAGGAAATCAACGTGAGGGAAGCAGACGAACGAGTTTGTCCACTAGACAGCATATCTATACCTCAAGAGGGAGGGTTTTTTCGTGATGTAGCCTGGGAGAGGGACATACTTTCACACCGTGTTAAATGCAAGAGAAACGAAAGAGGATGTGATTGGATGGGAGAATTACGTCAATATGAGGAGCATTTTAAGAATTCATGCCCTTATGAAGATGTCGTCTGTATCAGATGCAGCGACATTAAACAGCGCAAGTTCTTACCGGAACATGCAACATCGGAGTGTTCCAAACGGATTGTTCAGTGTAAATACTGTGTAAAGGAATTTGAATTCTGGCGCACTGAGATACACGAAGGCGAGGAATGCAATCTTTTTCCTCTTGATTGCCCTCAGCAATGCGGAATTTCAAAAATGGCGCGTGAGAAGTTGGGATTCCACATCAAAGATGACTGTTTCATGACATTGGTGACTTGTCCGTACAGTGATGCCGGATGCACCTTTCATGATAAACGGATCAATTTACAAGCCCACATAAAGGACTCCACTGAGGACCATTTGCACAAAGCATGGACACAGATCGCCGAGGTAAAAGAGGCAGTACTCAAAATAAATAAAAGCGAAGGTCACTTGAAAGACCGAAGTCGAGTAGAACAATTCCAACCAGAGAAAAAACGAATGGAAATTACTTTGCAAAGAACTATCGACGAGACTGACAAGCTTAAGTCTTTGACGACAAAGCTTGAAAAGGAAAACAGAAAAATAGAGCAAGACGTGAGTGGATTCACAAAACGGCTTTCAGATGTGGAAACTTACTCTCAAAGAAACAACGAGGAGATCAACAAGTTTAGCTCTTTGGCGACAAAGCTTGAAAAAGAAAACAGACGACTACAAGAAGATGTGAGTGGATTGGCAAAACAGCTCTCCGAGATGAAAACTTCATTGCAAATAATCAAGAGCGGGACCAAAGAGTTGATGCCTTCAACGACACAGCTTGAAGAGGAAAATAGAAATCTGAAGAAAGAAGTGAGTGAATTGGCAAAACAGCTTTCAGACACCAAAATATCCTCGCAAAGAAACAACGAGGAGATCAACAAGATAAGGCCTTTGATGACACAGCTTGAAGAGGAAAACAGAAATCTGAAGAAAGAGGTGAGCGGGATGGCAAAACAGCTTTCAGACACCAAAATGTCATCTCAAAGAAACAACGAGGAGATCAAGGAGTTAAGGCCTTTGACGACACAGCTGGAAGAGGAAAACAGAAATATGAAGAGAGAAGTAAGCGAATTGGCAAAACAGCTTTCAGACACCAAAATGTCCTCGCAAAGAAACAACGAGGAGATCAACAAGATAAGGCCTTTGACGACACAGCTTGAAGAGGAAAACAGAAATCTGAAGAAAGAGGTGAGCAGGATGGCAAAACAGCTTTCAGACACCAAAATGTCCCCACAAAGAAACAACGAGGAGAGCAAAGAGCTAAGACCTTTGACGACAAAGCTTGAAGAGGAAAACAGAAATCTTAAGAAAGAAGTGAGCGGATTGGCAAAACAGCTTTCAGACACCAAAATGTCATCTCAAAGAAACAACGAGGAGATCAAGGAGTTAAGGCCTTTGACGACACAGCTGgaagaggaaaacagaaatatgaagagagaagtgagCGGATTGGCAAAACAGCTTTCAGACACCAAAATGTCCTCACAAAGAAACAACGAGGAGATCAAGAAGCTAAGGCCTTTGACGACACAACTCGAAGGGGAAAACAGGAACCTGACGGATGAAGTGGCTAGATTGGCAAAACAGCTTTTAGAGACGGAAACTTCGTTGCAAGGAAACAACGAAGCGACCACTGAGTTGAAGCTTTTGGTGAGAAAGCTTGAGGCGGAAAACAGGCATCTGAAGGAAGTCACTGAAATGGCAAAACAGCTTCCCGAGATGAATAGGTCATTTACTGTGTCTGAAAGGAGACGTTACTTTGAAGGGAGAGCTGAGAGAGATGAAAACACCAGTTAG

