Gene detail

Detailed information of ayon_s0007.g253.t1 in Acropora yongei

Genomic Location: sc0000007_pilon:3686705...3724766
NR annotation: XP_044174931.1, X-ray repair cross-complementing protein 6-like [Acropora millepora]
Species abbreviation AYONG · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

ayon_s0007.g253.t1

CATTCAAAAGATATTACTCCTTAAAGCGTCAGAAAAATGCCATAATCTGTTGGTTATGGAAAAAATTGACTTCAAGAAGTTGTGAATCCAGTTGACAAAATCAGCTGATGATTCGAAAAAAGAAAAAAAAACACACACACTCTTGTCAACACTAATTTATTAATTTGTGGCAAGAAAACACGGTCTGAAGCTTACGACGTTAAGAAGTGAAATTATCCAATCTGCCTTCGTTAATAGCAAAAAGTGAAGGGAATTAGACTTATACTGCAATTGCATCCACTCGATTAAATACAGAAAAGTATCTGTATTTTTTTTTTCTGTTTTCAGAGAAAGCTTCCGGTTGTGGGAACAATTCGGGAAAATGTTCACATGACCCTGTTTTCCATGTCTTCATAGTTAAAATAATAATAATGATACCAGTAAAATAACACAAAGGTAGTTGGAACTAGATTAAAGCAAAGGGGAAAAAAGTCTCTAAGAAAGTTCCTTCTAAAATGAAACATCTCTTAGGCAAAACGTTTCGTAACGATTTTACCCTCAGAGAATCATCTAATCAAAACTAGTAGTGATACGGGTGACACATTCTTAAACATGCGCTCTTGCTTGCATGTTAACGGGAGAGAATCTTCATTTTCTTGCTTGCATGTTAACGGGAGAGAATCTTCATTCTAAACCGGTTTGTGTCATGATTCTCTAACAGGATACTTCGCCCGTATTCAGTGTGCAACCGTGACGTGATGGAATAATCGCCAATTGATAAAAACAGCGCATAGTTACATTTCAAAGTTGCGTTTTCGTATGGCAGCCAAGGAACGTTCACATTGACGGTTGAAAAAGGAGTTAACGAAGAAATAGagacgatgtcagtaacgaatgtcatcaaacgtaactttgcacttctgcaatcatttctcgatcattccagACGCGATGGGACAATAAGGACAGCCTCATCATGGTTATTGACTGCTCAAGAGAAATGTTTGAGAAGACTAGAGGAGAAATTCCATTTCAACTTTGCATCAAATGTACTGTTAGTGTGTTAAAGAATAAAATTATCAGCAGTGATAAAGACTTGATTGGTTTGGTTTTCTTTGGAACCGATAAAAGCAAAAACCCAAGTGATTTCAAGCAGGTTTATGTCTACCAGGAGTTAGATTTCCCGGATGCCAATCGTATACTTGATCTGGAAAAATTTCTTGAAGATGATAGTTGTGACAATTTTGCAACCAGATTTGGACACAACACTGGATATTCCTTGAACGATGTTCTTTGGACATGTTCTAATATGTTCTCGAAGAGCTCTCAAAAGATTGGACATAAACGAATTATGCTGTTTACAAACAATGACAATCCACATGCAGACAACACTTCCCTGCAAAGACAAGCTAAGACAAAATCCAGAGATCTCAGTGAGATTGGCATTGAAATAGACTTGATGCATATGCAACCTCCCAATCATGCTTTTGATGCTAGTCTTTTTTATCAGGATGTCATTCAACTGGATGAAGATGAATGTGGGGTTTTGCCTGATCCTGCAGAAAAGTTTGAAGAACTACTTTGCAGGGTTCAAAGAAAGGAGTACAAGAAGAGGCCCTTGGCAACTATCCCTCTGACCTTAGCTGATGGAATTGAGTTGGGAGTATCTGTATATACTCTCTGCAGACCTGCAACCAAATCCAGTTATCTTAACTTAGATAGCCACACAAATGAAGAAGTTAAGATACACACCAAATACATTTGCAAGGACACTGGCAGAGAACTAATGCCAACAGACATCAAACTTTATCAAATGTTTGGAGGTGAAAAAGTTATTTTTGAAAAGGAAGAAGTTGCTTCCATGAAAACATTTGGTGACCCAGGACTCCTTCTGATGGGATTTAAACCGAGATCTTCAGTTAAGACTCATCATCACATCAGACCAGCACAGTTCCTTTATCCAAGTGAAAAGAGTGTATCAGGAAGTACTACATTATTTTCTGCGCTACTTGATAGATGTATTGCCAGGGATGTTGTACCCATATGCCGATTTATTCCACGCAGGAGTTCTCCACCAAGATTTGTGGCTTTGCTCCCTCAGGAAGAAGAGCTAGATGAACACAACAACCAAGTCAGACCTCCAGGATTCCACGTGATATTTCTTCCTTTTACTGATGATCTCAGAAGACTCAAATATGAACAGACACCAAAAGCAACAACTGAACAGATCAACAAAGCGAAACAAGTTATCAAGAATTTAACATCTGGATTTGACAGCTTAAACTTTGAAAATCCCTCCTTACAAAAGCATTTCAAGAACCTTGAAGCTCTGGCCTTAGACAGAGATGAGCCTGAAAAATTGATTGATCACACAGAGCCAAAAACAGAAGCAATCGATCGCAAAGCTGGTGAAGCAATAAGGCAGTTTAAGGATTTAGTTTTTCCTGATGATTATGATCCATCAGGAAAACCTGCAGCCACTAAGAGAAAGGCAGGGACAGCAGATGGAAGTGCAGCCAAGAAGGGCAAAGCAGGCAGTGATGTTGAAATTGACTTGAGGGAAGAAGCACAGAAAGGAAGGCTTTCCAAGCTGACTGTTCCAGTGTTGAAAGACTTTGTTAAGCAAGCAGGAATCAAGTGTGGGACCAAAAAGGCCGATTTAGTTGAGGCTATAAAAAATCATTTTGGGGTTTCATGAGAAAAAGCAAAGATCAAAATGGTAGTAAGAAAGTCACACCAACAAT

