Gene detail

Detailed information of ayon_s0005.g304.t1 in Acropora yongei

Genomic Location: sc0000005_pilon:5685052...5692496
NR annotation: XP_044167463.1, nucleotide-binding oligomerization domain-containing protein 2-like isoform X2 [Acropora millepora]

Gene Structure

More details in Jbrowse

Sequence

CDS

ayon_s0005.g304.t1

atgggaaaaaccacgtattgtcacaagattgcatacgactgggctaagaagcgaaaaggtggcgagtcatttcctgatgttatgcttgtgctgctattaaaatgtagagacattaaatgtggcttatgggaggctattgatgatcagcttttaccgagagaagtgaacgaaggagaaaaagagagatttttcgtgttcgttcgagagcaccagtcaaaggtcttactaatgcttgacggattagatgagttacccagcagccaattgtcgatttatatagacatcattcaaggaagagttcttccagagtcttacatagtggttacagcacgacacgaagttggaatgagagtacgatgttactgtcacaccctgttagaggtagaagggtttaccaagacggatgctaaagagttcgttcagagatatttcagagaagaagaggatttggcagaaaagctcttagacaagctagactctgacataaccctacaagaccttacagcaaaccctttttacaccgctcttttatgcctcctctgcgaagactaccaaggaaaattacctgaaagtagaactctgctttaccttgaaatagttgagtgcgtcttgaggaggtacaggctaaagatgaaattaccagaaacaagacaagatctttcagcattataccaagttgaactgaagcaacttggtcgtattgccatggagggtttgtgcaaccatagcatgtattttgaccagagcgcatttcagggtttctcaagcgatttaaaatctggcctcggatttttgtcagtggaggctggacgaagcaaactaaaaccaggccgaagctatggcttcctgcggaagagctttcaagaatttttcgcagcactttatctctgtggtcagcttctcgatggacaaatctctgttgacagcttaatttctgagggcagatattttgatgagttacagcaggtcctgatgtttacgactggtattttggctcaaaagtacgaagtagcagtcaaggaactgatcgttggtttagctactcaagtcaacctagagggtagtcgtctagacgttgcattggcttgtatcaatgaatgcaaaagagaggggaatacttttcacaaagaaatggcccagctttttggctcgcgtcttcaacttgagaaggctgaatactctggCTTAAACAAGGAATTTACTGCTGTGGCTATTGAAATCATGGAGACGAATTCAACGTTTACAAATCTTTACTTCTTTGAGTGTCACATTGATGACGCAAATGCAGACGCGCTGGCTAAAGGACTGAAAGAAAATTCAATTCTGACATCGCTGGACTTGACGAAAAATGAAATTGACAATGTCGGTGTTGGCGCCCTGGCTAAAGTACTGAAAGAAAATTCAACGCTGACATGGCTGAACTTGTCTCATAATAAAATTGGCGAAGTCGGTGCTGATGCACTGGCTAAAGGACTGAAAGAAAATTCAACGCTGATATGGCTGGACTTGTCTTTGAATGAGATGGACGACGACACTGTTGGTGCACTGGCTAAAGTACTGAAAGAAAATTCAACGCTGACATGGCTGAACTTGTCTCATAATAAAATTGGCGAAGTCGGTGCTGATGCACTGGCTAAAGTACTGAAAGAAAATTCAACGCTGACATGGCTGAACTTGTCTCATAATAAAATTGGCGAAGTCGGTGCTGATGCACTGGTTAAAGGACTGAAAGAAAATTCAACGCTGACAAAGCTGACCTTGTCTTTTAATGACATGGGCGACGACGGTGTTGGTGCACTGGCTGAGGGACTGAAAGAAAATTCAACGCTGACATGGCTGAACTTGTCTCATAATAAAATTGGCGAAGTCGGTGCTGATGCACTGGCTAAAGTACTGAAAGAAAATTCAACGCTGACATGGCTGAACTTGTCTCATAATAAAATTGGCGAAGTCGGTGCTGATGCACTGGCTAATGGACTGAAAGAAAATTCAACGCTGACAGAGTTAGACTTGCGTAATAATGCAATTGGCGATGTCGGTGCCGATGCACTGGCTAAAGGACTAAAAGAAAATTCAACGCTGAGATGGCTGAAGTTGCTTAACAATGCAATTGGCGATGTCGTTGGCGATGTCGGTGCCGATGCACTGGCTAAAGGACTGAAAGAAAATTCAACGTTGACAAATCTTGACTTATTTAATAACGCAATTGGCGATGTCGGTGCTGGTGCACTAGCTGAAGTCAACGCTGACGTGGTTGAACTTGTTTCGTAA