Transcript

ayon_s0004.g297.t1

TTTCCCATAAAAATATCCGTAAAGCTAATCAGAATGGCGATCAATATACTGgattatgacttacttttcataccagttcttcttccttgtcattgggcacttggggttgcaaatgtaaatcaaaagacaatatcattctgggatggaaaaaaaattacttctcctgccttcttcagaaacatcaggtgcttcctaaaggatcagattgccagaaagagaagacccctagacaaagtggattggatggatgaattcccgaagACGCAATCGGGAAACCCAGATAAGGCGGAGAACAGTAGCAGTGCGGATTTCTCCTCCCTTGACGAGGAAATCAACGTGAGGGAAGCAGACGAACGAGTTTGTCCACTAGACAGCATATCTATACCTCAAGAGGGAGGGTTTTTTCGTGATGTAGCCTGGGAGAGGGACATACTTTCACACCGTGTTAAATGCAAGAGAAACGAAAGAGGATGTGATTGGATGGGAGAATTACGTCAATATGAGGAGCATTTTAAGAATTCATGCCCTTATGAAGATGTCGTCTGTATCAGATGCAGCGACATTAAACAGCGCAAGTTCTTACCGGAACATGCAACATCGGAGTGTTCCAAACGGATTGTTCAGTGTAAATACTGTGTAAAGGAATTTGAATTCTGGCGCACTGAGATACACGAAGGCGAGGAATGCAATCTTTTTCCTCTTGATTGCCCTCAGCAATGCGGAATTTCAAAAATGGCGCGTGAGAAGTTGGGATTCCACATCAAAGATGACTGTTTCATGACATTGGTGACTTGTCCGTACAGTGATGCCGGATGCACCTTTCATGATAAACGGATCAATTTACAAGCCCACATAAAGGACTCCACTGAGGACCATTTGCACAAAGCATGGACACAGATCGCCGAGGTAAAAGAGGCAGTACTCAAAATAAATAAAAGCGAAGGTCACTTGAAAGACCGAAGTCGAGTAGAACAATTCCAACCAGAGAAAAAACGAATGGAAATTACTTTGCAAAGAACTATCGACGAGACTGACAAGCTTAAGTCTTTGACGACAAAGCTTGAAAAGGAAAACAGAAAAATAGAGCAAGACGTGAGTGGATTCACAAAACGGCTTTCAGATGTGGAAACTTACTCTCAAAGAAACAACGAGGAGATCAACAAGTTTAGCTCTTTGGCGACAAAGCTTGAAAAAGAAAACAGACGACTACAAGAAGATGTGAGTGGATTGGCAAAACAGCTCTCCGAGATGAAAACTTCATTGCAAATAATCAAGAGCGGGACCAAAGAGTTGATGCCTTCAACGACACAGCTTGAAGAGGAAAATAGAAATCTGAAGAAAGAAGTGAGTGAATTGGCAAAACAGCTTTCAGACACCAAAATATCCTCGCAAAGAAACAACGAGGAGATCAACAAGATAAGGCCTTTGATGACACAGCTTGAAGAGGAAAACAGAAATCTGAAGAAAGAGGTGAGCGGGATGGCAAAACAGCTTTCAGACACCAAAATGTCATCTCAAAGAAACAACGAGGAGATCAAGGAGTTAAGGCCTTTGACGACACAGCTGGAAGAGGAAAACAGAAATATGAAGAGAGAAGTAAGCGAATTGGCAAAACAGCTTTCAGACACCAAAATGTCCTCGCAAAGAAACAACGAGGAGATCAACAAGATAAGGCCTTTGACGACACAGCTTGAAGAGGAAAACAGAAATCTGAAGAAAGAGGTGAGCAGGATGGCAAAACAGCTTTCAGACACCAAAATGTCCCCACAAAGAAACAACGAGGAGAGCAAAGAGCTAAGACCTTTGACGACAAAGCTTGAAGAGGAAAACAGAAATCTTAAGAAAGAAGTGAGCGGATTGGCAAAACAGCTTTCAGACACCAAAATGTCATCTCAAAGAAACAACGAGGAGATCAAGGAGTTAAGGCCTTTGACGACACAGCTGgaagaggaaaacagaaatatgaagagagaagtgagCGGATTGGCAAAACAGCTTTCAGACACCAAAATGTCCTCACAAAGAAACAACGAGGAGATCAAGAAGCTAAGGCCTTTGACGACACAACTCGAAGGGGAAAACAGGAACCTGACGGATGAAGTGGCTAGATTGGCAAAACAGCTTTTAGAGACGGAAACTTCGTTGCAAGGAAACAACGAAGCGACCACTGAGTTGAAGCTTTTGGTGAGAAAGCTTGAGGCGGAAAACAGGCATCTGAAGGAAGTCACTGAAATGGCAAAACAGCTTCCCGAGATGAATAGGTCATTTACTGTGTCTGAAAGGAGACGTTACTTTGAAGGGAGAGCTGAGAGAGATGAAAACACCAGTTAGATTAGAACTTAAGAGAtctgtaagatcctcatatccagttttgcccacaaaatatatttataacataaattcaatagctcgagcgtgcttcatattcttattgagcacgctaatgacgtcattaaactaacagctcgttg

Protein

Gene family

Gene family	Subfamily
Ubiquitin Family	DUB\|ULP\|ULP

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02176	zf-TRAF	TRAF-type zinc finger	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001293	Domain	Zinc finger, TRAF-type	Interproscan
IPR013083	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan
IPR038765	Homologous_superfamily	Papain-like cysteine peptidase superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10131	TNF RECEPTOR ASSOCIATED FACTOR	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0008270	Molecular Function	zinc ion binding	Interproscan
GO:0033209	Biological Process	tumor necrosis factor-mediated signaling pathway	Interproscan
GO:0070534	Biological Process	protein K63-linked ubiquitination	Interproscan