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
O93257	X-ray repair cross-complementing protein 5 OS=Gallus gallus OX=9031 GN=XRCC6 PE=2 SV=1
P12956	X-ray repair cross-complementing protein 6 OS=Homo sapiens OX=9606 GN=XRCC6 PE=1 SV=2
P23475	X-ray repair cross-complementing protein 6 OS=Mus musculus OX=10090 GN=Xrcc6 PE=1 SV=5

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005455 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03731 all species →	Ku_N	Ku70/Ku80 N-terminal alpha/beta domain	Domain	Interproscan
PF03730 all species →	Ku_C	Ku70/Ku80 C-terminal arm	Family	Interproscan
PF02735 all species →	Ku	Ku70/Ku80 beta-barrel domain	Domain	Interproscan
PF02037 all species →	SAP	SAP domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036361 all species →	Homologous_superfamily	SAP domain superfamily	Interproscan
IPR006165 all species →	Family	Ku70	Interproscan
IPR036465 all species →	Homologous_superfamily	von Willebrand factor A-like domain superfamily	Interproscan
IPR005161 all species →	Domain	Ku70/Ku80, N-terminal alpha/beta	Interproscan
IPR005160 all species →	Domain	Ku70/Ku80 C-terminal arm	Interproscan
IPR047087 all species →	Domain	Ku70, core domain	Interproscan
IPR006164 all species →	Domain	Ku70/Ku80 beta-barrel domain	Interproscan
IPR016194 all species →	Homologous_superfamily	SPOC-like, C-terminal domain superfamily	Interproscan
IPR003034 all species →	Domain	SAP domain	Interproscan
IPR027388 all species →	Homologous_superfamily	Ku70, bridge and pillars domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12604 all species →	KU AUTOANTIGEN DNA HELICASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000723 all species →	Biological Process	telomere maintenance	Interproscan
GO:0003690 all species →	Molecular Function	double-stranded DNA binding	Interproscan
GO:0006303 all species →	Biological Process	double-strand break repair via nonhomologous end joining	Interproscan
GO:0042162 all species →	Molecular Function	telomeric DNA binding	Interproscan
GO:0043564 all species →	Cellular Component	Ku70:Ku80 complex	Interproscan
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan
GO:0003684 all species →	Molecular Function	damaged DNA binding	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0003678 all species →	Molecular Function	DNA helicase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K10884	XRCC6, KU70, G22P1; ATP-dependent DNA helicase 2 subunit 1	-	DNA repair and recombination proteins	ko03400	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.