Transcript

ayon_s0005.g304.t1

actcaaatttgtcaggagaagaaaagcacgaggaagaaaaactgatgacagtgttgacgtgtttcaaatatttcaaccgcataaagaaggttcacagccgagaagggtcttgattgaagggcagccaggcatgggaaaaaccacgtattgtcacaagattgcatacgactgggctaagaagcgaaaaggtggcgagtcatttcctgatgttatgcttgtgctgctattaaaatgtagagacattaaatgtggcttatgggaggctattgatgatcagcttttaccgagagaagtgaacgaaggagaaaaagagagatttttcgtgttcgttcgagagcaccagtcaaaggtcttactaatgcttgacggattagatgagttacccagcagccaattgtcgatttatatagacatcattcaaggaagagttcttccagagtcttacatagtggttacagcacgacacgaagttggaatgagagtacgatgttactgtcacaccctgttagaggtagaagggtttaccaagacggatgctaaagagttcgttcagagatatttcagagaagaagaggatttggcagaaaagctcttagacaagctagactctgacataaccctacaagaccttacagcaaaccctttttacaccgctcttttatgcctcctctgcgaagactaccaaggaaaattacctgaaagtagaactctgctttaccttgaaatagttgagtgcgtcttgaggaggtacaggctaaagatgaaattaccagaaacaagacaagatctttcagcattataccaagttgaactgaagcaacttggtcgtattgccatggagggtttgtgcaaccatagcatgtattttgaccagagcgcatttcagggtttctcaagcgatttaaaatctggcctcggatttttgtcagtggaggctggacgaagcaaactaaaaccaggccgaagctatggcttcctgcggaagagctttcaagaatttttcgcagcactttatctctgtggtcagcttctcgatggacaaatctctgttgacagcttaatttctgagggcagatattttgatgagttacagcaggtcctgatgtttacgactggtattttggctcaaaagtacgaagtagcagtcaaggaactgatcgttggtttagctactcaagtcaacctagagggtagtcgtctagacgttgcattggcttgtatcaatgaatgcaaaagagaggggaatacttttcacaaagaaatggcccagctttttggctcgcgtcttcaacttgagaaggctgaatactctggCTTAAACAAGGAATTTACTGCTGTGGCTATTGAAATCATGGAGACGAATTCAACGTTTACAAATCTTTACTTCTTTGAGTGTCACATTGATGACGCAAATGCAGACGCGCTGGCTAAAGGACTGAAAGAAAATTCAATTCTGACATCGCTGGACTTGACGAAAAATGAAATTGACAATGTCGGTGTTGGCGCCCTGGCTAAAGTACTGAAAGAAAATTCAACGCTGACATGGCTGAACTTGTCTCATAATAAAATTGGCGAAGTCGGTGCTGATGCACTGGCTAAAGGACTGAAAGAAAATTCAACGCTGATATGGCTGGACTTGTCTTTGAATGAGATGGACGACGACACTGTTGGTGCACTGGCTAAAGTACTGAAAGAAAATTCAACGCTGACATGGCTGAACTTGTCTCATAATAAAATTGGCGAAGTCGGTGCTGATGCACTGGCTAAAGTACTGAAAGAAAATTCAACGCTGACATGGCTGAACTTGTCTCATAATAAAATTGGCGAAGTCGGTGCTGATGCACTGGTTAAAGGACTGAAAGAAAATTCAACGCTGACAAAGCTGACCTTGTCTTTTAATGACATGGGCGACGACGGTGTTGGTGCACTGGCTGAGGGACTGAAAGAAAATTCAACGCTGACATGGCTGAACTTGTCTCATAATAAAATTGGCGAAGTCGGTGCTGATGCACTGGCTAAAGTACTGAAAGAAAATTCAACGCTGACATGGCTGAACTTGTCTCATAATAAAATTGGCGAAGTCGGTGCTGATGCACTGGCTAATGGACTGAAAGAAAATTCAACGCTGACAGAGTTAGACTTGCGTAATAATGCAATTGGCGATGTCGGTGCCGATGCACTGGCTAAAGGACTAAAAGAAAATTCAACGCTGAGATGGCTGAAGTTGCTTAACAATGCAATTGGCGATGTCGTTGGCGATGTCGGTGCCGATGCACTGGCTAAAGGACTGAAAGAAAATTCAACGTTGACAAATCTTGACTTATTTAATAACGCAATTGGCGATGTCGGTGCTGGTGCACTAGCTGAAGTCAACGCTGACGTGGTTGAACTTGTTTCGTAATAAAATTGGATTTTTTATTGCTGATGCACTAGCTAAAGGAGGGAAAGAAAATTCAACGCTGACGGGGCTGAACTTGTCTATAAATGGAATTGGCGATG

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13516	LRR_6	Leucine Rich repeat	Repeat	Interproscan
PF05729	NACHT	NACHT domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001611	Repeat	Leucine-rich repeat	Interproscan
IPR032675	Homologous_superfamily	Leucine-rich repeat domain superfamily	Interproscan
IPR052410	Family	Dynein regulatory complex subunit 5	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR007111	Domain	NACHT nucleoside triphosphatase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24107	YNEIN REGULATORY COMPLEX SUBUNIT 5	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan